BAC Information

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BAC

Clone NameB6Ng01-130K21
Chromosome13 (Build37)
Map Location 40,513,467 - 40,661,770
singlet/doubletdoublet
Overlap geneLOC666894
Upstream geneLOC100041779, LOC382747, A230103O09Rik, Ofcc1
Downstream geneLOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130K21.bB6Ng01-130K21.g
ACCDH931934DH931935
length1,213777
definitionDH931934|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K21, 5' end.DH931935|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,660,538 - 40,661,770)(40,513,467 - 40,514,242)
sequence
gaattctggaagaccccagagaatgtgtaaatgcagtcatttgggcgctt
gtgtgcctggcatcataagtagtctaacaaagacacctgaagggattgca
agcgccaagcacagcaatgtgtttatccctcgcccggagatgcttcagcc
ttcatctggatgtctgtttttaatagtttccaggtctgtcagtgggaaca
ttgcaaacgggccgaatgtgatcagcacacggggtgagagggaaacagac
agctaagaggcgttcaatagagtctgagctggtctttgcttgcctgaacg
actccaaggttgtgaacctgagcttgatcgaattcaagcctggtagtgct
tggtggaaaacagggtagtttcctataaaaagcttctcttctgagaccag
tgtacacaaaggacacacatttgagactacatttgtttcttctcaaagaa
tcatcactagccccctctgtcagaatacatgtacctgtttgtagttctag
acactgggtagcccaaaggcatgggtatcatgttgatggtgactatcttt
tactgcctcaattcactgcagaaagagccaggacacaaaaacagtcttct
ttataacaaccagctcttgtgataactgacccagtccgatgagagcaaga
tttcattccagaagtcttaacccctgattactacctctttaatgggtgat
ctcccagtacagctacagggtcaatcacatgtcaacacgcatttggaaag
aacagactgtattcaaaccatcacaggtgtgctagtggaaaagttgctac
ctcatttccccagggtcactggaccctgaaccacagcatcagtgtttagg
agcagcccgttcttcatggggtgccagggtgcaagtgggatgcagagaaa
tagtaaagagtaaggctcagtctatggttcagcttcttgtgcagagcttt
gctacagagacagcggaacaaatgggctgagccgaggtcaggaaccttca
ggatcttccctcagcctgctattacccacttccttctttgccaggaagta
actggtctgaacagagacagcaaatcaatccgagtcctcttcgttcgctt
tcattccatggcctagcttgttccaagtagggaagagtgaaacaaaccaa
tcatctgaccaagaaatgccaaaaagtatgtgtgctatgccatgaattgt
gtgggtgtggtgt
gaattccagcctcctccttggccatgaccaggtgcaaacaagcggagtta
aaagaggccgacagggcaagaaaagaagagggggtgcagacaggggatat
gggtcagtttgttatgtgcttgcaccctaagcatgaggagctgatgccca
gtacagtccccgtgtaaaaaaagctgtgcatggtggcttgcacctgtcac
ctcaatgctagagaggcagacacagatcccggggagtccttgggcagcca
gcataacctaatttgccaccccaggtttgagtaaaagaccctctctcaaa
atcaaaaaggataaacctaggggacattagaagctgacttctgacttctc
tacactcgtgtgcacctacgcgtatacatgcatgcagaagaaggaatagg
aaaagaaagagaggagcgggggtggaggaggaagagttgccattaggaac
cttgggactccatccaaagtctacggcaagaactagaaaggaagagtatt
atacagcacccacgaaagtgagcatgcttaaaagaatcttaggactgcaa
gtgaccccagagatgctcttggcttgactgcacaattcaaatctccctgg
ccatgagtagtgaaaattgaagctcgtaaacaagaaaaggttcgctccac
acaaagaggaccacagacagccacggtcttctcttccagctgcgtaacat
gttacaggaggcaactgggtgagcagccaatcagagtggtccttctttca
gacacagttctgcgggggggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40660538_40661770
seq2: B6Ng01-130K21.b_47_1259 (reverse)

seq1  ACACACACACCCACACAAACTCAT-GCAT-GCACACATACATTCTTGGCT  48
      |||| ||||||||||| || |||| |||| |||||||||| || ||||| 
seq2  ACAC-CACACCCACAC-AATTCATGGCATAGCACACATAC-TTTTTGGC-  46

seq1  ATCTCTTGTGTCTGATGGATTTGTTTTGTGTCTCAATCTTCCTACACTGA  98
      || ||||| ||| ||| |||| |||   ||| ||| ||||||   |||  
seq2  ATTTCTTG-GTCAGAT-GATTGGTT---TGTTTCACTCTTCC-CTACTTG  90

seq1  GACCAGGCTAGGGCACTGGGAATGAAAGACGACGAGAAGTGACTCGGGAT  148
      || || |||||| ||   ||||||||||   ||||  || ||||| ||||
seq2  GAACAAGCTAGGCCA--TGGAATGAAAGCGAACGAAGAG-GACTC-GGAT  136

seq1  TGACTTTGGCTGTCTCTGGTTCAGACCCAGGTACTTTCCTGGCAGAGAAG  198
      |||  || ||||||||| ||||||| |||| ||| ||||||||| |||||
seq2  TGA--TTTGCTGTCTCT-GTTCAGA-CCAGTTAC-TTCCTGGCAAAGAAG  181

seq1  GAAGTGGGTAATAGCAGGCTGCGGGAAGATCCTGAAGGTTCCCTGACCTC  248
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  GAAGTGGGTAATAGCAGGCTGAGGGAAGATCCTGAAGGTT-CCTGACCTC  230

seq1  GGCTCAGCCCATTTGTTCCGCTGTCTCTGTAGCAGAGCTCTGCACAGGAA  298
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  GGCTCAGCCCATTTGTTCCGCTGTCTCTGTAGCAAAGCTCTGCACAAGAA  280

seq1  GCCTGAACCATAGACTGAGCCCTACTCTTTACTATTTCTCTGCATCCCAC  348
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  G-CTGAACCATAGACTGAGCCTTACTCTTTACTATTTCTCTGCATCCCAC  329

seq1  TTGCACCCTGGCACCCCATGAAGAACGGGCTGCTCCTAAACACTGATGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCTGGCACCCCATGAAGAACGGGCTGCTCCTAAACACTGATGCT  379

seq1  GTGGTTCAGGGTCCAGTGACCCTGGGGAAATGAGGTAGCAACCTTTTCCA  448
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGGTTCAGGGTCCAGTGACCCTGGGGAAATGAGGTAGCAA-CTTTTCCA  428

seq1  CTAGCACACCTGTGATGGTTTGAATACAGTCTGTTCTTTCCAAATGCGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACACCTGTGATGGTTTGAATACAGTCTGTTCTTTCCAAATGCGTG  478

seq1  TTGACATGTGATTGACCCTGTAGCTGTACTGGGAGATCACCCATTAAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGTGATTGACCCTGTAGCTGTACTGGGAGATCACCCATTAAAGA  528

seq1  GGTAGTAATCAGGGGTTAAGACTTCTGGAATGAAATCTTGCTCTCATCGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAATCAGGGGTTAAGACTTCTGGAATGAAATCTTGCTCTCATCGG  578

seq1  ACTGGGTCAGTTATCACAAGAGCTGGTTGTTATAAAGAAGACTGTTTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCAGTTATCACAAGAGCTGGTTGTTATAAAGAAGACTGTTTTTG  628

seq1  TGTCCTGGCTCTTTCTGCAGTGAATTGAGGCAGTAAAAGATAGTCACCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCTCTTTCTGCAGTGAATTGAGGCAGTAAAAGATAGTCACCAT  678

seq1  CAACATGATACCCATGCCTTTGGGCTACCCAGTGTCTAGAACTACAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGATACCCATGCCTTTGGGCTACCCAGTGTCTAGAACTACAAACA  728

seq1  GGTACATGTATTCTGACAGAGGGGGCTAGTGATGATTCTTTGAGAAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATGTATTCTGACAGAGGGGGCTAGTGATGATTCTTTGAGAAGAAA  778

seq1  CAAATGTAGTCTCAAATGTGTGTCCTTTGTGTACACTGGTCTCAGAAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGTCTCAAATGTGTGTCCTTTGTGTACACTGGTCTCAGAAGAG  828

seq1  AAGCTTTTTATAGGAAACTACCCTGTTTTCCACCAAGCACTACCAGGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTATAGGAAACTACCCTGTTTTCCACCAAGCACTACCAGGCTT  878

seq1  GAATTCGATCAAGCTCAGGTTCACAACCTTGGAGTCGTTCAGGCAAGCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGATCAAGCTCAGGTTCACAACCTTGGAGTCGTTCAGGCAAGCAA  928

seq1  AGACCAGCTCAGACTCTATTGAACGCCTCTTAGCTGTCTGTTTCCCTCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTCAGACTCTATTGAACGCCTCTTAGCTGTCTGTTTCCCTCTC  978

seq1  ACCCCGTGTGCTGATCACATTCGGCCCGTTTGCAATGTTCCCACTGACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTGTGCTGATCACATTCGGCCCGTTTGCAATGTTCCCACTGACAG  1028

seq1  ACCTGGAAACTATTAAAAACAGACATCCAGATGAAGGCTGAAGCATCTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAAACTATTAAAAACAGACATCCAGATGAAGGCTGAAGCATCTCC  1078

seq1  GGGCGAGGGATAAACACATTGCTGTGCTTGGCGCTTGCAATCCCTTCAGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGGGATAAACACATTGCTGTGCTTGGCGCTTGCAATCCCTTCAGG  1128

seq1  TGTCTTTGTTAGACTACTTATGATGCCAGGCACACAAGCGCCCAAATGAC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTTAGACTACTTATGATGCCAGGCACACAAGCGCCCAAATGAC  1178

seq1  TGCATTTACACATTCTCTGGGGTCTTCCAGAATTC  1233
      |||||||||||||||||||||||||||||||||||
seq2  TGCATTTACACATTCTCTGGGGTCTTCCAGAATTC  1213

seq1: chr13_40513467_40514242
seq2: B6Ng01-130K21.g_68_844

seq1  GAATTCCAGCCTCCTCCTTGGCCATGACCAGGTGCAAACAAGCGGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTCCTCCTTGGCCATGACCAGGTGCAAACAAGCGGAGTTA  50

seq1  AAAGAGGCCGACAGGGCAAGAAAAGAAGAGGGGGTGCAGACAGGGGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCGACAGGGCAAGAAAAGAAGAGGGGGTGCAGACAGGGGATAT  100

seq1  GGGTCAGTTTGTTATGTGCTTGCACCCTAAGCATGAGGAGCTGATGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTTTGTTATGTGCTTGCACCCTAAGCATGAGGAGCTGATGCCCA  150

seq1  GTACAGTCCCCGTGTAAAAAAAGCTGTGCATGGTGGCTTGCACCTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCCCCGTGTAAAAAAAGCTGTGCATGGTGGCTTGCACCTGTCAC  200

seq1  CTCAATGCTAGAGAGGCAGACACAGATCCCGGGGAGTCCTTGGGCAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCTAGAGAGGCAGACACAGATCCCGGGGAGTCCTTGGGCAGCCA  250

seq1  GCATAACCTAATTTGCCACCCCAGGTTTGAGTAAAAGACCCTCTCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACCTAATTTGCCACCCCAGGTTTGAGTAAAAGACCCTCTCTCAAA  300

seq1  ATCAAAAAGGATAAACCTAGGGGACATTAGAAGCTGACTTCTGACTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGGATAAACCTAGGGGACATTAGAAGCTGACTTCTGACTTCTC  350

seq1  TACACTCGTGTGCACCTACGCGTATACATGCATGCAGAAGAAGGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCGTGTGCACCTACGCGTATACATGCATGCAGAAGAAGGAATAGG  400

seq1  AAAAGAAAGAGAGGAGCGGGGGTGGAGGAGGAAGAGTTGCCATTAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAGAGGAGCGGGGGTGGAGGAGGAAGAGTTGCCATTAGGAAC  450

seq1  CTTGGGACTCCATCCAAAGTCTACGGCAAGAACTAGAAAGGAAGAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACTCCATCCAAAGTCTACGGCAAGAACTAGAAAGGAAGAGTATT  500

seq1  ATACAGCACCCACGAAAGTGAGCATGCTTAAAAGAATCTTAGGACTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCACCCACGAAAGTGAGCATGCTTAAAAGAATCTTAGGACTGCAA  550

seq1  GTGACCCCAGAGATGCTCTTGGCTTGACTGCACAATTCAAATCTCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCAGAGATGCTCTTGGCTTGACTGCACAATTCAAATCTCCCTGG  600

seq1  CCATGAGTAGTGAAAATTGAAGCTCGTAAACAAGAAAAGGTTCGCTCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGTAGTGAAAATTGAAGCTCGTAAACAAGAAAAGGTTCGCTCCAC  650

seq1  ACAAAGAGGACCACAGACAGCCACGGTCTTCTCTTCCAGCTGCGTAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGGACCACAGACAGCCACGGTCTTCTCTTCCAGCTGCGTAACAT  700

seq1  GTTACAGGAGGCAACTGGGTGAGCAGCCAATCAGAGTGGTCCTTC-TTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTACAGGAGGCAACTGGGTGAGCAGCCAATCAGAGTGGTCCTTCTTTCA  750

seq1  GACACAGTTCTGCGGGGGGGTGGGGGG  776
      |||||||||||||||||||||||||||
seq2  GACACAGTTCTGCGGGGGGGTGGGGGG  777