BAC Information

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BAC

Clone NameB6Ng01-131O21
Chromosome13 (Build37)13 (Build37)
Map Location 50,972,311 - 50,973,23349,809,434 - 49,810,494
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190
Downstream geneEG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131O21.bB6Ng01-131O21.g
ACCDH932864DH932865
length1,0921,063
definitionDH932864|Mus musculus domesticus DNA, BAC clone: B6Ng01-131O21, 5' end.DH932865|Mus musculus domesticus DNA, BAC clone: B6Ng01-131O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,972,311 - 50,973,233)(49,809,434 - 49,810,494)
sequence
gaattccttgttccaaacagcaattggttattgcagaatattgatatttg
acctattacataccatcatatgaagtaaaattgataattatcctaagata
agttaaaaatttataaattcatgcatgcatgcatcccatttactgtgttt
aaaaaatagcctttatatgagaaaaaagtatatgtaaatcaaatcacatg
cttatcctgtttcagcacagataattaaattgtgtgctgaagatggtatt
taaaaatgttgaacaatcaaactttaagttgtatattaatagtcaatatt
atatctcagagcttgcaattgcttatgcaatttataagaaaaaatactgt
ttctttaagaaaattgtttttgggcagttaagaaattgtcctaagttgcc
tggaaaagacctccaggatttgcttttgtgttatagaggtttacataaag
ctttaactaataaagattacagatagctcctgaaaagagatcaagattct
tatatttatttgagttttaaaagatagttatttacagaaacaacttaaag
attttctctaatttctgattaataaataaataaattatacacaagtgact
ataatgacttttcaagcattctagttacaatctctcttcaagagaaacaa
ttgaaagtgtaattagtcactgttcatgttatattaaaactgactaacag
ttcagtatctaaaattctgatgaaaatacaagattatattttgatgcgtg
agcacccttttttatattcaacatattagagcacatgcatcattacctgg
ctcctattcaagggaaaaattcctaagctgaagttagccactgacaagaa
agactaaacagataagtcctagctgtttattttgtaaatctaaatagtat
atatgactgggctgatagccacctagaaacaatgttctgttcttattagt
caaaacattcatgacagttttgccatcagatgaatgtgactcatctgact
ggccttcttatattcctcagacagcattgtagacgtgctcatcacactct
caagtcctatttataacaaaaaggggataagctatgacgcaa
gaattcctttgctgcatcaactctattcagtcagtaaaaatacacagtga
ttctccctgtgttcctgggacccatcttctgtagccatcttcccccacag
tagagcatggctttgtttttaacaaagctgtcactgtttagttggtacca
gcttctaatttgcacaggtaacagttttcgctgttgtgcgctgggatgcc
aagctattgggcatgtgttttaaagtctcgatcactgtgattaaaacgcc
atgaccaatacagcttgagggtcgtattctgtggtcacggtctgtgaggg
agtaatggcagatactgctccacccctaccttggaactcccttaaagacg
tagctgtaccatggcgttaaaagactttacttggcttagtgcacttttcc
tgcaagcctggctacttgactgacttggatccctggaacccacatcaaga
tggaaggagatgtctgatctctgcttgagtgccatgacccatgcctccca
taaacacacacacacacagacacacacacacgcacacacaccaagctcat
gtgcatacacagtcacaaaaataacatgaatataaaaggcctaacagata
gacaccaaccacccctgccattgcgactttcaccagtacacatttgaccc
tcttccattagcacttgcgtgtctgcttgcagtccccatccgtctataag
agcaactctatttactcacttacttggtatctcctttctgttttacaagt
gatggccaaaaaatgagcaagcggaaaaagaactacccagatccagtttc
catcatcgataagtatggtgcggacgccctcaggtacaaagcagccctgt
gctcagtgtatctcgtgtcatcatcctcagagtgccttgcaattatgctt
taactgtcgggcctctgtatgggggagttaggcttttgtagttggtgatt
tccaagtctagaagtccttttggaggactaaaactgtcccggatgccatc
agccattccatgacctccggggcggtggcatactgtctctactacagctc
ctttctaggtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50972311_50973233
seq2: B6Ng01-131O21.b_240_1141

seq1  AAATCAAATGCTTATCCTGTTTCAGCACAGATAATTAAATTGTGTGCTGA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATGCTTATCCTGTTTCAGCACAGATAATTAAATTGTGTGCTGA  50

seq1  AGATGGTGTTTAAAAATGTTGAACAATCAAACTTTAAGTTGTATATTAAT  100
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTATTTAAAAATGTTGAACAATCAAACTTTAAGTTGTATATTAAT  100

seq1  AGTCAATATTATATCTCAGAGCTTGCAATTGCTTATGCAATTTATAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATATTATATCTCAGAGCTTGCAATTGCTTATGCAATTTATAAGAA  150

seq1  AAAATACTGTTTCTTTAAGAAAATTGTTTTTGGGCAGTTAAGAAATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTGTTTCTTTAAGAAAATTGTTTTTGGGCAGTTAAGAAATTGTC  200

seq1  CTAAGTTGCCTGGAAAAGACCCCCAGGATTTGCTTTTGTGTTATAGAGGT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAAGTTGCCTGGAAAAGACCTCCAGGATTTGCTTTTGTGTTATAGAGGT  250

seq1  TTACATAAAGCTTTAACTAATAAAGATTACAGATAGCTCCTGAAAAGATA  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTACATAAAGCTTTAACTAATAAAGATTACAGATAGCTCCTGAAAAGAGA  300

seq1  CAAAGTCGAGATTCTTATATTTATTTGGGTTTTAAAAGATAGTTATTTAC  350
           || ||||||||||||||||||| ||||||||||||||||||||||
seq2  -----TCAAGATTCTTATATTTATTTGAGTTTTAAAAGATAGTTATTTAC  345

seq1  AGAGACAACTTAAAGATTTTCTCTAATTTCTGATTAATAAATAAATAAAT  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACTTAAAGATTTTCTCTAATTTCTGATTAATAAATAAATAAAT  395

seq1  TATACACAAGTGACTATAATGACTTTTCAAGCATTCTAGTTACAATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAGTGACTATAATGACTTTTCAAGCATTCTAGTTACAATCTCT  445

seq1  CTTCAAGAGAAACAATTGAAAGTGTAATTAGTCACTATTCATGTTATATT  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTCAAGAGAAACAATTGAAAGTGTAATTAGTCACTGTTCATGTTATATT  495

seq1  AAAACTGACTAACAGTTCAGTATCTAAAATTTTGATGAAAATACAAGATT  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAACTGACTAACAGTTCAGTATCTAAAATTCTGATGAAAATACAAGATT  545

seq1  GTATTTTGATGCGTGAGCACCC-TTTTTATATTCAACATATTAGAGCACA  599
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATTTTGATGCGTGAGCACCCTTTTTTATATTCAACATATTAGAGCACA  595

seq1  TGCATCATTACCTGGCTCCTATTCAAGGGAAAAATTCCTAAGCTGAAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTACCTGGCTCCTATTCAAGGGAAAAATTCCTAAGCTGAAGTT  645

seq1  AGCCACTGACAAGAAAGTCTAAACAGATAAGTCCTAGCTGTTTATTTTGT  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCCACTGACAAGAAAGACTAAACAGATAAGTCCTAGCTGTTTATTTTGT  695

seq1  AAATCTAAATAGTATATATGACTGGGCTGAATAGCCACCCTAGAAACAAA  749
      ||||||||||||||||||||||||||||| ||||||| ||||||||| ||
seq2  AAATCTAAATAGTATATATGACTGGGCTG-ATAGCCA-CCTAGAAAC-AA  742

seq1  TGTTCTGTTCTTGTTAGTCAAAAACATTCATGACAGTTTTGCCATCAGAT  799
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TGTTCTGTTCTTATTAGTC-AAAACATTCATGACAGTTTTGCCATCAGAT  791

seq1  GAATGTGACTCATCTGACTGGCCTTCCTTATAATCCTCAAGGACAAGGCA  849
      ||||||||||||||||||||||||| |||||| ||||||  ||||  |||
seq2  GAATGTGACTCATCTGACTGGCCTT-CTTATATTCCTCA--GACA--GCA  836

seq1  TTGTAGAACGTGCCCATTGCACTATCAAGTCCTATCTAATTAAACAAAAA  899
      |||||| |||||| |||  |||| ||||||||||| ||    ||||||||
seq2  TTGTAG-ACGTGCTCATCACACTCTCAAGTCCTATTTA---TAACAAAAA  882

seq1  GGGGGGATAAAGGCTATGATGCAA  923
        ||||||||  ||||||| ||||
seq2  --GGGGATAA--GCTATGACGCAA  902

seq1: chr13_49809434_49810494
seq2: B6Ng01-131O21.g_68_1130

seq1  GAATTCCTTTGCTGCATCAACTCTATTCAGTCAGTAAAAATACACAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGCTGCATCAACTCTATTCAGTCAGTAAAAATACACAGTGA  50

seq1  TTCTCCCTGTGTTCCTGGGACCCATCTTCTGTAGCCATCTTCCCCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGTGTTCCTGGGACCCATCTTCTGTAGCCATCTTCCCCCACAG  100

seq1  TAGAGCATGGCTTTGTTTTTAACAAAGCTGTCACTGTTTAGTTGGTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCATGGCTTTGTTTTTAACAAAGCTGTCACTGTTTAGTTGGTACCA  150

seq1  GCTTCTAATTTGCACAGGTAACAGTTTTCGCTGTTGTGCGCTGGGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATTTGCACAGGTAACAGTTTTCGCTGTTGTGCGCTGGGATGCC  200

seq1  AAGCTATTGGGCATGTGTTTTAAAGTCTCGATCACTGTGATTAAAACGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTGGGCATGTGTTTTAAAGTCTCGATCACTGTGATTAAAACGCC  250

seq1  ATGACCAATACAGCTTGAGGGTCGTATTCTGTGGTCACGGTCTGTGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAATACAGCTTGAGGGTCGTATTCTGTGGTCACGGTCTGTGAGGG  300

seq1  AGTAATGGCAGATACTGCTCCACCCCTACCTTGGAACTCCCTTAAAGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGGCAGATACTGCTCCACCCCTACCTTGGAACTCCCTTAAAGACG  350

seq1  TAGCTGTACCATGGCGTTAAAAGACTTTACTTGGCTTAGTGCACTTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTACCATGGCGTTAAAAGACTTTACTTGGCTTAGTGCACTTTTCC  400

seq1  TGCAAGCCTGGCTACTTGACTGACTTGGATCCCTGGAACCCACATCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCTGGCTACTTGACTGACTTGGATCCCTGGAACCCACATCAAGA  450

seq1  TGGAAGGAGATGTCTGATCTCTGCTTGAGTGCCATGACCCATGCCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAGATGTCTGATCTCTGCTTGAGTGCCATGACCCATGCCTCCCA  500

seq1  TAAACACACACACACACAGACACACACACACGCACACACACCAAGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACACACACACAGACACACACACACGCACACACACCAAGCTCAT  550

seq1  GTGCATACACAGTCACAAAAATAACATGAATATAAAAGGCCTAACAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATACACAGTCACAAAAATAACATGAATATAAAAGGCCTAACAGATA  600

seq1  GACACCAACCACCCCTGCCATTGCGACTTTCACCAGTACACATTTGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAACCACCCCTGCCATTGCGACTTTCACCAGTACACATTTGACCC  650

seq1  TCTTCCATTAGCACTTGCGTGTCTGCTTGCAGTCCCCATCCGTCTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATTAGCACTTGCGTGTCTGCTTGCAGTCCCCATCCGTCTATAAG  700

seq1  AGCAACTCTATTTACTCACTTACTTGGTATCTCCTTTCTGTTTTACAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCTATTTACTCACTTACTTGGTATCTCCTTTCTGTTTTACAAGT  750

seq1  GATGGCCAAAAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAAAAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTC  800

seq1  CATCATCGATAAGTATGGTGCGGACGCCCTCAGGTACAAAGCAGCCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCGATAAGTATGGTGCGGACGCCCTCAGGTACAAAGCAGCCCTGT  850

seq1  GCTCAGGTGTATCTCGTGTCATCATCCTCAGAGTGCCTTGCAATTATGCT  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCA-GTGTATCTCGTGTCATCATCCTCAGAGTGCCTTGCAATTATGCT  899

seq1  TTAACTGTCGGGCCTCTGTAT-GGGGAGTTAGGCTTTTGTAGTTGGTGAT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAACTGTCGGGCCTCTGTATGGGGGAGTTAGGCTTTTGTAGTTGGTGAT  949

seq1  TTCCAAGTCTAGAAGTC--TTTTGAGGACTAAAAACTGTCCCGGATGCCA  997
      |||||||||||||||||  ||| ||||||| |||||||||||||||||||
seq2  TTCCAAGTCTAGAAGTCCTTTTGGAGGACT-AAAACTGTCCCGGATGCCA  998

seq1  TCAGCCA-TCCATGACCTCCCGGGCGTGTGCATACTGTCTCTACCTCAGC  1046
      ||||||| |||||||||||| |||||   |||||||||||||||  ||||
seq2  TCAGCCATTCCATGACCTCCGGGGCGGTGGCATACTGTCTCTACTACAGC  1048

seq1  TCCTTTCTAGGTCCC  1061
      |||||||||||||||
seq2  TCCTTTCTAGGTCCC  1063