BAC Information

Click to search

BAC

Clone NameB6Ng01-131M24
Chromosome13 (Build37)
Map Location 46,320,896 - 46,468,240
singlet/doubletdoublet
Overlap geneGm1574
Upstream geneLOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282
Downstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131M24.bB6Ng01-131M24.g
ACCDH932776DH932777
length1,105308
definitionDH932776|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M24, 5' end.DH932777|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,320,896 - 46,322,011)(46,467,933 - 46,468,240)
sequence
gaattccacacttaatttttttttttttttttttttttttggttttttga
gacagggtttctctgtgtagtcctggctgtcctggaactcactctgtaga
ccaggctggcctcgaactcagaaatccacctgcctctgcctcccaagtgc
tgggattaaaggagtgcgccatcacgcccagcccacacttaatttttaat
ttggaatgggacattgatataagttgtaaaatctgaataattcttttttt
tctagggcaacaaatccaacaatccatttttctgaaacaaacgttgagag
actgtagtgagcaagtcacataaatatgattctccttggctccatcccta
ttcaggccacacatatcactagctcaggaatgagatttttgacttagtaa
gtggcccagtttgacttgtattgctgtgattaaacactaggagcaaaagc
agagaggagcagagagtatgcttgactgacagctccacatcacagtctat
cgtggagggaagcctagacgggcaggaacagaagcggaaacctggaggca
ggagcggaagcaaagacaggggaagaaagctgcttctggcttgctctcca
ccactggttcagtgcgagcttttttatatgagccaagaccacctgtttca
ggtgacattgcctcgtcactcccacattgatcactagtcaataaaatgtc
cccaccaacttgcctacaggccagtctgatggaggcagttcctcatgtga
ggctccctcttcccggatggctctagcttgtgtcaacttgacaaacaaaa
acaaaaaaacggaaattcaaaactcaccagaactctttgtctctccaccc
tatacccctgctctcccctgtctctctctcctctctgtgtcacatctctc
ctccccagatactcatgcattggtctctatctctctcctcttcatgtcac
atctctctctcagatggccatgcttggccactttgctcaccacaggctcc
taccatgatgatttttttcaggatggtcagaaacaatagtattcagtgga
ctaggactgaaatcttagagaatactcaacagaatctttcttttcgttgt
ttctc
ttttcagtgtgctaaattagctagcatttcatggggagacggctggactt
tggcttgttaacagatgcagggggtttggttttgtttgtttgttttaatt
ccctcatctttgaaactgagatggcaatgggacaccaacatgaataaaac
aagatggtatttggacacttagagctgaacaaaagcaactggacccggga
gtgtgttacttattcatggcatctctttgtcaagttacctaccctctgag
gaggcctgagatgctctctgcactatcagctggagggggggggcgatggg
gatgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46320896_46322011
seq2: B6Ng01-131M24.b_45_1149

seq1  GAATTCCACACTTAATTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTTAATTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGA  50

seq1  GACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGA  100

seq1  CCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGC  150

seq1  TGGGATTAAAGGAGTGCGCCATCACGCCCAGCCCACACTTAATTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGAGTGCGCCATCACGCCCAGCCCACACTTAATTTTTAAT  200

seq1  TTGGAATGGGACATTGATATAAGTTGTAAAATCTGAATAATTCTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGGGACATTGATATAAGTTGTAAAATCTGAATAATTCTTTTTTT  250

seq1  TCTAGGGCAACAAATCCAACAATCCATTTTTCTGAAACAAACGTTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCAACAAATCCAACAATCCATTTTTCTGAAACAAACGTTGAGAG  300

seq1  ACTGTAGTGAGCAAGTCACATAAATATGATTCTCCTTGGCTCCATCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGTGAGCAAGTCACATAAATATGATTCTCCTTGGCTCCATCCCTA  350

seq1  TTCAGGCCACACATATCACTAGCTCAGGAATGAGATTTTTGACTTAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCACACATATCACTAGCTCAGGAATGAGATTTTTGACTTAGTAA  400

seq1  GTGGCCCAGTTTGACTTGTATTGCTGTGATTAAACACTAGGAGCAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAGTTTGACTTGTATTGCTGTGATTAAACACTAGGAGCAAAAGC  450

seq1  AGAGAGGAGCAGAGAGTATGCTTGACTGACAGCTCCACATCACAGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGCAGAGAGTATGCTTGACTGACAGCTCCACATCACAGTCTAT  500

seq1  CGTGGAGGGAAGCCTAGACGGGCAGGAACAGAAGCGGAAACCTGGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAGGGAAGCCTAGACGGGCAGGAACAGAAGCGGAAACCTGGAGGCA  550

seq1  GGAGCGGAAGCAAAGACAGGGGAAGAAAGCTGCTTCTGGCTTGCTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGAAGCAAAGACAGGGGAAGAAAGCTGCTTCTGGCTTGCTCTCCA  600

seq1  CCACTGGTTCAGTGCGAGCTTTTTTATATGAGCCAAGACCACCTGTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTTCAGTGCGAGCTTTTTTATATGAGCCAAGACCACCTGTTTCA  650

seq1  GGTGACATTGCCTCGTCACTCCCACATTGATCACTAGTCAATAAAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTGCCTCGTCACTCCCACATTGATCACTAGTCAATAAAATGTC  700

seq1  CCCACCAACTTGCCTACAGGCCAGTCTGATGGAGGCAGTTCCTCATGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAACTTGCCTACAGGCCAGTCTGATGGAGGCAGTTCCTCATGTGA  750

seq1  GGCTCCCTCTTCCCGGATGGCTCTAGCTTGTGTCAACTTGACAAAACAAA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTCCCTCTTCCCGGATGGCTCTAGCTTGTGTCAACTTGAC-AAACAAA  799

seq1  AACAAAAAAACGGAAATTCAAAACTCACCAGAACTCTTTGTCTCTCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAACGGAAATTCAAAACTCACCAGAACTCTTTGTCTCTCCACC  849

seq1  CTATACCCCTGCTCTCCCCTGTCTCTCTCTCCTCTCTGTGTCACATCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCCTGCTCTCCCCTGTCTCTCTCTCCTCTCTGTGTCACATCTCT  899

seq1  CCTCCCCAGATACTCATGCATTGGTCTCCTATCTCTCTCCTCTCCATGTC  950
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  CCTCCCCAGATACTCATGCATTGGTCT-CTATCTCTCTCCTCTTCATGTC  948

seq1  ACATCTCTCCTCTCCAGATGGCCATGCTTGGCCACTTTGCTCAACCACAG  1000
      |||||||| |||| |||||||||||||||||||||||||||| |||||||
seq2  ACATCTCT-CTCT-CAGATGGCCATGCTTGGCCACTTTGCTC-ACCACAG  995

seq1  GCTCCCTACCATGATGATTTTCTTCAGGATGGTCCAGAAACAATAGTATC  1050
      ||| ||||||||||||||||| ||||||||||| ||||||||||||||| 
seq2  GCT-CCTACCATGATGATTTTTTTCAGGATGGT-CAGAAACAATAGTATT  1043

seq1  AAGT-GACTAGGACTGAAATCTTTAGAGATATTACTCAACAGAAATCTTT  1099
       ||| ||||||||||||||||||   ||| | |||||||||| |||||||
seq2  CAGTGGACTAGGACTGAAATCTT---AGAGAATACTCAACAG-AATCTTT  1089

seq1  CTTTTCAGTTGTTTCTC  1116
      |||||| ||||||||||
seq2  CTTTTC-GTTGTTTCTC  1105

seq1: chr13_46467933_46468240
seq2: B6Ng01-131M24.g_74_381 (reverse)

seq1  TCCCCATCCCCATCGCCCCCCCCCTCCAGCTGATAGTGCAGAGAGCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCCCATCGCCCCCCCCCTCCAGCTGATAGTGCAGAGAGCATCT  50

seq1  CAGGCCTCCTCAGAGGGTAGGTAACTTGACAAAGAGATGCCATGAATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCCTCAGAGGGTAGGTAACTTGACAAAGAGATGCCATGAATAAG  100

seq1  TAACACACTCCCGGGTCCAGTTGCTTTTGTTCAGCTCTAAGTGTCCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACTCCCGGGTCCAGTTGCTTTTGTTCAGCTCTAAGTGTCCAAAT  150

seq1  ACCATCTTGTTTTATTCATGTTGGTGTCCCATTGCCATCTCAGTTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTGTTTTATTCATGTTGGTGTCCCATTGCCATCTCAGTTTCAAA  200

seq1  GATGAGGGAATTAAAACAAACAAACAAAACCAAACCCCCTGCATCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGAATTAAAACAAACAAACAAAACCAAACCCCCTGCATCTGTTA  250

seq1  ACAAGCCAAAGTCCAGCCGTCTCCCCATGAAATGCTAGCTAATTTAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAAAGTCCAGCCGTCTCCCCATGAAATGCTAGCTAATTTAGCAC  300

seq1  ACTGAAAA  308
      ||||||||
seq2  ACTGAAAA  308