BAC Information

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BAC

Clone NameB6Ng01-134B06
Chromosome13 (Build37)
Map Location 66,797,769 - 66,799,002
singlet/doubletsinglet
Overlap geneVmn2r-ps106
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d
Downstream geneLOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134B06.bB6Ng01-134B06.g
ACCDH934465DH934466
length1,209875
definitionDH934465|Mus musculus domesticus DNA, BAC clone: B6Ng01-134B06, 5' end.DH934466|Mus musculus domesticus DNA, BAC clone: B6Ng01-134B06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggacagccagggctacataaagaaaccctgtctggaaaaacc
aaaaataaataaataaacaaataaatccatatatcaaccagtaacccaag
gtataaaactcccacccaaacagctcaaaccaagaaaccaaatcacctca
aacccagaggcctagacaccagcaaatgaatataatgaataatagccagg
aaaatatatcaccatcaaatccaagctatcctatcacagcaggtcctgag
aaattgaaacatgcaatagatacagtggaaaaatggttgtttgcggtaac
ggagaggagtgaaaacatgggggaagggatagctgtgcacaggaagacct
gcagacaggcacacagacagagagcagagagagacagccacaagaatagg
gaaatagaatgggggttgggggagagcatgtgcagagaacagagacaggg
aacaaagtacagagctgctctagctggtggtccatgtatataaagcacac
ctgacaacagcagcaggtgatggagacaggtaacgacttaagcatttgct
aagtccctaagagcaggccattgaatttgctgtacactgtcaaccacgga
ggcaaggtacacccttggtccaggaagggaagagagactctcaggcatta
gagatgaatagaaaaaaatgataaaatggtcaaaaaatatgaattccaaa
tgttctggcactaaataatcacaatttctgcaacatatgagaaggtgaaa
agtagaaattattggaatagaagaagaatatcagctcaaaggtctagaaa
atattttcagtgaaattatgaatgaaaaattttctaaactaaagaaaata
cctatcaaagtacaagaagcatcaaaaatagcaaatagattggaccaaaa
aagtccttttgccacataacagtcaaaactctaacatataaagcaaagaa
atatgaaaactgcaacagaaagaaataaaaaactaaataaacaaaaacaa
gtaacttatggaagcagactatagcttctatctgtcttctcaatgtctac
tagtaaaacaacagtgtttggatgttttggctgcatgttgaaagaaacta
cccatgttctacagaaagcaactgggccaattttgacgattcgatcagct
atgaatatgaggttatccaagtcatgctgagacctcaaggggtccatctg
ggtgatgct
gaattctaaaaagtctctactttcttcctttatttctgtcttaacatttc
tttcattcattagtgaggtgtgtagcctccatgagtttgtaagctttgtg
ttctctttgtttttttgatatccagttgttatccatggtggtctgataag
atacagttgttctttcagttttattgtatgtatagagaattgcaatgtgt
ctgaatatgtggtcagtttataagtaagtttcatgaggtgctgagcagaa
ggtgtattctcttatatttcagttgaacgttctctaaataccagctggat
tcatgttcatgttgtcagttaactggactaattctttgtttaggtttggt
ctgaagaatttgtcaattggtgggagtggggtattaaaatatctgagtat
aaatgtatgacactcattatgtgattttagctttaaaactgtttctttta
caaaggttggtgaccatatgtttaaggcatagatgttaaaaatttaaatg
tcatctttggtgtttttttttttttctccctttgaggaatctatagtgtc
tttctccaattcttttgattactttttggttaaaatctgttttgctgtat
ttgtaaatggctgtaccagtttgcttctttggtccattttcttggaatgt
ctttttaccaccctttaccttgaagtaatgcctattcttgatgttgagct
atattatttgaatacaataggagagattacgtttagcacccattctgttc
acctgtgtcgttttattggcaaactgaggtcattgatattaatatcaaag
agcagtgatggctaactcctggcatgttgatattgtttcttgctgctggt
ggtcatgttgaggtttgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66797769_66799002
seq2: B6Ng01-134B06.b_46_1254

seq1  GAATTCCAGGACAGCCAGGGCTACATAAAGAAACCCTGTCTGGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACATAAAGAAACCCTGTCTGGAAAAACC  50

seq1  AAAAATAAATAAATAAACAAATAAATCCATATATCAACCAGTAACCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAACAAATAAATCCATATATCAACCAGTAACCCAAG  100

seq1  GTATAAAACTCCCACCCAAACAGCTCAAACCAAGAAACCAAATCACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACTCCCACCCAAACAGCTCAAACCAAGAAACCAAATCACCTCA  150

seq1  AACCCAGAGGCCTAGACACCAGCAAATGAATATAATGAATAATAGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGAGGCCTAGACACCAGCAAATGAATATAATGAATAATAGCCAGG  200

seq1  AAAATATATCACCATCAAATCCAAGCTATCCTATCACAGCAGGTCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATCACCATCAAATCCAAGCTATCCTATCACAGCAGGTCCTGAG  250

seq1  AAATTGAAACATGCAATAGATACAGTGGAAAAATGGTTGTTTGCGGTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAACATGCAATAGATACAGTGGAAAAATGGTTGTTTGCGGTAAC  300

seq1  GGAGAGGAGTGAAAACATGGGGGAAGGGATAGCTGTGCACAGGAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGTGAAAACATGGGGGAAGGGATAGCTGTGCACAGGAAGACCT  350

seq1  GCAGACAGGCACACAGACAGAGAGCAGAGAGAGACAGCCACAAGAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGGCACACAGACAGAGAGCAGAGAGAGACAGCCACAAGAATAGG  400

seq1  GAAATAGAATGGGGGTTGGGGGAGAGCATGTGCAGAGAACAGAGACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAATGGGGGTTGGGGGAGAGCATGTGCAGAGAACAGAGACAGGG  450

seq1  AACAAAGTACAGAGCTGCTCTAGCTGGTGGTCCATGTATATAAAGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTACAGAGCTGCTCTAGCTGGTGGTCCATGTATATAAAGCACAC  500

seq1  CTGACAACAGCAGCAGGTGATGGAGACAGGTAACGACTTAAGCATTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAACAGCAGCAGGTGATGGAGACAGGTAACGACTTAAGCATTTGCT  550

seq1  AAGTCCCTAAGAGCAGGCCATTGAATTTGCTGTACACTGTCAACCACGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTAAGAGCAGGCCATTGAATTTGCTGTACACTGTCAACCACGGA  600

seq1  GGCAAGGTACACCCTTGGTCCAGGAAGGGAAGAGAGACTCTCAGGCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTACACCCTTGGTCCAGGAAGGGAAGAGAGACTCTCAGGCATTA  650

seq1  GAGATGAATAGAAAAAAATGATAAAATGGTCAAAAAATATGAATTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAATAGAAAAAAATGATAAAATGGTCAAAAAATATGAATTCCAAA  700

seq1  TGTTCTGGCACTAAATAATCACAATTTCTGCAACATATGAGAAGGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCACTAAATAATCACAATTTCTGCAACATATGAGAAGGTGAAA  750

seq1  AGTAGAAATTATTGGAATAGAAGAAGAATATCAGCTCAAAGGTCTAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATTATTGGAATAGAAGAAGAATATCAGCTCAAAGGTCTAGAAA  800

seq1  ATATTTTCAGTGAAATTATGAATGAAAAATTTTCTAAACTAAAGAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAGTGAAATTATGAATGAAAAATTTTCTAAACTAAAGAAAATA  850

seq1  CCTATCAAAGTACAAGAAGCATCAAAAATAGCAAATAGATTGGACCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAAGTACAAGAAGCATCAAAAATAGCAAATAGATTGGACCAAAA  900

seq1  AAGTCCTTTTGCCACATAACAGTCAAAACTCTAAACATATAAAGCAAAGA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTCCTTTTGCCACATAACAGTCAAAACTCT-AACATATAAAGCAAAGA  949

seq1  AATATGAAAAACTGCAACAGAAAGAAATAAAAAACTAAATAAAACAAAAA  1000
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  AATATG-AAAACTGCAACAGAAAGAAATAAAAAACTAAAT-AAACAAAAA  997

seq1  CAAGTAACTTATGGAAGCAGACCTATTAGCTTCATATCTGTCTTCTCAAT  1050
      ||||||||||||||||||||| ||| ||||||| ||||||||||||||||
seq2  CAAGTAACTTATGGAAGCAGA-CTA-TAGCTTC-TATCTGTCTTCTCAAT  1044

seq1  GTCTACTAGTAAAAACAACAGTGTTTGGATTGTTTTGTGCTGCATGGTGA  1100
      |||||||||| |||||||||||||||||| ||||||| |||||||| |||
seq2  GTCTACTAGT-AAAACAACAGTGTTTGGA-TGTTTTG-GCTGCATGTTGA  1091

seq1  AAGAAACTACCCATGTTTCTACAAGAAAGCAACTGGCGCAAATGTTTTGG  1150
      ||||||||||||||| |||||| |||||||||||||  |||    ||| |
seq2  AAGAAACTACCCATG-TTCTAC-AGAAAGCAACTGGGCCAA----TTTTG  1135

seq1  ACAGATTCAGAATCAGCTATGATAATGAAGTTATTCAGAGGTCACTGCTT  1200
      || |||||   |||||||||||  |||| ||||| |  | |||| ||| |
seq2  AC-GATTC--GATCAGCTATGAATATGAGGTTATCC--AAGTCA-TGC-T  1178

seq1  GAGACCTCACAGGTGGTCCCATCTGGGTGATGCT  1234
      ||||||||| ||| ||| ||||||||||||||||
seq2  GAGACCTCA-AGG-GGT-CCATCTGGGTGATGCT  1209