BAC Information

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BAC

Clone NameB6Ng01-134M02
Chromosome13 (Build37)
Map Location 76,508,196 - 76,648,666
singlet/doubletdoublet
Overlap geneMctp1
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M02.bB6Ng01-134M02.g
ACCDH934972DH934973
length1,1631,085
definitionDH934972|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M02, 5' end.DH934973|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,647,492 - 76,648,666)(76,508,196 - 76,509,198)
sequence
gaattcttctgacacatttgaaatgacagaaggctgcctcttattttctg
cagtctcacacacaggtgaaaattgctcagacaactagagatctggcttt
ccacacttttcccccactgggaaaattgacttaaatgtgtttcctttctt
tttcttctttactatccaatttatctcactgttttattcctttccgagag
ttttaaatgacctccaacacagaagtctaaacatataagtgttcagatca
aaacatccctctccagaaacaaagcagcaagaatttgtgttttgcatgaa
agcatttaagaacatcttgcataattccactataactcttgctttcttat
taacagtaattccaattactctaaaactctttccagcattgggagggttc
ttaaaagtatagtattctgttctcccaaaacaccaggatgaaaaaaacaa
acaaacaaaaaaaccaaaaaaccaaaaccaaaaataaaaacaaaaagcct
ctctctgaactgcctcccaggctcagataactttcttcaccgtgagcatt
tctttggcaccagcacctgtgctatccagaagattgcagacttactcaga
agagagagagcactcctttttgctcagaggtgtttggttcataattcact
cagaacacatacttgttgagtggaaaaggaagcaatggagagaggctatg
gtgtttcatgtgtgtcaccccttccatatgctttatgtcaaaaactcagt
attactcaagtagaaaaggatgaggacagaagagaagaaggaggaaaagg
agaagaacataaggatacaactgccaccaacaccctggaacatacagtat
caagtgacacattttggagatgacttcagaatagaactcagcaatcccct
gaactgtccaagaataattagctagagctcttgtgtaactctgatattca
gaaaacaagaagttaattacattaagcaatggatatggcatgtggaggca
acagacaatgttcagtcattaaagttaaatgaatcttaacaaggaagcat
aacaaataaaacagaagactttgcatccttagctaagggagtgacttaca
aagactgtctcagactgaaatcgtctagggtgctcagaatagctacactt
gctcatctggtaa
gaattccagttttatgttcaattccaaattccttacaaaactgtataaag
ttgtttccagtataagcagggccactatctgtcttgatgattttaggcaa
tctcatagcagtaaaagcctgtaagcaatatcaattacatttccagaagc
ttctcctgtatgtagagaagcaaaaatgagtcctcaacaagtgtcaatac
agacatgtatatatttcaattttgcaaattctgaataatgagatacatct
atttgccaaatatgattgggcataaggtctcacggattaacccctaaaca
aggaacttgagacaatgtaagacagtcaggacatcgctttacaatcattc
tagcttgctccttagtgatcttatgtaggagccttaaggtatgactagaa
agatgaattttattgtgaccacatttaggcaaaatgataggatctgaaac
aaaagcttctcctatcaaatctctgtcagtgcaatcattgcctgcagcta
aaggtctgggaagatcagaatgagctcttagatgaccaatataaaaagga
ttttttttttccgagcaagaatagagttttgtgccacaccaactccagta
ggatctgtgtgacaagttccacagactgaggcgattgagctcaaaaggtc
ctgtaggtgtatgagtcatactaaaaaatcaacacatgtaaaggcaaaga
ataatctatataagtaacaaattggttttcagtagctctttctacttgtt
gtaaggccaacaacccttctgaagtaaaactcgaggagaggtaggatcag
cacaggcaggaggatttttgaatttcaaggccagcctgatctacaaaagt
gagttacaacacagccagggctatacagagaaccctgtctcgaaaaaaca
aagcaaataaaaaaaaacaaaaaccaaaaccaacaaccaacaaaaacaaa
agaacccccccccaaaaaagaattcaatagggttcaatctctgtagtaag
ttatatagatgagcaagtaatatcagctaacagctttgaaatcatttaat
ttaatgtcctacaatatttatttgaggaaaacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76647492_76648666
seq2: B6Ng01-134M02.b_49_1211 (reverse)

seq1  TTACCAAGATGAGCAAGTGTAAGCTTAATTCTGAGCA-CCTAGACGATAT  49
      ||||| |||||||||||||| ||||  |||||||||| |||||||||| |
seq2  TTACC-AGATGAGCAAGTGT-AGCT--ATTCTGAGCACCCTAGACGAT-T  45

seq1  TCATGTCTGAGACAAGTCTTTTGTAGTCACTCCCTTTAGGCTTAGGGTGC  99
      ||| ||||||||| |||||||   ||||||||||||   ||| ||| |||
seq2  TCA-GTCTGAGAC-AGTCTTTGTAAGTCACTCCCTT--AGCTAAGGATGC  91

seq1  AAAGTC-TCTGTTTTTATTTTGTTATGCCTTCCTTTGTTAAGATTCATTT  148
      |||||| ||||||||   ||||||||| ||||| ||||||||||||||||
seq2  AAAGTCTTCTGTTTT--ATTTGTTATG-CTTCC-TTGTTAAGATTCATTT  137

seq1  TACTTTTAATGACTGAACATTTGTCTGTTGCCTCCACATGCCATATCCAT  198
       || ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAC-TTTAATGACTGAACA-TTGTCTGTTGCCTCCACATGCCATATCCAT  185

seq1  TGC-TAATGTAATTAACTTCTTGTTTTCTGAATATCAGAGTTACACAAGA  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATGTAATTAACTTCTTGTTTTCTGAATATCAGAGTTACACAAGA  235

seq1  GCTCTAGCTAATTATTCTTGGACAGTTCAGGGGATTGCTGAGTTCTATTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCTAATTATTCTTGGACAGTTCAGGGGATTGCTGAGTTCTATTC  285

seq1  TGAAGTCATCTCCAAAATGTGTCACTTGATACTGTATGTTCCAGGGTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCATCTCCAAAATGTGTCACTTGATACTGTATGTTCCAGGGTGTT  335

seq1  GGTGGCAGTTGTATCCTTATGTTCTTCTCCTTTTCCTCCTTCTTCTCTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGTTGTATCCTTATGTTCTTCTCCTTTTCCTCCTTCTTCTCTTC  385

seq1  TGTCCTCATCCTTTTCTACTTGAGTAATACTGAGTTTTTGACATAAAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCATCCTTTTCTACTTGAGTAATACTGAGTTTTTGACATAAAGCA  435

seq1  TATGGAAGGGGTGACACACATGAAACACCATAGCCTCTCTCCATTGCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGGGTGACACACATGAAACACCATAGCCTCTCTCCATTGCTTC  485

seq1  CTTTTCCACTCAACAAGTATGTGTTCTGAGTGAATTATGAACCAAACACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACTCAACAAGTATGTGTTCTGAGTGAATTATGAACCAAACACC  535

seq1  TCTGAGCAAAAAGGAGTGCTCTCTCTCTTCTGAGTAAGTCTGCAATCTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAAAAGGAGTGCTCTCTCTCTTCTGAGTAAGTCTGCAATCTTC  585

seq1  TGGATAGCACAGGTGCTGGTGCCAAAGAAATGCTCACGGTGAAGAAAGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCACAGGTGCTGGTGCCAAAGAAATGCTCACGGTGAAGAAAGTT  635

seq1  ATCTGAGCCTGGGAGGCAGTTCAGAGAGAGGCTTTTTGTTTTTATTTTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCCTGGGAGGCAGTTCAGAGAGAGGCTTTTTGTTTTTATTTTTG  685

seq1  GTTTTGGTTTTTTGGTTTTTTTGTTTGTTTGTTTTTTTCATCCTGGTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTTTTTGGTTTTTTTGTTTGTTTGTTTTTTTCATCCTGGTGTT  735

seq1  TTGGGAGAACAGAATACTATACTTTTAAGAACCCTCCCAATGCTGGAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAACAGAATACTATACTTTTAAGAACCCTCCCAATGCTGGAAAG  785

seq1  AGTTTTAGAGTAATTGGAATTACTGTTAATAAGAAAGCAAGAGTTATAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGAGTAATTGGAATTACTGTTAATAAGAAAGCAAGAGTTATAGT  835

seq1  GGAATTATGCAAGATGTTCTTAAATGCTTTCATGCAAAACACAAATTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATGCAAGATGTTCTTAAATGCTTTCATGCAAAACACAAATTCTT  885

seq1  GCTGCTTTGTTTCTGGAGAGGGATGTTTTGATCTGAACACTTATATGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTGTTTCTGGAGAGGGATGTTTTGATCTGAACACTTATATGTTT  935

seq1  AGACTTCTGTGTTGGAGGTCATTTAAAACTCTCGGAAAGGAATAAAACAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTGTGTTGGAGGTCATTTAAAACTCTCGGAAAGGAATAAAACAG  985

seq1  TGAGATAAATTGGATAGTAAAGAAGAAAAAGAAAGGAAACACATTTAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAATTGGATAGTAAAGAAGAAAAAGAAAGGAAACACATTTAAGT  1035

seq1  CAATTTTCCCAGTGGGGGAAAAGTGTGGAAAGCCAGATCTCTAGTTGTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCCAGTGGGGGAAAAGTGTGGAAAGCCAGATCTCTAGTTGTCT  1085

seq1  GAGCAATTTTCACCTGTGTGTGAGACTGCAGAAAATAAGAGGCAGCCTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTTTCACCTGTGTGTGAGACTGCAGAAAATAAGAGGCAGCCTTC  1135

seq1  TGTCATTTCAAATGTGTCAGAAGAATTC  1175
      ||||||||||||||||||||||||||||
seq2  TGTCATTTCAAATGTGTCAGAAGAATTC  1163

seq1: chr13_76508196_76509198
seq2: B6Ng01-134M02.g_189_1153

seq1  GTAAGCAATATCAATTACATTTCCAGAAGCTTCTCCTGTATGTAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAATATCAATTACATTTCCAGAAGCTTCTCCTGTATGTAGAGAAG  50

seq1  CAAAAATGAGTCCTCAACAAGTGTCAATACAGACATGTATATATTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGAGTCCTCAACAAGTGTCAATACAGACATGTATATATTTCAAT  100

seq1  TTTGCAAATTCTGAATAATGAGATACATCTATTTGCCAAATATGATTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTCTGAATAATGAGATACATCTATTTGCCAAATATGATTGGG  150

seq1  CATAAGGTCTCACGGATTAACCCCTAAACAAGGAACTTGAGACAATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTCTCACGGATTAACCCCTAAACAAGGAACTTGAGACAATGTAA  200

seq1  GACAGTCAGGACATCGCTTTACAATCATTCTAGCTTGCTCCTTAGTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCAGGACATCGCTTTACAATCATTCTAGCTTGCTCCTTAGTGATC  250

seq1  TTATGTAGGAGCCTTAAGGTATGACTAGAAAGATGAATTTTATTGTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGGAGCCTTAAGGTATGACTAGAAAGATGAATTTTATTGTGACC  300

seq1  ACATTTAGGCAAAATGATAGGATCTGAAACAAAAGCTTCTCCTATCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGGCAAAATGATAGGATCTGAAACAAAAGCTTCTCCTATCAAAT  350

seq1  CTCTGTCAGTGCAATCATTGCCTGCAGCTAAAGGTCTGGGAAGATCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCAGTGCAATCATTGCCTGCAGCTAAAGGTCTGGGAAGATCAGAA  400

seq1  TGAGCTCTTAGATGACCAATATAAAAAGGATTTTTTTTTTCCGAGCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTAGATGACCAATATAAAAAGGATTTTTTTTTTCCGAGCAAGA  450

seq1  ATAGAGTTTTGTGCCACACCAACTCCAGTAGGATCTGTGTGACAAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTTTGTGCCACACCAACTCCAGTAGGATCTGTGTGACAAGTTCC  500

seq1  ACAGACTGAGGCGATTGAGCTCAAAAGGTCCTGTAGGTGTATGAGTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGAGGCGATTGAGCTCAAAAGGTCCTGTAGGTGTATGAGTCATA  550

seq1  CTAAAAAATCAACACATGTAAAGGCAAAGAATAATCTATATAAGTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAATCAACACATGTAAAGGCAAAGAATAATCTATATAAGTAACAA  600

seq1  ATTGGTTTTCAGTAGCTCTTTCTACTTGTTGTAAGGCCAACAACCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTTCAGTAGCTCTTTCTACTTGTTGTAAGGCCAACAACCCTTCT  650

seq1  GAAGTTAAAACTCGAGGAGAGGTAGGATCAGCACAGGCAGGAGGATTTTT  700
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAG-TAAAACTCGAGGAGAGGTAGGATCAGCACAGGCAGGAGGATTTTT  699

seq1  GAA-TTCAAGGCCAGCCTGATCTACAAAAGTGAGTTACAACACAGCCAGG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAAGGCCAGCCTGATCTACAAAAGTGAGTTACAACACAGCCAGG  749

seq1  GCTATACAGAGAAACCCTGTCTCGAAAAAAACAAAGCAAAAAAAAAAAAA  799
      ||||||||||| |||||||||||| ||||||||||||||| |||||||||
seq2  GCTATACAGAG-AACCCTGTCTCG-AAAAAACAAAGCAAATAAAAAAAAA  797

seq1  ACAAAAAACCAAAAACC-AAACAAACAAACAAAAAAACAAAAAAGAAACA  848
               |||||||| |||| ||||| ||| |||| | |||||||   
seq2  ---------CAAAAACCAAAACCAACAACCAACAAAA-ACAAAAGAA--C  835

seq1  CACACACAAAAAAAGAATATCAAATAAGGGTTTCAATTCTCCTGTAGTAA  898
      | | | | |||||||||| || ||||  || ||||| ||| |||||||||
seq2  CCCCCCCCAAAAAAGAAT-TC-AATA--GGGTTCAA-TCT-CTGTAGTAA  879

seq1  GTTTATATAAGGATGAAGCAAAGTAATATCAGCTAACAGCTTTTGAAAAT  948
      | |||||||  |||| ||| |||||||||||||||||||||||   ||||
seq2  G-TTATATA--GATG-AGC-AAGTAATATCAGCTAACAGCTTT--GAAAT  922

seq1  CATTTAAAATTTTAAAATTGTCCCTACAAATAATTATATTTTGAGGAAAA  998
      |||||||   |||||   ||| ||||| |||| |||   ||||||| |||
seq2  CATTTAA---TTTAA---TGT-CCTAC-AATATTTA---TTTGAGG-AAA  960

seq1  ACAGC  1003
      |||||
seq2  ACAGC  965