BAC Information

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BAC

Clone NameB6Ng01-132J08
Chromosome13 (Build37)
Map Location 6,682,221 - 6,828,189
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132J08.bB6Ng01-132J08.g
ACCDH933350DH933351
length1,1781,078
definitionDH933350|Mus musculus domesticus DNA, BAC clone: B6Ng01-132J08, 5' end.DH933351|Mus musculus domesticus DNA, BAC clone: B6Ng01-132J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,827,006 - 6,828,189)(6,682,221 - 6,683,298)
sequence
gaattcttctgacaaatggagattctccacagatatttaaaagttacact
catacaagaaattaccagggcccaggaaataggggggttgtagtattgca
gtattcatgagaaggtctgctaaagtagaacccctggtggtagacttaac
aattgactggctttatacctggctcccttcttagtggcagcggcctgatc
ccccccttcttttgatgtatacattccttttatatagtgtcactgtaact
tggtggattgtatctcgtctggtttcttgctatactcctatataaaaaat
ttgatgctcgacctgacaaaatacattcagattctaaacaatctcctgtg
tgcatctgtctgtcatttccgctgactcttttgcccacctgcaactagag
accctttccacgctgacaaagggacccagagggtctgcgacaatcctagg
tcataagacctcaaaagataagaattcaactttaaaacaaagcaaaagat
ataatatgctttatacctaaaacacaagaactcagaaaaagtggaagcaa
acatatcagctgtgggaaacttatttctgattcttaaaactttcttacct
ctttcaagttatttttctacttgtagtctctaatttaaaatgaattaagg
ctcagagtatttgaaacaaaaagggatagaacctctaggactagatattg
gctcatcatttttaaacatgttattgtgtcagatagcaatgtgggatttc
cagttaacccacaaatactcagtatactattatcaattaatttcttgatg
acctgtttgaaataagagaagaagggaggaaaataaaggatggagggcag
agggaaaggaagaaaggaagggtaatttgtaaatgcaaagcaaaagtaac
agtgtcaaaaagtgacaacagatctcattactaagttcactttgtctact
tattttagtgactttatggcatcatgatggccatcctgtcacttgacccc
acctagaaaaagaaaccatatttagtgtcacctccatcatactggcctgt
tagcacgtctgtgaagcatgtcatgagtggtattgattgtagtgaggcac
agccaataatgggttgtcctttcctgtgtagtcaaactgtaatgcataaa
ctgtggaaggcttgcagccaaactgcta

gaattctccttggctccaagatccacgctgggccattccaaaccatcagc
ttgtatcccagtgttgtagaatgccactatgtttatcttaggtgttagaa
cctcagggctccaaggttggtcaggagaggaaaactggtggctctggctg
aattcctaattattcagtggaccataggacatctcccttgtccttgagtg
aatatgcatagacctcatcagatcctgtcagattgggtacttggtaacca
gaatccagaaaccaagtagaaaagtgtatagaaagctaaaaggcttctat
aacttaccaaagtgcttgctatctccttttcaagcatggccatccactgc
agggagaagcccagatctttttattaatattacaaagcatgcacccctgg
ggcagcccaccaatcctggactgaataacatggggagggggttgtctttc
ttatctggctgcagggcaccaaatgttaattctgagatttacaaaagaaa
aatcagttccaaaaatttgtgccaagtttaatcaagctctaattcagtac
cgaccagaaaaatagactctggtcaggtctaccgatgggttcccagagag
tggtcataagacttgtgctataggacttttttttgagagttggctctctc
ttttttttaaaaaaattttttattgggtattttcctcatttacatttcca
atgctatcccaaaagtcccccatacctccccccactcccacttcttggcc
ctggcgttcccatatactgaggcatataaagtttgcacgaccaatgggcc
tctctttcaactgatggccagctaggccatctttctgataatatgcagct
agagacacaagctccggggtactggttagttcatatttttgttccaccta
atagggttgcagatccctttagctcttgggtactttctctagctccttca
ttgggggccctgtgatcatccaatagctgactgtgagcatcatttctgtg
tttgctaggcccggcatagtcttacaagaaaacagctatttcaaggtcct
ttcagcaaaatcttggctgggggtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6827006_6828189
seq2: B6Ng01-132J08.b_49_1226 (reverse)

seq1  TAGCAGTTT-GCTGCCAGCCT--CACAGTTAATGCACTACAGTTTTACCT  47
      ||||||||| ||||| |||||  ||||||| ||||| |||||||| | ||
seq2  TAGCAGTTTGGCTGCAAGCCTTCCACAGTTTATGCATTACAGTTTGA-CT  49

seq1  ACACAGGAAAAGGACCACCCATAATTGCCTGTG-CTCACCTAC-ATCAAT  95
      ||||||| ||||||| |||||| |||| ||||| |||| |||| ||||| 
seq2  ACACAGG-AAAGGACAACCCATTATTGGCTGTGCCTCA-CTACAATCAA-  96

seq1  TACCACTCATGACAATGCTTCACAGACGTGCTAACAGGCCAGTATGATGG  145
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACCACTCATGAC-ATGCTTCACAGACGTGCTAACAGGCCAGTATGATGG  145

seq1  AGGTGACACTTAAATATGGTTTCCTTTTTCTAGGT-GTGTCAAGTTGACA  194
      ||||||||| |||||||||||| |||||||||||| | |||||| |||||
seq2  AGGTGACAC-TAAATATGGTTT-CTTTTTCTAGGTGGGGTCAAG-TGACA  192

seq1  AGATTGGCCATCATGATGCCATAAAGTCAACTAAAATAAGTAAGACAAAG  244
       || |||||||||||||||||||||||| |||||||||||| ||||||||
seq2  GGA-TGGCCATCATGATGCCATAAAGTC-ACTAAAATAAGT-AGACAAAG  239

seq1  TGAACTTAGTAATGAGATCTGTTGTCCACTTTTTTGACACTGTTACTTTT  294
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  TGAACTTAGTAATGAGATCTGTTGT-CAC-TTTTTGACACTGTTACTTTT  287

seq1  GCTTTGCATTTACAAATTACCCTTCCTTTCTTCCTTTCCCTCTGCCCTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATTTACAAATTACCCTTCCTTTCTTCCTTTCCCTCTGCCCTCC  337

seq1  ATCC-TTATTTTCCTCCCTTCTTCTCTTATTTCAAACAGGTCATCAAGAA  393
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTATTTTCCTCCCTTCTTCTCTTATTTCAAACAGGTCATCAAGAA  387

seq1  ATTAATTGATAATAGTATACTGAGTATTTGTGGGTTAACTGGAAATCCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGATAATAGTATACTGAGTATTTGTGGGTTAACTGGAAATCCCA  437

seq1  CATTGCTATCTGACACAATAACATGTTTAAAAATGATGAGCCAATATCTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTATCTGACACAATAACATGTTTAAAAATGATGAGCCAATATCTA  487

seq1  GTCCTAGAGGTTCTATCCCTTTTTGTTTCAAATACTCTGAGCCTTAATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAGGTTCTATCCCTTTTTGTTTCAAATACTCTGAGCCTTAATTC  537

seq1  ATTTTAAATTAGAGACTACAAGTAGAAAAATAACTTGAAAGAGGTAAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTAGAGACTACAAGTAGAAAAATAACTTGAAAGAGGTAAGAA  587

seq1  AGTTTTAAGAATCAGAAATAAGTTTCCCACAGCTGATATGTTTGCTTCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAGAATCAGAAATAAGTTTCCCACAGCTGATATGTTTGCTTCCA  637

seq1  CTTTTTCTGAGTTCTTGTGTTTTAGGTATAAAGCATATTATATCTTTTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGAGTTCTTGTGTTTTAGGTATAAAGCATATTATATCTTTTGC  687

seq1  TTTGTTTTAAAGTTGAATTCTTATCTTTTGAGGTCTTATGACCTAGGATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAAAGTTGAATTCTTATCTTTTGAGGTCTTATGACCTAGGATT  737

seq1  GTCGCAGACCCTCTGGGTCCCTTTGTCAGCGTGGAAAGGGTCTCTAGTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGACCCTCTGGGTCCCTTTGTCAGCGTGGAAAGGGTCTCTAGTTG  787

seq1  CAGGTGGGCAAAAGAGTCAGCGGAAATGACAGACAGATGCACACAGGAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGCAAAAGAGTCAGCGGAAATGACAGACAGATGCACACAGGAGA  837

seq1  TTGTTTAGAATCTGAATGTATTTTGTCAGGTCGAGCATCAAATTTTTTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGAATCTGAATGTATTTTGTCAGGTCGAGCATCAAATTTTTTAT  887

seq1  ATAGGAGTATAGCAAGAAACCAGACGAGATACAATCCACCAAGTTACAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTATAGCAAGAAACCAGACGAGATACAATCCACCAAGTTACAGT  937

seq1  GACACTATATAAAAGGAATGTATACATCAAAAGAAGGGGGGGATCAGGCC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATATAAAAGGAATGTATACATCAAAAGAAGGGGGGGATCAGGCC  987

seq1  GCTGCCACTAAGAAGGGAGCCAGGTATAAAGCCAGTCAATTGTTAAGTCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACTAAGAAGGGAGCCAGGTATAAAGCCAGTCAATTGTTAAGTCT  1037

seq1  ACCACCAGGGGTTCTACTTTAGCAGACCTTCTCATGAATACTGCAATACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGGGGTTCTACTTTAGCAGACCTTCTCATGAATACTGCAATACT  1087

seq1  ACAACCCCCCTATTTCCTGGGCCCTGGTAATTTCTTGTATGAGTGTAACT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCCCTATTTCCTGGGCCCTGGTAATTTCTTGTATGAGTGTAACT  1137

seq1  TTTAAATATCTGTGGAGAATCTCCATTTGTCAGAAGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATCTGTGGAGAATCTCCATTTGTCAGAAGAATTC  1178


seq1: chr13_6682221_6683298
seq2: B6Ng01-132J08.g_67_1144

seq1  GAATTCTCCTTGGCTCCAAGATCCACGCTGGGCCATTCCAAACCATCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGGCTCCAAGATCCACGCTGGGCCATTCCAAACCATCAGC  50

seq1  TTGTATCCCAGTGTTGTAGAATGCCACTATGTTTATCTTAGGTGTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCCAGTGTTGTAGAATGCCACTATGTTTATCTTAGGTGTTAGAA  100

seq1  CCTCAGGGCTCCAAGGTTGGTCAGGAGAGGAAAACTGGTGGCTCTGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGCTCCAAGGTTGGTCAGGAGAGGAAAACTGGTGGCTCTGGCTG  150

seq1  AATTCCTAATTATTCAGTGGACCATAGGACATCTCCCTTGTCCTTGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTAATTATTCAGTGGACCATAGGACATCTCCCTTGTCCTTGAGTG  200

seq1  AATATGCATAGACCTCATCAGATCCTGTCAGATTGGGTACTTGGTAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATAGACCTCATCAGATCCTGTCAGATTGGGTACTTGGTAACCA  250

seq1  GAATCCAGAAACCAAGTAGAAAAGTGTATAGAAAGCTAAAAGGCTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGAAACCAAGTAGAAAAGTGTATAGAAAGCTAAAAGGCTTCTAT  300

seq1  AACTTACCAAAGTGCTTGCTATCTCCTTTTCAAGCATGGCCATCCACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACCAAAGTGCTTGCTATCTCCTTTTCAAGCATGGCCATCCACTGC  350

seq1  AGGGAGAAGCCCAGATCTTTTTATTAATATTACAAAGCATGCACCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGCCCAGATCTTTTTATTAATATTACAAAGCATGCACCCCTGG  400

seq1  GGCAGCCCACCAATCCTGGACTGAATAACATGGGGAGGGGGTTGTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCACCAATCCTGGACTGAATAACATGGGGAGGGGGTTGTCTTTC  450

seq1  TTATCTGGCTGCAGGGCACCAAATGTTAATTCTGAGATTTACAAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGCTGCAGGGCACCAAATGTTAATTCTGAGATTTACAAAAGAAA  500

seq1  AATCAGTTCCAAAAATTTGTGCCAAGTTTAATCAAGCTCTAATTCAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTCCAAAAATTTGTGCCAAGTTTAATCAAGCTCTAATTCAGTAC  550

seq1  CGACCAGAAAAATAGACTCTGGTCAGGTCTACCGATGGGTTCCCAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCAGAAAAATAGACTCTGGTCAGGTCTACCGATGGGTTCCCAGAGAG  600

seq1  TGGTCATAAGACTTGTGCTATAGGACTTTTTTTTGAGAGTTGGCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATAAGACTTGTGCTATAGGACTTTTTTTTGAGAGTTGGCTCTCTC  650

seq1  TTTTTTTTAAAAAAATTTTTTATTGGGTATTTTCCTCATTTACATTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAAAAATTTTTTATTGGGTATTTTCCTCATTTACATTTCCA  700

seq1  ATGCTATCCCAAAAGTCCCCCATACCTCCCCCCACTCCCACTTCTTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCAAAAGTCCCCCATACCTCCCCCCACTCCCACTTCTTGGCC  750

seq1  CTGGCGTTCCCATATACTGAGGCATATAAAGTTTGCACGACCAATGGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTTCCCATATACTGAGGCATATAAAGTTTGCACGACCAATGGGCC  800

seq1  TCTCTTTCAACTGATGGCCAGCTAGGCCATC-TTCTGATAAATATGCAGC  849
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  TCTCTTTCAACTGATGGCCAGCTAGGCCATCTTTCTGAT-AATATGCAGC  849

seq1  TAGAGACACAAGCTCCGGGGTACTGGTTAGTTCATATTTTTGTTCCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACAAGCTCCGGGGTACTGGTTAGTTCATATTTTTGTTCCACCT  899

seq1  -ATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTC  948
       |||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  AATAGGGTTGCAGATCCCTTTAGCT-CTTGGGTACTTTCTCTAGCTCCTT  948

seq1  CATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCATTTC  998
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CATTGGGGGCCCTGTGAT-CATCCAATAGCTGACTGTGAGCAT-CATTTC  996

seq1  TGTGTTTGCTAGGCCCCGGCATAGTCTTACAAG-AGACAGCTATATCAGG  1047
      ||||||||||||| ||||||||||||||||||| | |||||||| ||| |
seq2  TGTGTTTGCTAGG-CCCGGCATAGTCTTACAAGAAAACAGCTATTTCAAG  1045

seq1  GTCCTTTCAGCAAAATCTT-GCT-GGTGTATAT  1078
      ||||||||||||||||||| ||| || ||||||
seq2  GTCCTTTCAGCAAAATCTTGGCTGGGGGTATAT  1078


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