BAC Information

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BAC

Clone NameB6Ng01-133J14
Chromosome13 (Build37)
Map Location 21,893,697 - 21,995,378
singlet/doubletdoublet
Overlap geneLOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp
Downstream geneZfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133J14.bB6Ng01-133J14.g
ACCDH934104DH934105
length1,1801,091
definitionDH934104|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J14, 5' end.DH934105|Mus musculus domesticus DNA, BAC clone: B6Ng01-133J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,994,176 - 21,995,378)(21,893,697 - 21,894,799)
sequence
gaattccagaggattaaaggataactcagcagcggtagagctttggcaca
ggattcctgacttgactctccttatttcttctgcttctttttatgtctgt
ggaagatactagctcggaaatctctgaagcctgtggttctacttgagaag
caactgctttatcaagtggttcatgttgaagggttatttactgccttttc
ctaacactgggctgagggatgggtgcagctagaatctgcctgttcctagt
tattactataatgagatcctggacttgaagcacagaggcctctccttcag
cagccgattcagttctctctggggcgagcctgtagttctgcttttcctct
ttttacagaggactgaaccttgtttccagcagtctgtgcttctgtcattg
tatatgtaggagcagaattgttctgttgggagctttctggggtgacctgg
agctggtccaagctagtaaccaggacttactttattaatttaactattgt
caggtcccaaggaaactccaactccccaatcccccaaaggcaggtccaac
tatccagaaatgagcccagcctggactataggaggatttttattccttag
ataaaagccagcatttctcaggaacctgtgaagctgattcccctcctcca
aaagacgtcatcattttcccttacttctggcagaaaggacatatggctgc
tcatggaaccaggctcctgccacacatttcaaactcttcgccagtgtcct
agctcatctcacctctgccctagctataaattccttccagctcatagacc
tttccccccaacccagctgctctttctccttacaactctgctattctcca
tttgctcgctccccagcccccactctcttcccgcttctctcactgtgttt
cctctgtcctccatcccttgctattctccctctctcacagctaaccctgg
ccatatccagcctgcttgctgtgtcagtctgcttctcatctctctgctct
ggactctccagaatgcctctgggctgttcttctcctcttatttacaataa
aaactttacatacctcgagtgtcaaataagcagttattcactatattctt
gtcggtttaaaaaacctgatgtttatgaagaagtagaagtgagacgactt
tgtgtagtgacggataaagagaggcctggc
gaattcccctaatttacaagaaaagctgggccttagagtccattcccaga
atgggagacccctgcattcaggaaagtcagctgaaaaagcactctttgct
ggtgcatactacttgagtagggtactattcttcgtcgattctcaaaccct
gacatgaagagatgaaggcatagtgtaaaatgaaattgggaagaaagcag
aatgactttaaatcaaactcaacagaagctatcctaagctctgggacgat
caaaagcagaaagtttatacacctggggagattttgaactcctactgtga
gtcactcctggaaagactggagctaaaaccaaaacagtcctggccttcct
taggacatgatgtgtggactagagaggcgagtttatgaagcaagaggtgg
actttgaggagctgtgagaaggggaaacacagatggggtacccaagcccc
ctaaagggaagctcgtgcagaaatgagggagaacgtctggaaggtcagag
ttaatatttgaggtgtgaatggagatcttgaggagaacaatgattgaaac
tcgaaaggggaaagacctgttagctttggtctaacctttgacccagtctc
aggaggctgtcgtctacagagttgtcactagagaaataagcaattgtgca
atttgtttagaaaaaaaaaaaaagaataaaaacaaacaaaaagacaaaca
tcgccccaaacaaaaccaaaaggactccaaacaactcgtgttttaaggat
gtctatggttttgtgctgtggctcgttcactgtgactttcagctgcagag
gctttctctaaccggaaccagagccacagcccaagaaaccagcagctgtg
actggacacagtggcctgagcaagagtggctgaaccgctgggctccttgc
tgtgtggagactgggagaagagcacaagtttattgccttcaccgttaggt
actctcacttctcagtacaaacgttctttctgataggggaaaaaataggc
atttattagagcgcaccccacggtgtattctttcagcaataagaagatgc
tgaaacgtactttctcactcacacagatgtgggtcagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21994176_21995378
seq2: B6Ng01-133J14.b_48_1227 (reverse)

seq1  GCCATGGCCTCTCTTCTTATCTGTCCACCTACCACAGAGTCTGTCTCACT  50
      |||| |||||||||  ||||| |||   ||| |||| |||| ||||||||
seq2  GCCA-GGCCTCTCT--TTATCCGTC--ACTA-CACAAAGTC-GTCTCACT  43

seq1  CCTACTCTCTCATAGAAACATCATGTTTTTTTAAAAAACGGACAAAGAAT  100
       |||||   ||||  |||||||| |||||||    |||| ||| ||||||
seq2  TCTACTTCTTCAT--AAACATCAGGTTTTTT----AAACCGAC-AAGAAT  86

seq1  ATAGTTGAATAAACTGCTTATATGACCACTCCGAGGTATGGTTAAAGGTT  150
      |||| ||||| |||||||||| ||| |||| |||||||||  |||| |||
seq2  ATAG-TGAAT-AACTGCTTATTTGA-CACT-CGAGGTATG--TAAA-GTT  129

seq1  TTTATTGTAGATAAGAGAGAAAGAACAGCCCAGAGGCA-TCTGGAAGAGT  199
      ||||||||| |||||||   |||||||||||||||||| ||||| |||||
seq2  TTTATTGTAAATAAGAGGAGAAGAACAGCCCAGAGGCATTCTGG-AGAGT  178

seq1  CCAGAGCAGAGAGATGAAGAAGCAGACTGAACACAGCCAGCAGGCTGGAT  249
      |||||||||||||||| |||||||||||| ||||||| ||||||||||||
seq2  CCAGAGCAGAGAGATG-AGAAGCAGACTG-ACACAGCAAGCAGGCTGGAT  226

seq1  ATGGCCAGGGTTAGCTGTGAGAGAGGGAGAATAGCAAGGGATGGAGGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGGGTTAGCTGTGAGAGAGGGAGAATAGCAAGGGATGGAGGACA  276

seq1  GAGGAAACACAGTGAGAGAAGCGGGAAGAGAGTGGGGGCTGGGGAGCGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACACAGTGAGAGAAGCGGGAAGAGAGTGGGGGCTGGGGAGCGAG  326

seq1  CAAATGGAGAATAGCAGAGTTGTAAGGAGAAAGAGCAGCTGGGTTGGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAGAATAGCAGAGTTGTAAGGAGAAAGAGCAGCTGGGTTGGGGG  376

seq1  GAAAGGTCTATGAGCTGGAAGGAATTTATAGCTAGGGCAGAGGTGAGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCTATGAGCTGGAAGGAATTTATAGCTAGGGCAGAGGTGAGATG  426

seq1  AGCTAGGACACTGGCGAAGAGTTTGAAATGTGTGGCAGGAGCCTGGTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGACACTGGCGAAGAGTTTGAAATGTGTGGCAGGAGCCTGGTTCC  476

seq1  ATGAGCAGCCATATGTCCTTTCTGCCAGAAGTAAGGGAAAATGATGACGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGCCATATGTCCTTTCTGCCAGAAGTAAGGGAAAATGATGACGT  526

seq1  CTTTTGGAGGAGGGGAATCAGCTTCACAGGTTCCTGAGAAATGCTGGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAGGAGGGGAATCAGCTTCACAGGTTCCTGAGAAATGCTGGCTT  576

seq1  TTATCTAAGGAATAAAAATCCTCCTATAGTCCAGGCTGGGCTCATTTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAGGAATAAAAATCCTCCTATAGTCCAGGCTGGGCTCATTTCTG  626

seq1  GATAGTTGGACCTGCCTTTGGGGGATTGGGGAGTTGGAGTTTCCTTGGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTGGACCTGCCTTTGGGGGATTGGGGAGTTGGAGTTTCCTTGGGA  676

seq1  CCTGACAATAGTTAAATTAATAAAGTAAGTCCTGGTTACTAGCTTGGACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAATAGTTAAATTAATAAAGTAAGTCCTGGTTACTAGCTTGGACC  726

seq1  AGCTCCAGGTCACCCCAGAAAGCTCCCAACAGAACAATTCTGCTCCTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGTCACCCCAGAAAGCTCCCAACAGAACAATTCTGCTCCTACA  776

seq1  TATACAATGACAGAAGCACAGACTGCTGGAAACAAGGTTCAGTCCTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATGACAGAAGCACAGACTGCTGGAAACAAGGTTCAGTCCTCTGT  826

seq1  AAAAAGAGGAAAAGCAGAACTACAGGCTCGCCCCAGAGAGAACTGAATCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGAAAAGCAGAACTACAGGCTCGCCCCAGAGAGAACTGAATCG  876

seq1  GCTGCTGAAGGAGAGGCCTCTGTGCTTCAAGTCCAGGATCTCATTATAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAAGGAGAGGCCTCTGTGCTTCAAGTCCAGGATCTCATTATAGT  926

seq1  AATAACTAGGAACAGGCAGATTCTAGCTGCACCCATCCCTCAGCCCAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTAGGAACAGGCAGATTCTAGCTGCACCCATCCCTCAGCCCAGTG  976

seq1  TTAGGAAAAGGCAGTAAATAACCCTTCAACATGAACCACTTGATAAAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAAGGCAGTAAATAACCCTTCAACATGAACCACTTGATAAAGCA  1026

seq1  GTTGCTTCTCAAGTAGAACCACAGGCTTCAGAGATTTCCGAGCTAGTATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTCAAGTAGAACCACAGGCTTCAGAGATTTCCGAGCTAGTATC  1076

seq1  TTCCACAGACATAAAAAGAAGCAGAAGAAATAAGGAGAGTCAAGTCAGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGACATAAAAAGAAGCAGAAGAAATAAGGAGAGTCAAGTCAGGA  1126

seq1  ATCCTGTGCCAAAGCTCTACCGCTGCTGAGTTATCCTTTAATCCTCTGGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGCCAAAGCTCTACCGCTGCTGAGTTATCCTTTAATCCTCTGGA  1176

seq1  ATTC  1203
      ||||
seq2  ATTC  1180

seq1: chr13_21893697_21894799
seq2: B6Ng01-133J14.g_67_1157

seq1  GAATTCCCCTAATTTACAAGAAAAGCTGGGCCTTAGAGTCCATTCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTAATTTACAAGAAAAGCTGGGCCTTAGAGTCCATTCCCAGA  50

seq1  ATGGGAGACCCCTGCATTCAGGAAAGTCAGCTGAAAAAGCACTCTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGACCCCTGCATTCAGGAAAGTCAGCTGAAAAAGCACTCTTTGCT  100

seq1  GGTGCATACTACTTGAGTAGGGTACTATTCTTCGTCGATTCTCAAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATACTACTTGAGTAGGGTACTATTCTTCGTCGATTCTCAAACCCT  150

seq1  GACATGAAGAGATGAAGGCATAGTGTAAAATGAAATTGGGAAGAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAGAGATGAAGGCATAGTGTAAAATGAAATTGGGAAGAAAGCAG  200

seq1  AATGACTTTAAATCAAACTCAACAGAAGCTATCCTAAGCTCTGGGACGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTAAATCAAACTCAACAGAAGCTATCCTAAGCTCTGGGACGAT  250

seq1  CAAAAGCAGAAAGTTTATACACCTGGGGAGATTTTGAACTCCTACTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGAAAGTTTATACACCTGGGGAGATTTTGAACTCCTACTGTGA  300

seq1  GTCACTCCTGGAAAGACTGGAGCTAAAACCAAAACAGTCCTGGCCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCTGGAAAGACTGGAGCTAAAACCAAAACAGTCCTGGCCTTCCT  350

seq1  TAGGACATGATGTGTGGACTAGAGAGGCGAGTTTATGAAGCAAGAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATGATGTGTGGACTAGAGAGGCGAGTTTATGAAGCAAGAGGTGG  400

seq1  ACTTTGAGGAGCTGTGAGAAGGGGAAACACAGATGGGGTACCCAAGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGGAGCTGTGAGAAGGGGAAACACAGATGGGGTACCCAAGCCCC  450

seq1  CTAAAGGGAAGCTCGTGCAGAAATGAGGGAGAACGTCTGGAAGGTCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGAAGCTCGTGCAGAAATGAGGGAGAACGTCTGGAAGGTCAGAG  500

seq1  TTAATATTTGAGGTGTGAATGGAGATCTTGAGGAGAACAATGATTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTGAGGTGTGAATGGAGATCTTGAGGAGAACAATGATTGAAAC  550

seq1  TCGAAAGGGGAAAGACCTGTTAGCTTTGGTCTAACCTTTGACCCAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGGGGAAAGACCTGTTAGCTTTGGTCTAACCTTTGACCCAGTCTC  600

seq1  AGGAGGCTGTCGTCTACAGAGTTGTCACTAGAGAAATAAGCAATTGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTGTCGTCTACAGAGTTGTCACTAGAGAAATAAGCAATTGTGCA  650

seq1  ATTTGTTTAGAAAAAAAAAAAAAGAATAAAAACAAACAAAAAGACAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAGAAAAAAAAAAAAAGAATAAAAACAAACAAAAAGACAAACA  700

seq1  TCGCCCCAAACAAAACCAAAAGGACTCCAAACAACTCGTGTTTTAAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCCCAAACAAAACCAAAAGGACTCCAAACAACTCGTGTTTTAAGGAT  750

seq1  GTCTATGGTTTTGTGCTGTGGCTCGTTCACTGTGACTTTCAGCTGCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGTTTTGTGCTGTGGCTCGTTCACTGTGACTTTCAGCTGCAGAG  800

seq1  GCTTTCCCTAACCGGAACCAGAGCCACAGCCCAAGAAACCAGCAGCTGTG  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTAACCGGAACCAGAGCCACAGCCCAAGAAACCAGCAGCTGTG  850

seq1  ACTGGACACAGTGGCCTGAGCAAGAGTGGCTGAACCGCTGGGCTCCTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACACAGTGGCCTGAGCAAGAGTGGCTGAACCGCTGGGCTCCTTGC  900

seq1  TGTGTGGAGACTGGGAGAAGAGCACAAGTTTATTGCCTTCA-CGTTAGGT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGTGGAGACTGGGAGAAGAGCACAAGTTTATTGCCTTCACCGTTAGGT  950

seq1  ACTTCTCACTTCTCAGGTACAAACGTTCTTTCTGATAGGGGAAAAAAATA  999
      || |||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AC-TCTCACTTCTCA-GTACAAACGTTCTTTCTGATAGGGG-AAAAAATA  997

seq1  GGCATTTATTTAGAGCGCA-CACACGTGTGTATTCTTTTCCGGGAATAAG  1048
      |||||||| |||||||||| | |||| |||||||||||  | | ||||||
seq2  GGCATTTA-TTAGAGCGCACCCCACG-GTGTATTCTTT--CAGCAATAAG  1043

seq1  AAGATGCCTGAAACGTAACCTTTCTCACTCACACCAGAATGTGGGTTCCA  1098
      |||||| ||||||||||  |||||||||||||| ||| ||||||||  ||
seq2  AAGATG-CTGAAACGTA--CTTTCTCACTCACA-CAG-ATGTGGGT--CA  1086

seq1  GAAAT  1103
      |||||
seq2  GAAAT  1091