BAC Information

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BAC

Clone NameB6Ng01-131P13
Chromosome13 (Build37)
Map Location 62,436,470 - 62,437,619
singlet/doubletsinglet
Overlap genenone
Upstream geneCts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437
Downstream geneLOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131P13.bB6Ng01-131P13.g
ACCDH932896DH932897
length1,1381,222
definitionDH932896|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P13, 5' end.DH932897|Mus musculus domesticus DNA, BAC clone: B6Ng01-131P13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtttttgagctataatttttaaattttattttatatgtatt
ttaattttattttgcatgcatgtgtttgagaacagaaggcaacagcaaat
aattcccaataatagttaacagccaggtagtttggggaatggaacctctg
tctactgtaacaatatccagtttatgttaactgctaggctgactgtctga
caaggtgcttatttaaattgtacttttgtacatgttaagtaaaaatattg
cattattttcttcttcattttctattctttatccattcccaaaagtgttc
caatatcttctttgttaaggatgaaaaataattcacaaatacatgaagaa
aacctgctgtgtgcatttcccttgactgtgtatttgattttttcagggat
gaatagtttgcattgaatatgccatgaggaagctaatcccagcctgagga
taattttttgacttatgggagaatctgctcctgaagtgacctaggatatc
ttgtgcaaaaaacatgaagaatagaaaacttagagtggtaaacatctcag
ataacacttattggtgtcatgaccccgagcttctggagctgcagggaaga
ctatggctactgtcctgagacaatcacagtctgccttggctctctggccc
ttacaacacaccctgttgaccacttttaacttggatgactgtgaaatcct
ggtgtcctccctctgtaagtaccataaatataggcatgtgcaaccatgcc
tggtttaggtggcttccacttcaattactaattcattagaattacagcgt
gtgaaagatgaatagttccaataaagtatattcagaagcaacttaactct
gtgaccctcagttttaccatctgtagaataacctagaagtctacccttga
gccaggtggtgatggtgcatgcctttaatcccagcacttgggaggaagag
gcagcagatttctgagttcaaggacagcctggtctacaagtgagttccag
gacagtcaggctgttcagagaatccttgtctgaaaaaaaaagtctactct
ggttttggtgattataccgatgcaccataatcaaataatattgttcttag
ttgggagagagcttttaggtaggaactcacttatgatg
gaattctccttaaaaagggacggggtttcgttttctctctctcttgcttc
ttgctctcttgcttctctctcttgcttcttgctctcttgcttcctgcacc
ctggctcctgaagatgtaagaaataaagctttgccgcagaagattctggt
ctgtggtgttcttcctggccggtcgtgagaacgcgtctaataacaattgg
tgccgaattccgggacgagaaaaaactcgggactggcgcaaggaagatcc
ctcattccagaaccagaactgcgggtcgcggtaataaaggttcccgtaaa
gcagactgttaagaaggattcaactgtatgaattcagaacttttcagctg
gggaacgagagtaccagtgagtacagctttacgaggtaagtctgatcttg
aactttctaacgaaattcaagacagtctatcagaagtaaagtggaatatg
tttggccttgaattttttctggtgttaggagcccttttgttccttttcac
atgttatcaagtgattaagatagggctgaaaattctagaggaaattcagg
acaagctatcagaagtaaagcggggagagagagtaggagcaaagaggaaa
tatggtacacaaaataagtatacaggcctttccaagggtcttgaacccga
ggaaaagttaaggttaggtaggaatacctggagagagattagaagaaaaa
gaggaaaaagggaaaagaagaaagatcaattagcggaggtctctaggaaa
aggagcctgtgctcatcgctggatgggctcggggagccagctcttagtag
ctctgaagcaggtgaagaatcctcctctgaggaaacagactgggaggaag
aagcagcccattaccagccagctaattggtcaagaaaaaagccaaaagcg
gctggcgaaagccagtttgctgattggcctcaggcagtcggcttcaagtc
gccctatgcggagtccccgccctgcgtagtgcgtcagcaatgcgcaaaaa
gatgcgcagagagtcagtgcgcagagaaggcagtgcgcaaactcattcat
tcccaagagaggtcaatgaaaaaacaacaagcatttcgctttgaaggagc
gaaggtggggcgtgtcacgctcggtgaatactacaataatgaaattggcg
aagcggtccgaaatacggaaccaatgcaaattaccttgggcatgataaag
gatcgcggcgagtgaccataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62436470_62437619
seq2: B6Ng01-131P13.b_48_1185

seq1  GAATTCCAGGTTTTTGAGCTATAATTTTTAAATTTTATTTTATATGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTTTTGAGCTATAATTTTTAAATTTTATTTTATATGTATT  50

seq1  TTAATTTTATTTTGCATGCATGTGTTTGAGAACAGAAGGCAACAGCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATTTTGCATGCATGTGTTTGAGAACAGAAGGCAACAGCAAAT  100

seq1  AATTCCCAATAATAGTTAACAGCCAGGTAGTTTGGGGAATGGAACCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAATAATAGTTAACAGCCAGGTAGTTTGGGGAATGGAACCTCTG  150

seq1  TCTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGACTGTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGACTGTCTGA  200

seq1  CAAGGTGCTTATTTAAATTGTACTTTTGTACATGTTAAGTAAAAATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCTTATTTAAATTGTACTTTTGTACATGTTAAGTAAAAATATTG  250

seq1  CATTATTTTCTTCTTCATTTTCTATTCTTTATCCATTCCCAAAAGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTCTTCTTCATTTTCTATTCTTTATCCATTCCCAAAAGTGTTC  300

seq1  CAATATCTTCTTTGTTAAGGATGAAAAATAATTCACAAATACATGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTTCTTTGTTAAGGATGAAAAATAATTCACAAATACATGAAGAA  350

seq1  AACCTGCTGTGTGCATTTCCCTTGACTGTGTATTTGATTTTTTCAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTGTGTGCATTTCCCTTGACTGTGTATTTGATTTTTTCAGGGAT  400

seq1  GAATAGTTTGCATTGAATATGCCATGAGGAAGCTAATCCCAGCCTGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTTGCATTGAATATGCCATGAGGAAGCTAATCCCAGCCTGAGGA  450

seq1  TAATTTTTTGACTTATGGGAGAATCTGCTCCTGAAGTGACCTAGGATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTGACTTATGGGAGAATCTGCTCCTGAAGTGACCTAGGATATC  500

seq1  TTGTGCAAAAAACATGAAGAATAGAAAACTTAGAGTGGTAAACATCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAAAAACATGAAGAATAGAAAACTTAGAGTGGTAAACATCTCAG  550

seq1  ATAACACTTATTGGTGTCATGACCCCGAGCTTCTGGAGCTGCAGGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTTATTGGTGTCATGACCCCGAGCTTCTGGAGCTGCAGGGAAGA  600

seq1  CTATGGCTACTGTCCTGAGACAATCACAGTCTGCCTTGGCTCTCTGGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTACTGTCCTGAGACAATCACAGTCTGCCTTGGCTCTCTGGCCC  650

seq1  TTACAACACACCCTGTTGACCACTTTTAACTTGGATGACTGTGAAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACACACCCTGTTGACCACTTTTAACTTGGATGACTGTGAAATCCT  700

seq1  GGTGTCCTCCCTCTGTAAGTACCATAAATATAGGCATGTGCAACCATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTCCCTCTGTAAGTACCATAAATATAGGCATGTGCAACCATGCC  750

seq1  TGGTTTAGGTGGCTTCCACTTCAATTACTAATTCATTAGAATTACAGCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGGTGGCTTCCACTTCAATTACTAATTCATTAGAATTACAGCGT  800

seq1  GTGAAAGATGAATAGTTCCAATAAAGTATATTCAGAAGCAACTTAACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGATGAATAGTTCCAATAAAGTATATTCAGAAGCAACTTAACTCT  850

seq1  GTGACCCTCAGTTTTACCATCTGTAGAATAAACCTAGAAGTCTACCCTTG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTGACCCTCAGTTTTACCATCTGTAGAAT-AACCTAGAAGTCTACCCTTG  899

seq1  AGCCAGGTGGTGATGGTGCATGCCTTTAATCCCAGCACTTGGGAGGAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTGGTGATGGTGCATGCCTTTAATCCCAGCACTTGGGAGGAAGA  949

seq1  GGCAGGCAGATTTCTGAGTTCAAGGACAGCCTGGTCTACAAAGTGAGTTC  1000
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCA-GCAGATTTCTGAGTTCAAGGACAGCCTGGTCTAC-AAGTGAGTTC  997

seq1  CAGGACAGCCAGGGCTGTACAGAGAAATCCTGTCTTGAAAAAAAAAGTCT  1050
      |||||||| || |||||| |||||||  | |||| |||||||||||||||
seq2  CAGGACAGTCA-GGCTGTTCAGAGAATCCTTGTC-TGAAAAAAAAAGTCT  1045

seq1  ACTCTGGTTTTGGTGAATTATAACAGATGCCACCATAAATCAAAATAATA  1100
      ||||||||||||||| ||||| || |||| |||||| |||| ||||||||
seq2  ACTCTGGTTTTGGTG-ATTAT-ACCGATG-CACCAT-AATC-AAATAATA  1090

seq1  TTGTTCTTAGTTGGGAGAGAGGTTTTTAGGTAGGAAATCTACATATGATG  1150
      |||||||||||||||||||| | ||||||||||||| || || |||||||
seq2  TTGTTCTTAGTTGGGAGAGA-GCTTTTAGGTAGGAACTC-ACTTATGATG  1138