BAC Information

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BAC

Clone NameB6Ng01-134K12
Chromosome13 (Build37)
Map Location 21,977,260 - 22,157,338
singlet/doubletdoublet
Overlap geneLOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
Downstream geneLOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134K12.bB6Ng01-134K12.g
ACCDH934898DH934899
length1,147738
definitionDH934898|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K12, 5' end.DH934899|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,977,260 - 21,978,400)(22,156,801 - 22,157,338)
sequence
gaattccacaaagcagccacatcctgagtcttttcatcatctctggtttt
aatttaataactttatacattttaaagcaaacagaatctgtattttgtgt
gtatgtgtctggctgttttcaatatgatctctgaaatttgtattatttgt
tatgtatttatttttgttggttgcataagtgtcatcgttcattgtgggtg
tttgtttgtttgtttgtttgtgacagggtctgaagtcacctgggcctagc
cttgaacaccagtacatggaagataaagactctgaagtcccagttctcct
tcctcacctcatgctaggatcatgggctttgtctatgcatatgactgtaa
aaacagactaagctaggtgtagtagttcaggcctgtgataaaaatgagca
acaacaagaagaaaagtcttctttcccatcaatgtctactttccagatct
tctacaatatagttagtcattttagtgctgggttgtctccagcccaagct
attataaaaatcacgacctaatcgatcttgcacgtgattttgggtgaact
tagacactcgtttgtcagatcaacaggcagacagacagaagaaattgctg
gtttgtaagatacgtatctatatttaatattatgaaatgcttctaaacat
tctatgaaaactcatattatgtccagctcagatagcacttgaccattgtc
agaatttgattttagctatttgaccagggatgttgtgatagctgaaccta
ccatgtacatcagaataaccttcaacttgtgacttgcctcctcctcctct
tcctctttctcctcttctttttcctcctcttttttctcttccttctcttc
cttctcctcctcctccttatctgatgctgctagtatagacatgcttcatg
gtgttcaacttttcttagtcttatggaaacaaaaatctctctctctgtga
cccaaaactgggccttgagctaccttaatcttctggcctcggccactaaa
gtactggacatttaggcaagaagccactattcccaactaacatttttttc
agatggattttaaggtaggcatataaaccaataaattattatactttatt
tccgttaacccacctttcccaactccgtccatcttccatatatatgt
gaattccttttttttttttaagggatggggggggggaatcagaaaataaa
atggttagacttaagaaagctacctgtagcacttgttgtctagtctctgt
atgctttgaaagttcagggtttaactgaagtcctgatgtctaaaaggctg
gatgaactggagttattggggatcagcagccattcctgaagctgttctgg
aaataagtctctagaaacaacatcagatgaggcaagatcaggcagggagc
tggaaatgacttgctagtcatttcagcatccccaggggtgaattttgtca
aaactgcttcttgatgtttcattctgaaatatatgaatcttacaagaaat
atttagttctataaagatagttgtatggatggattgtacaagatgcagta
gttacagcaatgtaactgtgacaactgaggtcccagagagaagttgtgac
agccaaggctctacaacacttagatacaaatgcagttccaggaggctcac
ctttttaggtcaaaccagaacctgactgcaccacagctgccaaggtgagt
ggacctggaggtctctggtttatacaagtgccaagtaaatttcccacaga
aagccaaaatgtttcatctctttttctagtgttctaggggcgtcaagaga
gggttttgaaatacgtaagaccttcccctctactgccctatacctaaatt
ttgtgtggctaagcccaagagaataaatgaggacgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21977260_21978400
seq2: B6Ng01-134K12.b_48_1194

seq1  GAATTCCACAAAGCAGCCACATCCTGAGTCTTTTCATCATCTCTGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAAGCAGCCACATCCTGAGTCTTTTCATCATCTCTGGTTTT  50

seq1  AATTTAATAACTTTATACATTTTAAAGCAAACAGAATCTGTATTTTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAACTTTATACATTTTAAAGCAAACAGAATCTGTATTTTGTGT  100

seq1  GTATGTGTCTGGCTGTTTTCAATATGATCTCTGAAATTTGTATTATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTCTGGCTGTTTTCAATATGATCTCTGAAATTTGTATTATTTGT  150

seq1  TATGTATTTATTTTTGTTGGTTGCATAAGTGTCATCGTTCATTGTGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTATTTTTGTTGGTTGCATAAGTGTCATCGTTCATTGTGGGTG  200

seq1  TTTGTTTGTTTGTTTGTTTGTGACAGGGTCTGAAGTCACCTGGGCCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTGACAGGGTCTGAAGTCACCTGGGCCTAGC  250

seq1  CTTGAACACCAGTACATGGAAGATAAAGACTCTGAAGTCCCAGTTCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACACCAGTACATGGAAGATAAAGACTCTGAAGTCCCAGTTCTCCT  300

seq1  TCCTCACCTCATGCTAGGATCATGGGCTTTGTCTATGCATATGACTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTCATGCTAGGATCATGGGCTTTGTCTATGCATATGACTGTAA  350

seq1  AAACAGACTAAGCTAGGTGTAGTAGTTCAGGCCTGTGATAAAAATGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACTAAGCTAGGTGTAGTAGTTCAGGCCTGTGATAAAAATGAGCA  400

seq1  ACAACAAGAAGAAAAGTCTTCTTTCCCATCAATGTCTACTTTCCAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAAGAAAAGTCTTCTTTCCCATCAATGTCTACTTTCCAGATCT  450

seq1  TCTACAATATAGTTAGTCATTTTAGTGCTGGGTTGTCTCCAGCCCAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATATAGTTAGTCATTTTAGTGCTGGGTTGTCTCCAGCCCAAGCT  500

seq1  ATTATAAAAATCACGACCTAATCGATCTTGCACGTGATTTTGGGTGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAATCACGACCTAATCGATCTTGCACGTGATTTTGGGTGAACT  550

seq1  TAGACACTCGTTTGTCAGATCAACAGGCAGACAGACAGAAGAAATTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTCGTTTGTCAGATCAACAGGCAGACAGACAGAAGAAATTGCTG  600

seq1  GTTTGTAAGATACGTATCTATATTTAATATTATGAAATGCTTCTAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAGATACGTATCTATATTTAATATTATGAAATGCTTCTAAACAT  650

seq1  TCTATGAAAACTCATATTATGTCCAGCTCAGATAGCACTTGACCATTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAAACTCATATTATGTCCAGCTCAGATAGCACTTGACCATTGTC  700

seq1  AGAATTTGATTTTAGCTATTTGACCAGGGATGTTGTGATAGCTGAACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGATTTTAGCTATTTGACCAGGGATGTTGTGATAGCTGAACCTA  750

seq1  CCATGTACATCAGAATAACCTTCAACTTGTGACTTGCCTCCTCCTCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACATCAGAATAACCTTCAACTTGTGACTTGCCTCCTCCTCCTCT  800

seq1  TCCTCTTTCTCCTCTTCTTTTTCCTCCTCTTTTTTCTCTTCCTTCTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCTCCTCTTCTTTTTCCTCCTCTTTTTTCTCTTCCTTCTCTTC  850

seq1  CTTCTCCTCCTCCTCCTTATCTGATGCTGCTAGTATAGACATGCTTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCCTCCTCCTTATCTGATGCTGCTAGTATAGACATGCTTCATG  900

seq1  GTGTTCAAC-TTTCTTAGTCTTAT-GAAAC-AAAATCTCTCTCTCTGTGA  947
      ||||||||| |||||||||||||| ||||| |||||||||||||||||||
seq2  GTGTTCAACTTTTCTTAGTCTTATGGAAACAAAAATCTCTCTCTCTGTGA  950

seq1  CCC-AAACT-GGCCTTGAGCTACCTTAATCTTCCTGCCTCGGCCACTAAA  995
      ||| ||||| |||||||||||||||||||||||  |||||||||||||||
seq2  CCCAAAACTGGGCCTTGAGCTACCTTAATCTTCTGGCCTCGGCCACTAAA  1000

seq1  GTACT-GACATATAGGCAAG-AGCCACTATTCCCAACTAAC--TTTTTTC  1041
      ||||| ||||| |||||||| ||||||||||||||||||||  |||||||
seq2  GTACTGGACATTTAGGCAAGAAGCCACTATTCCCAACTAACATTTTTTTC  1050

seq1  AGATGATTTTTAAAGTTAGCATATAAA-CTATATATTATTATACTTTATT  1090
      |||||  |||||| ||  ||||||||| | ||| ||||||||||||||||
seq2  AGATGGATTTTAAGGTAGGCATATAAACCAATAAATTATTATACTTTATT  1100

seq1  CCCATTAACCCA-CTTTCCCAACTCCTTTCCCCAATCTTCCCTATATTAT  1139
       || |||||||| ||||||||||||| |    | ||||||| |||| |||
seq2  TCCGTTAACCCACCTTTCCCAACTCCGT----CCATCTTCCATATA-TAT  1145

seq1  GT  1141
      ||
seq2  GT  1147

seq1: chr13_22156801_22157338
seq2: B6Ng01-134K12.g_256_804 (reverse)

seq1  CCTCGTCCTC-CTTCTTCTCTT-GGCTTAGCCACAC-AAATTTAGGTATA  47
      ||||||||||  || ||||||| ||||||||||||| |||||||||||||
seq2  CCTCGTCCTCATTTATTCTCTTGGGCTTAGCCACACAAAATTTAGGTATA  50

seq1  -GGCAGTAGA-GGGAAGGTCTTACGTATTTC-AAACCCTCTCTTGACG-C  93
       ||||||||| |||||||||||||||||||| |||||||||||||||| |
seq2  GGGCAGTAGAGGGGAAGGTCTTACGTATTTCAAAACCCTCTCTTGACGCC  100

seq1  CCTAGAACACTAG-AAAAGAGATG-AACATTTTGGC-TTCTGTGGGAAAT  140
      ||||||||||||| |||||||||| ||||||||||| |||||||||||||
seq2  CCTAGAACACTAGAAAAAGAGATGAAACATTTTGGCTTTCTGTGGGAAAT  150

seq1  TTACTTGGCACTTGTATAAACCAGAGACCTCCAGGTCCACTCACCTTGGC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGCACTTGTATAAACCAGAGACCTCCAGGTCCACTCACCTTGGC  200

seq1  AGCTGTGGTGCAGTCAGGTTCTGGTTTGACCT-AAAAGGTGAGCCTCCTG  239
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCTGTGGTGCAGTCAGGTTCTGGTTTGACCTAAAAAGGTGAGCCTCCTG  250

seq1  GAACTGCATTTGTATCTAAGTGTTGTAGAGCCTTGGCTGTCACAACTTCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATTTGTATCTAAGTGTTGTAGAGCCTTGGCTGTCACAACTTCT  300

seq1  CTCTGGGACCTCAGTTGTCACAGTTACATTGCTGTAACTACTGCATCTTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGACCTCAGTTGTCACAGTTACATTGCTGTAACTACTGCATCTTG  350

seq1  TACAATCCATCCATACAACTATCTTTATAGAACTAAATATTTCTTGTAAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCCATCCATACAACTATCTTTATAGAACTAAATATTTCTTGTAAG  400

seq1  ATTCATATATTTCAGAATGAAACATCAAGAAGCAGTTTTGACAAAATTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATTTCAGAATGAAACATCAAGAAGCAGTTTTGACAAAATTCA  450

seq1  CCCCTGGGGATGCTGAAATGACTAGCAAGTCATTTCCAGCTCCCTGCCTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGGATGCTGAAATGACTAGCAAGTCATTTCCAGCTCCCTGCCTG  500

seq1  ATCTTGCCTCATCTGATGTTGTTTCTAGAGACTTATTTCCAGAACAGCT  538
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTCATCTGATGTTGTTTCTAGAGACTTATTTCCAGAACAGCT  549