BAC Information

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BAC

Clone NameB6Ng01-130L03
Chromosome13 (Build37)
Map Location 30,400,443 - 30,454,465
singlet/doubletdoublet
Overlap geneAgtr1a
Upstream geneCdkal1, E2f3, Mboat1
Downstream geneUqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266, G630018N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130L03.bB6Ng01-130L03.g
ACCDH931946DH931947
length8921,043
definitionDH931946|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L03, 5' end.DH931947|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,400,443 - 30,401,335)(30,453,397 - 30,454,465)
sequence
gaattcaataccagttgaagtgtgttttacactctggagcaacatttatt
ttttaagattcaggaattgttgggaagtttgttggtatgtgagttattgc
catgtgatgacattcctatgccagcataggcatttaagttctatctactg
ggccattctgaaaaatatgaactatttgaattttgtgtaaagagaagttt
aaaatattttaatattctgacacaaacgaaaaacctattcctggcttcat
gatgtcaaatcactgccctgatattagatgtgttgtaattataacttcaa
aaaaaaaaagacttgataacaattaaaaagaaaatatacactctagaaat
agtcaccagttttatttaattttcttgcttttgttttctttattttaata
atttatattccataaatgtaagtaaatataatgagtaatttataagaaaa
aagatgaaaaattagggacaaatatttagacactttagagaaaggttata
catttttaaatgcttatgataagaaaaaaaatcccatttgtgatggtttg
aatggaaatgtccgccataggcgcgggtatttttagcatctggtcctcag
ctgatggtactgtttggggaggggactgtgtggtgtgaataagaatgact
tctgtgggctcatgtatttgaatgcttagggagtgtcactatgtggtcag
ctaggtgctttggccttgtgggagtagctgtggccttgttaaaggaagtg
ggtcactaaggatgggctttgaggtttcaaaagaccattccaggcctagt
ttccctctctcctcctcctacctctccctcccccttcccctctctcctct
cccccctcttcctcctcttccccttatccccctctaccccct
gaattccaaatgggtggggggaaaggacttgaaagcaagcatgaatatgc
acacatccttctccattcccagacttctcggacaacaccctacttcactc
agtcagcgttatgcaaggaaatgggaagagcccacaagaagaaccaaaaa
gcacagatccagttttaggcatcttagctggcaaatggaacttcacgatg
ataatcattaccaaaaaaaacagaatcaaggccaacgagcagccacactg
tcaacggtgtttcatttgccctttatcaggcatcaaaaatggaagcttga
gaaactgcagcagccagatgaggagttgcttatgaagttctgcctatctg
tcccatattcaggactgggtgaaccacttagcatggtgctagctatcttc
taaaatgctccctccttcggctcacgggtatctgaaatgtctctcatttg
tgtagactgggttagtctcttcggtgacatccctggaactagctacctac
tagaacaagtaggtccaccttaagaacacagagatttaggtgagagaggc
tcttggtctttagcctaggctagcctcaaaatcagtatgcaccacagact
gtctcagcctccctccttagtgcttggattacagatatgacttacttccc
ataggttcaggggttcagattttcaattagtatgtgactctttttttttt
ccaatttggaaactgtttgtaatggatgatgctaaagtgacaaacgggca
ctactctgacatacagtgccattggcaacaggaaatgaggggctacgagg
ccctagcagcatgtccaccccgtggactgtgtgaggacagccatgatgta
gtcaagtgcaacctgtaaactaacttaaagcatgagatttattccaagaa
ttcgatcatatagttttaaaaaagatgttgtttatgcccggctgggagac
accagcatgcctatctcatgactttctgttctaattatgctaggtgtatt
actatcccttcactaagcaaatgcaacgaaagatgggtgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_30400443_30401335
seq2: B6Ng01-130L03.b_46_937

seq1  GAATTCAATACCAGTTGAAGTGTGTTTTACACTCTGGAGCAACATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACCAGTTGAAGTGTGTTTTACACTCTGGAGCAACATTTATT  50

seq1  TTTTAAGATTCAGGAATTGTTGGGAAGTTTGTTGGTATGTGAGTTATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTCAGGAATTGTTGGGAAGTTTGTTGGTATGTGAGTTATTGC  100

seq1  CATGTGATGACATTCCTATGCCAGCATAGGCATTTAAGTTCTATCTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATGACATTCCTATGCCAGCATAGGCATTTAAGTTCTATCTACTG  150

seq1  GGCCATTCTGAAAAATATGAACTATTTGAATTTTGTGTAAAGAGAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCTGAAAAATATGAACTATTTGAATTTTGTGTAAAGAGAAGTTT  200

seq1  AAAATATTTTAATATTCTGACACAAACGAAAAACCTATTCCTGGCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTAATATTCTGACACAAACGAAAAACCTATTCCTGGCTTCAT  250

seq1  GATGTCAAATCACTGCCCTGATATTAGATGTGTTGTAATTATAACTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAAATCACTGCCCTGATATTAGATGTGTTGTAATTATAACTTCAA  300

seq1  AAAAAAAAAGACTTGATAACAATTAAAAAGAAAATATACACTCTAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGACTTGATAACAATTAAAAAGAAAATATACACTCTAGAAAT  350

seq1  AGTCACCAGTTTTATTTAATTTTCTTGCTTTTGTTTTCTTTATTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCAGTTTTATTTAATTTTCTTGCTTTTGTTTTCTTTATTTTAATA  400

seq1  ATTTATATTCCATAAATGTAAGTAAATATAATGAGTAATTTATAAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCCATAAATGTAAGTAAATATAATGAGTAATTTATAAGAAAA  450

seq1  AAGATGAAAAATTAGGGACAAATATTTAGACACTTTAGAGAAAGGTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAAAATTAGGGACAAATATTTAGACACTTTAGAGAAAGGTTATA  500

seq1  CATTTTTAAATGCTTATGATAAGAAAAAAAATCCCATTTGTGATGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAATGCTTATGATAAGAAAAAAAATCCCATTTGTGATGGTTTG  550

seq1  AATGGAAATGTCCGCCATAGGCGCGGGTATTTTTAGCATCTGGTCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATGTCCGCCATAGGCGCGGGTATTTTTAGCATCTGGTCCTCAG  600

seq1  CTGATGGTACTGTTTGGGGAGGGGACTGTGTGGTGTGAATAAGAATGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTACTGTTTGGGGAGGGGACTGTGTGGTGTGAATAAGAATGACT  650

seq1  TCTGTGGGCTCATGTATTTGAATGCTTAGGGAGTGTCACTATGTGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGCTCATGTATTTGAATGCTTAGGGAGTGTCACTATGTGGTCAG  700

seq1  CTAGGTGCTTTGGCCTTGTGGGAGTAGCTGTGGCCTTGTTAAAGGAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGCTTTGGCCTTGTGGGAGTAGCTGTGGCCTTGTTAAAGGAAGTG  750

seq1  GGTCACTAAGGATGGGCTTTGAGGTTTCAAAAGACCATTCCAGGCCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTAAGGATGGGCTTTGAGGTTTCAAAAGACCATTCCAGGCCTAGT  800

seq1  TTCCCTCTCTCCTCCTCCTACCTCTCCCTCCCCCTTCCCCCTCTCTCCTC  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCCTCTCTCCTCCTCCTACCTCTCCCTCCCCCTT-CCCCTCTCTCCTC  849

seq1  TCCCCCCTCTTCCTCCTCTTCCCCTTATCCCCCTCTCCCCCCT  893
      |||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCCCCCTCTTCCTCCTCTTCCCCTTATCCCCCTCTACCCCCT  892

seq1: chr13_30453397_30454465
seq2: B6Ng01-130L03.g_68_1110 (reverse)

seq1  TCAGCACCCCAATCTCTCTGTTGCAATTTGCTTGTAGTGAAAGGGATTAG  50
      |||||||||  |||| || ||||| |||||||  ||||| |||||| |||
seq2  TCAGCACCC--ATCTTTC-GTTGC-ATTTGCT--TAGTG-AAGGGA-TAG  42

seq1  TTATTTACACCCTAGCATAAATTTAAGAACACCAAGAAAAGTCATGAGAT  100
      | |  |||| ||||||||||   | ||||||      |||||||||||||
seq2  TAA--TACA-CCTAGCATAA---TTAGAACA-----GAAAGTCATGAGAT  81

seq1  AGGCATGCCTGGTTTGTCTTCACAGCCCGGCAT-AACAACATTCTTTTTT  149
      ||||||| ||||  |||| || ||||| ||||| ||||||||   |||||
seq2  AGGCATG-CTGG--TGTC-TCCCAGCCGGGCATAAACAACAT--CTTTTT  125

seq1  TAAAACTATATGATCGAATTCTTGGAAT-AATCTCATGCTTTAAGTTAGT  198
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAACTATATGATCGAATTCTTGGAATAAATCTCATGCTTTAAGTTAGT  175

seq1  TTACAGTTTTGCACTTGACTACATTCATGGCTGTCCTCACACAGTCCACG  248
      ||||||  ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTACAG-GTTGCACTTGACTACA-TCATGGCTGTCCTCACACAGTCCACG  223

seq1  GGGTGGACATGCCTGCTAGGGCCTCGTAGCCCCTCATTTCCTGTTGCCAA  298
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGACATG-CTGCTAGGGCCTCGTAGCCCCTCATTTCCTGTTGCCAA  272

seq1  TGGCACTGTATGTCAGAGTAGTGCCCGTTTGTCACTTTAGCATCATCCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGTATGTCAGAGTAGTGCCCGTTTGTCACTTTAGCATCATCCAT  322

seq1  TACAAACAGTTTCCAAATTGGAAAAAAAAAAGAGTCACATACTAATTGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAGTTTCCAAATTGGAAAAAAAAAAGAGTCACATACTAATTGAA  372

seq1  AATCTGAACCCCTGAACCTATGGGAAGTAAGTCATATCTGTAATCCAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAACCCCTGAACCTATGGGAAGTAAGTCATATCTGTAATCCAAGC  422

seq1  ACTAAGGAGGGAGGCTGAGACAGTCTGTGGTGCATACTGATTTTGAGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAGGGAGGCTGAGACAGTCTGTGGTGCATACTGATTTTGAGGCT  472

seq1  AGCCTAGGCTAAAGACCAAGAGCCTCTCTCACCTAAATCTCTGTGTTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGCTAAAGACCAAGAGCCTCTCTCACCTAAATCTCTGTGTTCTT  522

seq1  AAGGTGGACCTACTTGTTCTAGTAGGTAGCTAGTTCCAGGGATGTCACCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGACCTACTTGTTCTAGTAGGTAGCTAGTTCCAGGGATGTCACCG  572

seq1  AAGAGACTAACCCAGTCTACACAAATGAGAGACATTTCAGATACCCGTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTAACCCAGTCTACACAAATGAGAGACATTTCAGATACCCGTGA  622

seq1  GCCGAAGGAGGGAGCATTTTAGAAGATAGCTAGCACCATGCTAAGTGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGGAGGGAGCATTTTAGAAGATAGCTAGCACCATGCTAAGTGGTT  672

seq1  CACCCAGTCCTGAATATGGGACAGATAGGCAGAACTTCATAAGCAACTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTCCTGAATATGGGACAGATAGGCAGAACTTCATAAGCAACTCC  722

seq1  TCATCTGGCTGCTGCAGTTTCTCAAGCTTCCATTTTTGATGCCTGATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGCTGCTGCAGTTTCTCAAGCTTCCATTTTTGATGCCTGATAAA  772

seq1  GGGCAAATGAAACACCGTTGACAGTGTGGCTGCTCGTTGGCCTTGATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATGAAACACCGTTGACAGTGTGGCTGCTCGTTGGCCTTGATTCT  822

seq1  GTTTTTTTTGGTAATGATTATCATCGTGAAGTTCCATTTGCCAGCTAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTGGTAATGATTATCATCGTGAAGTTCCATTTGCCAGCTAAGA  872

seq1  TGCCTAAAACTGGATCTGTGCTTTTTGGTTCTTCTTGTGGGCTCTTCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAACTGGATCTGTGCTTTTTGGTTCTTCTTGTGGGCTCTTCCCA  922

seq1  TTTCCTTGCATAACGCTGACTGAGTGAAGTAGGGTGTTGTCCGAGAAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGCATAACGCTGACTGAGTGAAGTAGGGTGTTGTCCGAGAAGTC  972

seq1  TGGGAATGGAGAAGGATGTGTGCATATTCATGCTTGCTTTCAAGTCCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGGAGAAGGATGTGTGCATATTCATGCTTGCTTTCAAGTCCTTT  1022

seq1  CCCCCCACCCATTTGGAATTC  1069
      |||||||||||||||||||||
seq2  CCCCCCACCCATTTGGAATTC  1043