BAC Information

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BAC

Clone NameB6Ng01-134C02
Chromosome13 (Build37)
Map Location 21,097,942 - 21,239,501
singlet/doubletdoublet
Overlap geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386
Downstream geneTrim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134C02.bB6Ng01-134C02.g
ACCDH934504DH934505
length1,2111,229
definitionDH934504|Mus musculus domesticus DNA, BAC clone: B6Ng01-134C02, 5' end.DH934505|Mus musculus domesticus DNA, BAC clone: B6Ng01-134C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,097,942 - 21,099,146)(21,238,244 - 21,239,501)
sequence
gaattcttggtataaacaaatgcaccaccaagtgatctttgatcattacc
atccttgaatgtgatcaaagatattaaaaatctaataacgtctaacatcc
atgtgggacacttttttattgtccagagttatttctacaactgtcattta
ttatctttggtgctgcaggcaatttgctgggtatctctaacctctctggt
tccaaacctccaaaaggggattcctttttaaatgtttttattagcgtata
ttaattatacataataattgtttcattatgacatttcaaacacgcacgtg
atatatttcagtcatattcacctcgtgatactgtctcttgtccttctccc
acacacaattaatactcttccattttcctgctagccccaccccctttact
ttcatggctctgtgtctgagtggggtgcaatgatttcactagggttattt
acagatatatggatgggaaccaggagggaaaagaagagtgcaggaggaag
aaggagaagccagcacgggttaggagtcaacagaatgtgaccttgagggc
tgcctaactagagttaagagcagtccagatgaaacatagtaagtaataac
tcgggttatagaaaggaaagtatattctaacaacatagagggtaggatct
gcccagctcttatgttgtttaaggcttattgccgggaggtggtgacacat
gcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttc
gaggccagcctggtctacaaagtgagttccaggacatccaaagctataca
gagaaaccctgtctcgaaaaacaaaaacaaaacaaacaaacaaacaaaca
aaaggcttattgtaaatataaaagttgtgtgtgtgtccttcatctggaac
ttaaatagctaaagcggtgtagaaacctcgggccgagatctaatacattt
tattacaatgatggacatagtaaggagagagtggtagcagaggaatgatg
ttatggaaccttttctgcatgaacacctcacacaacattcaatgaccatg
tcctgttcatggtgtccttctgaaagggaaagaactttaataaccctttc
aggaactattataaatatcttgtcttggggttttaaaccttgaaatccta
gcaatgtattcagaatgtaggagagatagcttattcgatacaacctcttc
agagtagtgtc
gaattccacctttaaaaaaaaccaaacaacaacaacaacaacaacaacaa
caacaacaacaaaaaccaaacaaccaaaaaccaaaacccaaaaccagtga
attaccagacagggagtcaaagaagaaaagatcatcccacccccattttt
cttaaccatttggattttaatttattttttatttttaaagactttattta
ttttatatagctctatatgggaatagagaagacctccatctttaaaaaac
catttggattctttctttttaaaaagacttttattatttatttaatacat
atgagtgctctattcacatatatacctgtgtgccagaagagggcattaga
tccctcttatagatagttgtgacaccatgtggttactgggaattgaaagc
agatagtgcttttaacctctgagccatctctccagtccccatcatttgtg
ttctttatgaacaaggaatcatttatgtccaagtatgcacattaacacct
ttcccctgaaaccttgatgtcccgactctttcattagaatctcacaacac
atcaaggccacaggtaaataacatttacattttaaatggcaataatttga
atgcctagaatgctatgtgctgtagaatatgtgaatcaatagaataatct
acatgtgacatgcataagacaaactgataaaattcatttggaagaaatag
attgtaaagtttacttctaacatattctgtacacagacactatgattttc
ctgagtgtgtgttcaatgagacccacataaaatcactcatcatggaatca
ctcacataagctgaaaattataatctgtgtgaacatccatcaacgaggga
atctataataacaatatataatagtgttatatatataataattataacaa
tctatataatggacagagaaccacagctagacacaacatatggaaaaatc
ttacaaatatatgtgaaaagaaagcctttagagtgtcataaactatgatt
tcttgcttcataaatgcttaaattcaagaaaatagcatagaccacaggtt
atcttagcactcacatatgatgtggggtaagaataatctttttttaacat
gaagtgtgcaatgacctgatttacacattgaatttctgtggcctcgattg
atgaaggaaagaccggaagcaggagctcagctatgttcctcagggctatg
gactagacagcctcagagatttcacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21097942_21099146
seq2: B6Ng01-134C02.b_46_1256

seq1  GAATTCTTGGTATAAACAAATGCACCACCAAGTGATCTTTGATCATTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTATAAACAAATGCACCACCAAGTGATCTTTGATCATTACC  50

seq1  ATCCTTGAATGTGATCAAAGATATTAAAAATCTAATAACGTCTAACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAATGTGATCAAAGATATTAAAAATCTAATAACGTCTAACATCC  100

seq1  ATGTGGGACACTTTTTTATTGTCCAGAGTTATTTCTACAACTGTCATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGACACTTTTTTATTGTCCAGAGTTATTTCTACAACTGTCATTTA  150

seq1  TTATCTTTGGTGCTGCAGGCAATTTGCTGGGTATCTCTAACCTCTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGGTGCTGCAGGCAATTTGCTGGGTATCTCTAACCTCTCTGGT  200

seq1  TCCAAACCTCCAAAAGGGGATTCCTTTTTAAATGTTTTTATTAGCGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCTCCAAAAGGGGATTCCTTTTTAAATGTTTTTATTAGCGTATA  250

seq1  TTAATTATACATAATAATTGTTTCATTATGACATTTCAAACACGCACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATACATAATAATTGTTTCATTATGACATTTCAAACACGCACGTG  300

seq1  ATATATTTCAGTCATATTCACCTCGTGATACTGTCTCTTGTCCTTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTCAGTCATATTCACCTCGTGATACTGTCTCTTGTCCTTCTCCC  350

seq1  ACACACAATTAATACTCTTCCATTTTCCTGCTAGCCCCACCCCCTTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAATTAATACTCTTCCATTTTCCTGCTAGCCCCACCCCCTTTACT  400

seq1  TTCATGGCTCTGTGTCTGAGTGGGGTGCAATGATTTCACTAGGGTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTCTGTGTCTGAGTGGGGTGCAATGATTTCACTAGGGTTATTT  450

seq1  ACAGATATATGGATGGGAACCAGGAGGGAAAAGAAGAGTGCAGGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATATGGATGGGAACCAGGAGGGAAAAGAAGAGTGCAGGAGGAAG  500

seq1  AAGGAGAAGCCAGCACGGGTTAGGAGTCAACAGAATGTGACCTTGAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGCCAGCACGGGTTAGGAGTCAACAGAATGTGACCTTGAGGGC  550

seq1  TGCCTAACTAGAGTTAAGAGCAGTCCAGATGAAACATAGTAAGTAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACTAGAGTTAAGAGCAGTCCAGATGAAACATAGTAAGTAATAAC  600

seq1  TCGGGTTATAGAAAGGAAAGTATATTCTAACAACATAGAGGGTAGGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTTATAGAAAGGAAAGTATATTCTAACAACATAGAGGGTAGGATCT  650

seq1  GCCCAGCTCTTATGTTGTTTAAGGCTTATTGCCGGGAGGTGGTGACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTCTTATGTTGTTTAAGGCTTATTGCCGGGAGGTGGTGACACAT  700

seq1  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  750

seq1  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACATCCAAGGCTATACA  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACATCCAAAGCTATACA  800

seq1  GAGAAACCCTGTCTCGAAAAACAAAAACAAAACAAACAAACAAACAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGAAAAACAAAAACAAAACAAACAAACAAACAAACA  850

seq1  AAAGGCTTATTGTAAATATAAAAGTTGTGTGTGTGTCCTTCATCTGGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTATTGTAAATATAAAAGTTGTGTGTGTGTCCTTCATCTGGAAC  900

seq1  TTAAATAGCTAAAGCGGTGTAGAAACCTCGGGCCGAGATCTAATACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCTAAAGCGGTGTAGAAACCTCGGGCCGAGATCTAATACATTT  950

seq1  TATTACAATGATGGACATAGTAAGGAAGAGAGTGGTAGCAGAGGAATGAT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATTACAATGATGGACATAGTAAGG-AGAGAGTGGTAGCAGAGGAATGAT  999

seq1  GTTATGGAACC-TGTCTGCATGAACACCTCACACAACATTCAATGACCAT  1049
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAACCTTTTCTGCATGAACACCTCACACAACATTCAATGACCAT  1049

seq1  GTCCTG-TCAT-GTGTCCTTCTGAAAGGGACAGAACTTTTATCACCCTTT  1097
      |||||| |||| |||||||||||||||||| |||||||| || |||||||
seq2  GTCCTGTTCATGGTGTCCTTCTGAAAGGGAAAGAACTTTAATAACCCTTT  1099

seq1  CAGGAACTATTAT-AATATCTTGTCTT-GTGTTTTAAA-CTTGAAATCCT  1144
      ||||||||||||| ||||||||||||| | |||||||| |||||||||||
seq2  CAGGAACTATTATAAATATCTTGTCTTGGGGTTTTAAACCTTGAAATCCT  1149

seq1  AGC-ATGTATCATAGTATGTAGGAG-GATCATCTATTCCAGATCCACCTC  1192
      ||| ||||||   || ||||||||| |||    ||||| | | | |||||
seq2  AGCAATGTAT-TCAGAATGTAGGAGAGATAGCTTATTCGATA-CAACCTC  1197

seq1  -TCAGAGTAGTGTC  1205
       |||||||||||||
seq2  TTCAGAGTAGTGTC  1211

seq1: chr13_21238244_21239501
seq2: B6Ng01-134C02.g_66_1294 (reverse)

seq1  ACAGGTGAAAATTCTTGAGGCTGTCTTAAGTTCAATGACTGGAAATGTAA  50
      ||||||||||  || |||||||||||  ||| ||  | |  ||   | ||
seq2  ACAGGTGAAATCTC-TGAGGCTGTCT--AGTCCATAGCCCTGA---GGAA  44

seq1  CACTAGCTGAGAGCCTCCTGCCTTCTCGCTC-TTCCTTCATTCCTATCTG  99
      || ||||||||   |||||| |||| || || |||||||||  | |||  
seq2  CA-TAGCTGAG---CTCCTG-CTTC-CGGTCTTTCCTTCAT--CAATCGA  86

seq1  AGTCACAGGAAATCATAGTGTTAAATCATGTTCATTGCACAC-TCATGTT  148
       | ||||| || |||  ||| ||||||| | ||||||||||| ||||| |
seq2  GGCCACAGAAATTCAATGTG-TAAATCA-GGTCATTGCACACTTCATG-T  133

seq1  TAAAAAAAGATATATCTTACCCCACATTCATATGTGAGTGCTTAGATAAC  198
      |||||||||||   |||||||||||| ||||||||||||||| |||||||
seq2  TAAAAAAAGATTATTCTTACCCCACA-TCATATGTGAGTGCTAAGATAAC  182

seq1  CTGTGGTCTTATGCTTATTTTCTTTGAATTTAAGCATTTAATTGAAGCAA  248
      |||||||| ||||| ||||||| |||||||||||||||||  |||||| |
seq2  CTGTGGTC-TATGC-TATTTTC-TTGAATTTAAGCATTTA--TGAAGC-A  226

seq1  AGAAATCATAGTTTATGACACTCTAAAGGCTTTTCTTTTTCACATAATAT  298
      |||||||||||||||||||||||||||||||||   ||||||||| ||| 
seq2  AGAAATCATAGTTTATGACACTCTAAAGGCTTT--CTTTTCACAT-ATA-  272

seq1  TTTGTAAGATTTATTCCATATGTTGTGTCTAGCTGTGGTTCTCTGTCCAT  348
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGATTT-TTCCATATGTTGTGTCTAGCTGTGGTTCTCTGTCCAT  321

seq1  TATTATAGATTGTTATAATTATTATATATTATAACACTATTATATATTGT  398
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TA-TATAGATTGTTATAATTATTATATA-TATAACACTATTATATATTGT  369

seq1  TATTATAGATTCCCTCGTTGATGGATGTTCACACAGATTATAATTTTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGATTCCCTCGTTGATGGATGTTCACACAGATTATAATTTTCAG  419

seq1  CTTATGTGAGTGATTCCATGATGAGTGATTTTATGTGGGTCTCATTGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGAGTGATTCCATGATGAGTGATTTTATGTGGGTCTCATTGAAC  469

seq1  ACACACTCAGGAAAATCATAGTGTCTGTGTACAGAATATGTTAGAAGTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCAGGAAAATCATAGTGTCTGTGTACAGAATATGTTAGAAGTAA  519

seq1  ACTTTACAATCTATTTCTTCCAAATGAATTTTATCAGTTTGTCTTATGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAATCTATTTCTTCCAAATGAATTTTATCAGTTTGTCTTATGCA  569

seq1  TGTCACATGTAGATTATTCTATTGATTCACATATTCTACAGCACATAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATGTAGATTATTCTATTGATTCACATATTCTACAGCACATAGCA  619

seq1  TTCTAGGCATTCAAATTATTGCCATTTAAAATGTAAATGTTATTTACCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCATTCAAATTATTGCCATTTAAAATGTAAATGTTATTTACCTG  669

seq1  TGGCCTTGATGTGTTGTGAGATTCTAATGAAAGAGTCGGGACATCAAGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGATGTGTTGTGAGATTCTAATGAAAGAGTCGGGACATCAAGGT  719

seq1  TTCAGGGGAAAGGTGTTAATGTGCATACTTGGACATAAATGATTCCTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGAAAGGTGTTAATGTGCATACTTGGACATAAATGATTCCTTGT  769

seq1  TCATAAAGAACACAAATGATGGGGACTGGAGAGATGGCTCAGAGGTTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGAACACAAATGATGGGGACTGGAGAGATGGCTCAGAGGTTAAA  819

seq1  AGCACTATCTGCTTTCAATTCCCAGTAACCACATGGTGTCACAACTATCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATCTGCTTTCAATTCCCAGTAACCACATGGTGTCACAACTATCT  869

seq1  ATAAGAGGGATCTAATGCCCTCTTCTGGCACACAGGTATATATGTGAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGGATCTAATGCCCTCTTCTGGCACACAGGTATATATGTGAATA  919

seq1  GAGCACTCATATGTATTAAATAAATAATAAAAGTCTTTTTAAAAAGAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTCATATGTATTAAATAAATAATAAAAGTCTTTTTAAAAAGAAAG  969

seq1  AATCCAAATGGTTTTTTAAAGATGGAGGTCTTCTCTATTCCCATATAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAATGGTTTTTTAAAGATGGAGGTCTTCTCTATTCCCATATAGAG  1019

seq1  CTATATAAAATAAATAAAGTCTTTAAAAATAAAAAATAAATTAAAATCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAAATAAATAAAGTCTTTAAAAATAAAAAATAAATTAAAATCCA  1069

seq1  AATGGTTAAGAAAAATGGGGGTGGGATGATCTTTTCTTCTTTGACTCCCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTAAGAAAAATGGGGGTGGGATGATCTTTTCTTCTTTGACTCCCT  1119

seq1  GTCTGGTAATTCACTGGTTTTGGGTTTTGGTTTTTGGTTGTTTGGTTTTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTAATTCACTGGTTTTGGGTTTTGGTTTTTGGTTGTTTGGTTTTT  1169

seq1  GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGGTTTTTTTTAAA  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGGTTTTTTTTAAA  1219

seq1  GGTGGAATTC  1258
      ||||||||||
seq2  GGTGGAATTC  1229