BAC Information

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BAC

Clone NameB6Ng01-130M21
Chromosome13 (Build37)
Map Location 42,243,085 - 42,406,091
singlet/doubletdoublet
Overlap geneHivep1, Edn1
Upstream geneLOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik, LOC100039272
Downstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130M21.bB6Ng01-130M21.g
ACCDH932025DH932026
length1,136531
definitionDH932025|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M21, 5' end.DH932026|Mus musculus domesticus DNA, BAC clone: B6Ng01-130M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,243,085 - 42,244,228)(42,405,557 - 42,406,091)
sequence
gaattcatcacagtttcccagttttcaagttctgttttgatttttcttgt
ttccctggtgacttctttttcctctttagttagttagaattgtattgctt
aatttccatacagctggggattttccatctatctcacattatttatttct
agttgaattttgttgcagctagaagacatggtgtgctcatttaacttttt
atgagtctagtttgaccttatcggatacagtctgcttttattgctccaga
taattcacttttattttcatttactaaggttattattattaattatatta
atgtgtatgatgcagggcattgaacccagtgccctgaattttgagcattc
actctgacattgagctatactcctgaccatgctcactgccctgacattct
atgaatgagagtgtgggctccatcaaggtgtcaggggctgtttctttcta
gaggtagtgagaataatgtgttcttgctcacttagcctattggcagcatt
gggtattgtggctagactctcaagggcagtacaaccattggatcagcgtt
tcttttctccagtcattctctcattcgtatttcttctttattttggtaca
gcaggttgaacccaacagtttgcatatgctaagcacctgctgtctgagcc
agctttgcttgctgtaacaaaatacctgagactgttgttaaaggaaggaa
aggtttttccaggttcagtttcttggtgacccagctctatgcctttgtac
aggaggcaaaacagagaatcttggagagactgttcagctcctgacaacct
gccacagaggaacagaaaggccagggacttctctttgtgaagacctgttc
cacagtatacagtctgattatgaacccattagttggtcaatcctctgaag
aagtcttgagtcctcacgatcagtccagctaactctccaaagttccacct
ctggagcacaattgcttggggtcaggacttctgggctcctggagtctgag
gacatctgcatctacagtctaccctgggctcttgctcttcggacaccctg
ggctctttgtagcttgtgacagtagggcaggcgatcttctaggccagttc
ctttcctgactgtctgttagcaggactctgctgtga
cctttgactcattggagtttcacttggtaaataaatctaaacgtgattga
atgtttttctagctactcatttaatgatgcaataagacttatccacctct
tcaagggcctctcaccccaccccacaggctgccattttatttatctgtag
tgccaggaatccagcccaggactggtggaagctagacaaatgctttacca
gagaactccagctctgactggatcagctaactttatcagagaagctggga
ggtgaagctttcctggagactgctttactcacccaccccaccagcctccc
agaaccccctttttataggtttgcttgagtgcctcttccagatgaacccc
agaaatctggaggtgaaccagcgggctctgtgatgatgcccaggcttgcc
agcttttccgaaggactgcatgacttcagttcactcccccctccccccac
ccccacccccacccccaccccgtctctgggtctctgttttctttttcttt
ttcaaaaaagaaacaaccagcaaagtttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_42243085_42244228
seq2: B6Ng01-130M21.b_45_1180

seq1  GAATTCATCACAGTTTCCCAGTTTTCAAGTTCTGTTTTGATTTTTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACAGTTTCCCAGTTTTCAAGTTCTGTTTTGATTTTTCTTGT  50

seq1  TTCCCTGGTGACTTCTTTTTCCTCTTTAGTTAGTTAGAATTGTATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGTGACTTCTTTTTCCTCTTTAGTTAGTTAGAATTGTATTGCTT  100

seq1  AATTTCCATACAGCTGGGGATTTTCCATCTATCTCACATTATTTATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCATACAGCTGGGGATTTTCCATCTATCTCACATTATTTATTTCT  150

seq1  AGTTGAATTTTGTTGCAGCTAGAAGACATGGTGTGCTCATTTAACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTTGTTGCAGCTAGAAGACATGGTGTGCTCATTTAACTTTTT  200

seq1  ATGAGTCTAGTTTGACCTTATCGGATACAGTCTGCTTTTATTGCTCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTAGTTTGACCTTATCGGATACAGTCTGCTTTTATTGCTCCAGA  250

seq1  TAATTCACTTTTATTTTCATTTACTAAGGTTATTATTATTAATTATATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACTTTTATTTTCATTTACTAAGGTTATTATTATTAATTATATTA  300

seq1  ATGTGTATGATGCAGGGCATTGAACCCAGTGCCCTGAATTTTGAGCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGATGCAGGGCATTGAACCCAGTGCCCTGAATTTTGAGCATTC  350

seq1  ACTCTGACATTGAGCTATACTCCTGACCATGCTCACTGCCCTGACATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACATTGAGCTATACTCCTGACCATGCTCACTGCCCTGACATTCT  400

seq1  ATGAATGAGAGTGTGGGCTCCATCAAGGTGTCAGGGGCTGTTTCTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAGAGTGTGGGCTCCATCAAGGTGTCAGGGGCTGTTTCTTTCTA  450

seq1  GAGGTAGTGAGAATAATGTGTTCTTGCTCACTTAGCCTATTGGCAGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGTGAGAATAATGTGTTCTTGCTCACTTAGCCTATTGGCAGCATT  500

seq1  GGGTATTGTGGCTAGACTCTCAAGGGCAGTACAACCATTGGATCAGCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTGTGGCTAGACTCTCAAGGGCAGTACAACCATTGGATCAGCGTT  550

seq1  TCTTTTCTCCAGTCATTCTCTCATTCGTATTTCTTCTTTATTTTGGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCCAGTCATTCTCTCATTCGTATTTCTTCTTTATTTTGGTACA  600

seq1  GCAGGTTGAACCCAACAGTTTGCATATGCTAAGCACCTGCTGTCTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTGAACCCAACAGTTTGCATATGCTAAGCACCTGCTGTCTGAGCC  650

seq1  AGCTTTGCTTGCTGTAACAAAATACCTGAGACTGTTGTTAAAGGAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCTTGCTGTAACAAAATACCTGAGACTGTTGTTAAAGGAAGGAA  700

seq1  AGGTTTTTCCAGGTTCAGTTTCTTGGTGACCCAGCTCTATGCCTTTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTCCAGGTTCAGTTTCTTGGTGACCCAGCTCTATGCCTTTGTAC  750

seq1  AGGAGGCAAAACAGAGAATCTTGGAGAGACTGTTCAGCTCCTGACAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAAAACAGAGAATCTTGGAGAGACTGTTCAGCTCCTGACAACCT  800

seq1  GCCACAGAGGAACAGAAAGGCCAGGGACTTCTCTTTGTGAAGACCTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGGAACAGAAAGGCCAGGGACTTCTCTTTGTGAAGACCTGTTC  850

seq1  CACAGTATTACAGTCTGATTATGAACCCATTAGTTGGTCAATCCCCTGAA  900
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  CACAGTA-TACAGTCTGATTATGAACCCATTAGTTGGTCAATCCTCTGAA  899

seq1  GAAGTCTTGAGTCCTCACGATCAGTCCAGCTAACTCTCCAAAGTTCCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTGAGTCCTCACGATCAGTCCAGCTAACTCTCCAAAGTTCCACC  949

seq1  TCT-GAGCACAATTGCCTTGGGGTCAGGAC-TCTGGGCCCCT-GAGTCTG  997
      ||| ||||||||||| |||||||||||||| ||||||| ||| |||||||
seq2  TCTGGAGCACAATTG-CTTGGGGTCAGGACTTCTGGGCTCCTGGAGTCTG  998

seq1  AGGACACTCTGCATCTACAGTCTACCCTGGGCTCTCGCTCTCCGGCACAC  1047
      |||||| |||||||||||||||||||||||||||| ||||| ||| ||||
seq2  AGGACA-TCTGCATCTACAGTCTACCCTGGGCTCTTGCTCTTCGG-ACAC  1046

seq1  CCTGGCTTCTCTGTAGCTTTGTAGCCAGTAGGGGCAGGTCGAATCTTCTA  1097
      |||||  ||| |||||| |||| | ||||| ||||||| || ||||||||
seq2  CCTGGGCTCTTTGTAGC-TTGT-GACAGTA-GGGCAGG-CG-ATCTTCTA  1091

seq1  GCCCAGTCTCTTACCTGACTGCTGGTTAGCCAGAGACTCTGCTGTGA  1144
      | |||||  ||| ||||||||   ||||| ||| |||||||||||||
seq2  GGCCAGTTCCTTTCCTGACTGTCTGTTAG-CAG-GACTCTGCTGTGA  1136

seq1: chr13_42405557_42406091
seq2: B6Ng01-130M21.g_69_605 (reverse)

seq1  TTGGAACTTTGCTGGTTGTTTCTTTTCTGGAAA--GAAAAGAAAACAGAG  48
      ||| |||||||||||||||||||||| || |||   ||||||||||||||
seq2  TTGAAACTTTGCTGGTTGTTTCTTTTTTGAAAAAGAAAAAGAAAACAGAG  50

seq1  ACCCAGAGACGGGGTGGGGGTGGGGGTGTGGGTGGGGGGAGGGGGGAGTG  98
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCCAGAGACGGGGTGGGGGTGGGGGTGGGGGTGGGGGGAGGGGGGAGTG  100

seq1  AACTGAAGTCATGCAGTCCTTCGGAAAAGCTGGCAAGCCTGGGCATCATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGTCATGCAGTCCTTCGGAAAAGCTGGCAAGCCTGGGCATCATC  150

seq1  ACAGAGCCCGCTGGTTCACCTCCAGATTTCTGGGGTTCATCTGGAAGAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCCGCTGGTTCACCTCCAGATTTCTGGGGTTCATCTGGAAGAGG  200

seq1  CACTCAAGCAAACCTATAAAAAGGGGGTTCTGGGAGGCTGGTGGGGTGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGCAAACCTATAAAAAGGGGGTTCTGGGAGGCTGGTGGGGTGGG  250

seq1  TGAGTAAAGCAGTCTCCAGGAAAGCTTCACCTCCCAGCTTCTCTGATAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAGCAGTCTCCAGGAAAGCTTCACCTCCCAGCTTCTCTGATAAA  300

seq1  GTTAGCTGATCCAGTCAGAGCTGGAGTTCTCTGGTAAAGCATTTGTCTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGATCCAGTCAGAGCTGGAGTTCTCTGGTAAAGCATTTGTCTAG  350

seq1  CTTCCACCAGTCCTGGGCTGGATTCCTGGCACTACAGATAAATAAAATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCAGTCCTGGGCTGGATTCCTGGCACTACAGATAAATAAAATGG  400

seq1  CAGCCTGTGGGGTGGGGTGAGAGGCCCTTGAAGAGGTGGATAAGTCTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGGGGTGGGGTGAGAGGCCCTTGAAGAGGTGGATAAGTCTTAT  450

seq1  TGCATCATTAAATGAGTAGCTAGAAAAACATTCAATCACGTTTAGATTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTAAATGAGTAGCTAGAAAAACATTCAATCACGTTTAGATTTA  500

seq1  TTTACCAAGTGAAACTCCAATGAGTCAAAGGGAATTC  535
      |||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGTGAAACTCCAATGAGTCAAAGGGAATTC  537