BAC Information

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BAC

Clone NameB6Ng01-133N06
Chromosome13 (Build37)
Map Location 45,920,713 - 46,039,348
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133N06.bB6Ng01-133N06.g
ACCDH934278DH934279
length1,190616
definitionDH934278|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N06, 5' end.DH934279|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,920,713 - 45,921,883)(46,038,735 - 46,039,348)
sequence
gaattccagaagattaagacaggagatctctgagttcaaggtcatctagg
attaaaggtgtggtggcaacacctttaatctgggccacatcttctgctgg
agacctacataaggacattggaagaaggaagattgactctctcccttctt
tgcctgcttgccttgtgggactgagcaactgctccatccttggacttcca
ttcacagctgctgctgaccgttgttgggggttggactacagactgtaagt
catcaacaaattcccttactatatggagactacccataagttctgtgact
ctagagaaccctgacgaatacacacacacacacacacacacacacacaca
cacacacacagagagagagagagagagacagacagacagacagacacaca
gagagaggcacacaccatgcaccaaacatacacattaaacagtttaaata
aagaaagaaataaacgtgtatatttttggagactacagaaaagaaactaa
aattactaaaaacaaaaacaaaaataaaaaaacaatttacttttagggat
ttataggttatctcctaatgaagctattaccaaaaatacactagctaaga
aaaacaagccagtatgaaatgacaatactatttgatttgcattgattttt
taaacatttatttacagttatttcttgtgtatgtgtccatgcacagatgt
ttaggtcaaaggccagtttgcaggagtgggctctctccttccaccaggtg
gattccagttgtcatcctgagatcaagcacctttatgctcagccatgtct
cggccatttgattggctcctttaaggggttaatatcacagagcagaaagt
taagttagtagtagccagggatgggagcagggtgcagaagaattgttatc
taaaaatatagtttgatttagcacaattaaaattggtcctgtcttacttt
cttttcctgtcaatttgaataaaacacacggaccatatgccaatatgggg
agaagaagcttaatccctgttcataattccagggtacaaatctaatcaca
gtaggggatttcctgaacagcaaaagctgtaggtaggctgggtcattatg
attccacagataggaagcgaagagcgataaaaggcttggaactctacctt
attgtcctatttgtgagacatttcaagtttctagcttagg
gaattctcttcctatctctcaggcctcagatccagtttatccccgaagcc
ttctgggttgctgaacccaggcatagagaagcatactggcatattcaatc
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcatgcacgcgcataggt
gtggacctggaaagaaatccttcctgctctcactgtatctttggtgcctg
actgaagtctttttagaaaccaggcagtgatacatacctataatcctagc
atgcggcaggctgaagcaggaggattgctggagttctaggccagcctaga
ctccagagtgatacagaagtttgaggaattcgactcagttttgtccatcc
tatgttcccagcctcataagacaagcctgtaactattgtgtagacagaaa
gcaaagaggatcccattattaacttagacatcagccaggcacagcggtac
atgctcacagttctaggactctgcaatgtgatagggggtgattgtgaggt
ttgaggccagccctggctacataggacagccctgtctcagaaacaaaaca
ccaaaccaaaaaactatttcgaaaaatgtttgactcttcaagaatagggt
gtgggggggggaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45920713_45921883
seq2: B6Ng01-133N06.b_46_1235

seq1  GAATTCCAGAAGATTAAGACAGGAGATCTCTGAGTTCAAGGTCATCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAGACAGGAGATCTCTGAGTTCAAGGTCATCTAGG  50

seq1  ATTAAAGGTGTGGTGGCAACACCTTTAATCTGGGCCACATCTTCTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGGTGGCAACACCTTTAATCTGGGCCACATCTTCTGCTGG  100

seq1  AGACCTACATAAGGACATTGGAAGAAGGAAGATTGACTCTCTCCCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTACATAAGGACATTGGAAGAAGGAAGATTGACTCTCTCCCTTCTT  150

seq1  TGCCTGCTTGCCTTGTGGGACTGAGCAACTGCTCCATCCTTGGACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTGCCTTGTGGGACTGAGCAACTGCTCCATCCTTGGACTTCCA  200

seq1  TTCACAGCTGCTGCTGACCGTTGTTGGGGGTTGGACTACAGACTGTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTGCTGCTGACCGTTGTTGGGGGTTGGACTACAGACTGTAAGT  250

seq1  CATCAACAAATTCCCTTACTATATGGAGACTACCCATAAGTTCTGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACAAATTCCCTTACTATATGGAGACTACCCATAAGTTCTGTGACT  300

seq1  CTAGAGAACCCTGACGAATACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAACCCTGACGAATACACACACACACACACACACACACACACACA  350

seq1  CACACACACAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACACACA  400

seq1  GAGAGAGGCACACACCATGCACCAAACATACACATTAAACAGTTTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGCACACACCATGCACCAAACATACACATTAAACAGTTTAAATA  450

seq1  AAGAAAGAAATAAACGTGTATATTTTTGGAGACTACAGAAAAGAAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAATAAACGTGTATATTTTTGGAGACTACAGAAAAGAAACTAA  500

seq1  AATTACTAAAAACAAAAACAAAAATAAAAAAACAATTTACTTTTAGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTAAAAACAAAAACAAAAATAAAAAAACAATTTACTTTTAGGGAT  550

seq1  TTATAGGTTATCTCCTAATGAAGCTATTACCAAAAATACACTAGCTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTTATCTCCTAATGAAGCTATTACCAAAAATACACTAGCTAAGA  600

seq1  AAAACAAGCCAGTATGAAATGACAATACTATTTGATTTGCATTGATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGCCAGTATGAAATGACAATACTATTTGATTTGCATTGATTTTT  650

seq1  TAAACATTTATTTACAGTTATTTCTTGTGTATGTGTCCATGCACAGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTATTTACAGTTATTTCTTGTGTATGTGTCCATGCACAGATGT  700

seq1  TTAGGTCAAAGGCCAGTTTGCAGGAGTGGGCTCTCTCCTTCCACCAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCAAAGGCCAGTTTGCAGGAGTGGGCTCTCTCCTTCCACCAGGTG  750

seq1  GATTCCAGTTGTCATCCTGAGATCAAGCACCTTTATGCTCAGCCATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGTTGTCATCCTGAGATCAAGCACCTTTATGCTCAGCCATGTCT  800

seq1  CAGGCCATTTGATTGGCTCCTTTAAGGGGTTAATATCACAGAGCAGAAAG  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-GGCCATTTGATTGGCTCCTTTAAGGGGTTAATATCACAGAGCAGAAAG  849

seq1  TTAAG-TAGTAGTAGCCAGGGAT-GGAGCAGGGTGCAGAAGAATTGTTAT  898
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAAGTTAGTAGTAGCCAGGGATGGGAGCAGGGTGCAGAAGAATTGTTAT  899

seq1  CT-AAAATATAGTTTGATTTAGCACAATTAAAATGGTTCTTGTCTTACTT  947
      || ||||||||||||||||||||||||||||||| | || ||||||||||
seq2  CTAAAAATATAGTTTGATTTAGCACAATTAAAATTGGTCCTGTCTTACTT  949

seq1  TCTTTTCCTGTCAATTTG-ATAAAACACACTGA-CATATGCAACTTATGG  995
      |||||||||||||||||| ||||||||||| || ||||||| |  |||||
seq2  TCTTTTCCTGTCAATTTGAATAAAACACACGGACCATATGCCA-ATATGG  998

seq1  GAGAGAAG--GCTTA--TCCTGGTCATAGTT-CAAGGTAC-AATCT-ATC  1038
      | ||||||  |||||   |||| ||||| || || ||||| ||||| |||
seq2  G-GAGAAGAAGCTTAATCCCTGTTCATAATTCCAGGGTACAAATCTAATC  1047

seq1  ACAGTAGGGGA-TTCCTG-ACAGCAAAAGCTTGAAGTA-GCT-GGTCA-T  1083
      ||||||||||| |||||| ||||||||||||  | ||| ||| ||||| |
seq2  ACAGTAGGGGATTTCCTGAACAGCAAAAGCTGTAGGTAGGCTGGGTCATT  1097

seq1  ATAGATCCACAGTAAGGAAGCAGAGAGCGAT-AAATGCTT-GAACTC-AA  1130
      ||   |||||||  |||||||  |||||||| ||| |||| |||||| | 
seq2  ATGATTCCACAGATAGGAAGCGAAGAGCGATAAAAGGCTTGGAACTCTAC  1147

seq1  CTTATTGTCCTATTTGT-AGACA-TTCAAGTTCCTAGCCTAGG  1171
      ||||||||||||||||| ||||| |||||||| ||||| ||||
seq2  CTTATTGTCCTATTTGTGAGACATTTCAAGTTTCTAGCTTAGG  1190

seq1: chr13_46038735_46039348
seq2: B6Ng01-133N06.g_67_682 (reverse)

seq1  TACCT--CCCCCCCACACCCTATTCTTGAAGAGTCAAACATTTTTCGAAA  48
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCCCCCCCACACCCTATTCTTGAAGAGTCAAACATTTTTCGAAA  50

seq1  TAGTTTTTTGGTTTGGTGTTTTGTTTCTGAGACAGGGCTGTCCTATGTAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTGGTTTGGTGTTTTGTTTCTGAGACAGGGCTGTCCTATGTAG  100

seq1  CCAGGGCTGGCCTCAAACCTCACAATCACCCCCTATCACATTGCAGAGTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTGGCCTCAAACCTCACAATCACCCCCTATCACATTGCAGAGTC  150

seq1  CTAGAACTGTGAGCATGTACCGCTGTGCCTGGCTGATGTCTAAGTTAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTGTGAGCATGTACCGCTGTGCCTGGCTGATGTCTAAGTTAATA  200

seq1  ATGGGATCCTCTTTGCTTTCTGTCTACACAATAGTTACAGGCTTGTCTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCCTCTTTGCTTTCTGTCTACACAATAGTTACAGGCTTGTCTTA  250

seq1  TGAGGCTGGGAACATAGGATGGACAAAACTGAGTCGAATTCCTCAAACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGGAACATAGGATGGACAAAACTGAGTCGAATTCCTCAAACTT  300

seq1  CTGTATCACTCTGGAGTCTAGGCTGGCCTAGAACTCCAGCAATCCTCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCACTCTGGAGTCTAGGCTGGCCTAGAACTCCAGCAATCCTCCTG  350

seq1  CTTCAGCCTGCCGCATGCTAGGATTATAGGTATGTATCACTGCCTGGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTGCCGCATGCTAGGATTATAGGTATGTATCACTGCCTGGTTT  400

seq1  CTAAAAAGACTTCAGTCAGGCACCAAAGATACAGTGAGAGCAGGAAGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGACTTCAGTCAGGCACCAAAGATACAGTGAGAGCAGGAAGGAT  450

seq1  TTCTTTCCAGGTCCACACCTATGCGCGTGCATGCGCGCACACACACACAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCAGGTCCACACCTATGCGCGTGCATGCGCGCACACACACACAC  500

seq1  ACACACACACACACAGGATTGAATATGCCAGTATGCTTCTCTATGCCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACAGGATTGAATATGCCAGTATGCTTCTCTATGCCTGG  550

seq1  GTTCAGCAACCCAGAAGGCTTCGGGGATAAACTGGATCTGAGGCCTGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCAACCCAGAAGGCTTCGGGGATAAACTGGATCTGAGGCCTGAGA  600

seq1  GATAGGAAGAGAATTC  614
      ||||||||||||||||
seq2  GATAGGAAGAGAATTC  616