BAC Information

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BAC

Clone NameB6Ng01-135C13
Chromosome13 (Build37)
Map Location 64,366,491 - 64,485,342
singlet/doubletdoublet
Overlap geneCdc14b, 1110018J18Rik, Ctsl
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4
Downstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C13.bB6Ng01-135C13.g
ACCDH935270DH935271
length1,1951,161
definitionDH935270|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C13, 5' end.DH935271|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,484,150 - 64,485,342)(64,366,491 - 64,367,676)
sequence
gaattctctggtaaagccaagactatgggtgtattcccttcctccccaag
gaagccctagtctaataatgaatgctctgtgaatattgacaaagaaagat
atccatgggatgacagcagacataaaacagacagaggaagacactcacga
tgatagtggtacaaaaggcacagagaagacagccgtggtaacaccagatg
taaaatagaggagttagagagatgattcagcaggtaagagccctggctac
tcttccagagaacctgggtttgattcccagcacccacacagtagctcaca
actgtctgtaactgattccctcttctggcatcctctggcactagccatga
atgtggtccacagacatacatgtaggcaaaaaaaaaaatgtgtaaagtaa
aaataattttaaaaattaatgaaataagccgggcgtggtggcacacgcct
ttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgagg
ccagcctggtctacagagcgagttccaggacagccagggctacacagaga
aaccctgtctcaaaaaaaaaattaatgaaatagacagatgaagataatct
atgatgccataccagatgtaaaacagcagaagatgccatgttgtgatact
agatataaatcagaggaagacactggatgcaaaagttacagtttccatga
catgtaagatcctagccatttgctaagaccttaagtggtagacaatttag
gcttctggcccatttttgtcctctgagaaagcactccaaagatctgacag
tatctagttcatactccatgtctgcaagcctatggcttgtaacacacaca
cacacacacacacacacacacacacacacacacacacacacacacctgtt
ctctccaatgggaatcattctctttcgtctccaggtgactattacaactg
tgcaggatcctaccccccagtcacagttaaagatccccaggaccagccag
gtcccttgctgagtgagctgaagcagagtcaagtgatagacgatgagccc
ttgacttacaggcacagttccattccatcccatgaagggcaacaaccagc
tttgtcagcgtcttgaagaatggtgagttaccgcacagtggactttttcc
aaaagaatacacactcaaggatcgaaggccctcctcaagcagaga
gaattcacctagagctgaagttataagaagctgaaagctggggatggaaa
gatggctcagccagcagttgagagcactgactgctcttctgaaggtcctg
agttcaaatcctagcaactacaaggtggctcacaaccatccataatgaga
tctgacgccctcttctggtgtgtctgaagacagctacagtgcactcacat
ataataaataaataaataaataaattttagatagaaaatataaggacagt
atatagtcttaactgctaagccatctctcctgccttgtttttataatcaa
ctctgtttttggaagcgtttttctacaataatctctgcataatattgaag
ccaggtcacctaaaaacaaacaaataccaatagacaccatgggggcttga
gagcacttagtgcactggtagaggacttgggttccattcccagcacccca
caacattctgtaactcgtggtccaggggatctgacacctacttctggcct
cagcaggcaccagacacacatgcaggcaaaacactcatgcacataaaaag
taatttaaaacaaaccaaacaaaaaaactaatttaaaaacaaacagccag
gcagtggtggcgcacgcctttaatcccagcacttggaaggcagaggcagg
tatatctctaagtttgaggccagtgtctggtctacagagtgagttctagg
acagccgggactacacagaaaaaccttgtctcaaaaacaaaacaaaacaa
aataaaacccaaaacaaacaaacaaaacaccaaccagaagctaaatgacc
aagtttggaagctttaaacatgagattaaagaagccatgttagaagactg
gttggcttctacagactccaattctctatgtctagtacagtttcttcacc
ttctgatcctgcttatgcaactggtaaaggtgccttccaggtgacaaacg
gctttgagatttcacataacagtatgtccagttctttgctcccccccaaa
aaaaatccaacaagcatcttaaggactgacttaggcaaaaatattctgta
gctacgttaatactgtttacggaagtgacttctcaacatattttaaatct
ttagcaaataataaaagacggttgtgggtgtccgctgtgttgattcgagg
ttaattctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64484150_64485342
seq2: B6Ng01-135C13.b_51_1245 (reverse)

seq1  TCTCTGCTTGAG--AGGCCTCTGATCCTTGAGGTTGTTTTCATCTGGAAA  48
      ||||||||||||   |||||  ||||||||||  ||| ||| | ||||||
seq2  TCTCTGCTTGAGGAGGGCCTTCGATCCTTGAGTGTGTATTCTTTTGGAAA  50

seq1  AAGTCCACTGTGCGGTTACTCACCA-TCTTCAAAGACGCTGACAAAGCTG  97
      |||||||||||||||| |||||||| ||||| ||||||||||||||||||
seq2  AAGTCCACTGTGCGGTAACTCACCATTCTTC-AAGACGCTGACAAAGCTG  99

seq1  GTTGGTGCCCTTCATTGTGTATGGAATGTGACTGTGACTGTAAGTCAAGG  147
      |||| ||||||||||   | ||||||||  |||||| |||||||||||||
seq2  GTTGTTGCCCTTCAT--GGGATGGAATGGAACTGTGCCTGTAAGTCAAGG  147

seq1  GCTCATCGTCTATCACTTGACTCTGCCTCAGCTCACTCAGC-AGTGACCT  196
      |||||||||||||||||||||||||| |||||||||||||| || |||||
seq2  GCTCATCGTCTATCACTTGACTCTGCTTCAGCTCACTCAGCAAGGGACCT  197

seq1  GGCTGGTCCTGGGGATCTTTAACTGTGACTGGGGGGTAGGATCCTGCACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTCCTGGGGATCTTTAACTGTGACTGGGGGGTAGGATCCTGCACA  247

seq1  GTTGTAATAGTCACCTGGAGACGAAAGAGAATGATTCCCATTGGAGAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATAGTCACCTGGAGACGAAAGAGAATGATTCCCATTGGAGAGAA  297

seq1  CAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  347

seq1  TGTGTGTTAC-AGCCATTAGGCTTGCAGACATGGAGTATGAACTAGATAC  395
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TGTGTGTTACAAGCCA-TAGGCTTGCAGACATGGAGTATGAACTAGATAC  396

seq1  TGTCAGATC-TTGGAGTGCTTTCTCAGAGGACAAAAATGGGCCAGAAGCC  444
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATCTTTGGAGTGCTTTCTCAGAGGACAAAAATGGGCCAGAAGCC  446

seq1  TAAATTGTCTACCACTTAAGGTCTTAGCAAATGGCTAGGATCTTACATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTCTACCACTTAAGGTCTTAGCAAATGGCTAGGATCTTACATGT  496

seq1  CATGGAAACTGTAACTTTTGCATCCAGTGTCTTCCTCTGATTTATATCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAACTGTAACTTTTGCATCCAGTGTCTTCCTCTGATTTATATCTA  546

seq1  GTATCACAACATGGCATCTTCTGCTGTTTTACATCTGGTATGGCATCATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAACATGGCATCTTCTGCTGTTTTACATCTGGTATGGCATCATA  596

seq1  GATTATCTTCATCTGTCTATTTCATTAATTTTTTTTTTGAGACAGGGTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTTCATCTGTCTATTTCATTAATTTTTTTTTTGAGACAGGGTTT  646

seq1  CTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCTCTGTAGACCAGGCTGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCTCTGTAGACCAGGCTGGC  696

seq1  CTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  746

seq1  GGCGTGTGCCACCACGCCCGGCTTATTTCATTAATTTTTAAAATTATTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGCCACCACGCCCGGCTTATTTCATTAATTTTTAAAATTATTTT  796

seq1  TACTTTACACATTTTTTTTTTTGCCTACATGTATGTCTGTGGACCACATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACACATTTTTTTTTTTGCCTACATGTATGTCTGTGGACCACATT  846

seq1  CATGGCTAGTGCCAGAGGATGCCAGAAGAGGGAATCAGTTACAGACAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTAGTGCCAGAGGATGCCAGAAGAGGGAATCAGTTACAGACAGTT  896

seq1  GTGAGCTACTGTGTGGGTGCTGGGAATCAAACCCAGGTTCTCTGGAAGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTACTGTGTGGGTGCTGGGAATCAAACCCAGGTTCTCTGGAAGAG  946

seq1  TAGCCAGGGCTCTTACCTGCTGAATCATCTCTCTAACTCCTCTATTTTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGGCTCTTACCTGCTGAATCATCTCTCTAACTCCTCTATTTTAC  996

seq1  ATCTGGTGTTACCACGGCTGTCTTCTCTGTGCCTTTTGTACCACTATCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGTTACCACGGCTGTCTTCTCTGTGCCTTTTGTACCACTATCAT  1046

seq1  CGTGAGTGTCTTCCTCTGTCTGTTTTATGTCTGCTGTCATCCCATGGATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTGTCTTCCTCTGTCTGTTTTATGTCTGCTGTCATCCCATGGATA  1096

seq1  TCTTTCTTTGTCAATATTCACAGAGCATTCATTATTAGACTAGGGCTTCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTGTCAATATTCACAGAGCATTCATTATTAGACTAGGGCTTCC  1146

seq1  TTGGGGAGGAAGGGAATACACCCATAGTCTTGGCTTTACCAGAGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGGAAGGGAATACACCCATAGTCTTGGCTTTACCAGAGAATTC  1195

seq1: chr13_64366491_64367676
seq2: B6Ng01-135C13.g_69_1229

seq1  GAATTCACCTAGAGCTGAAGTTATAAGAAGCTGAAAGCTGGGGATGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGAGCTGAAGTTATAAGAAGCTGAAAGCTGGGGATGGAAA  50

seq1  GATGGCTCAGCCAGCAGTTGAGAGCACTGACTGCTCTTCTGAAGGTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGCCAGCAGTTGAGAGCACTGACTGCTCTTCTGAAGGTCCTG  100

seq1  AGTTCAAATCCTAGCAACTACAAGGTGGCTCACAACCATCCATAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCCTAGCAACTACAAGGTGGCTCACAACCATCCATAATGAGA  150

seq1  TCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGCACTCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGCACTCACAT  200

seq1  ATAATAAATAAATAAATAAATAAATTTTAGATAGAAAATATAAGGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAATAAATAAATAAATTTTAGATAGAAAATATAAGGACAGT  250

seq1  ATATAGTCTTAACTGCTAAGCCATCTCTCCTGCCTTGTTTTTATAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCTTAACTGCTAAGCCATCTCTCCTGCCTTGTTTTTATAATCAA  300

seq1  CTCTGTTTTTGGAAGCGTTTTTCTACAATAATCTCTGCATAATATTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTTGGAAGCGTTTTTCTACAATAATCTCTGCATAATATTGAAG  350

seq1  CCAGGTCACCTAAAAACAAACAAATACCAATAGACACCATGGGGGCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCACCTAAAAACAAACAAATACCAATAGACACCATGGGGGCTTGA  400

seq1  GAGCACTTAGTGCACTGGTAGAGGACTTGGGTTCCATTCCCAGCACCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTAGTGCACTGGTAGAGGACTTGGGTTCCATTCCCAGCACCCCA  450

seq1  CAACATTCTGTAACTCGTGGTCCAGGGGATCTGACACCTACTTCTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCTGTAACTCGTGGTCCAGGGGATCTGACACCTACTTCTGGCCT  500

seq1  CAGCAGGCACCAGACACACATGCAGGCAAAACACTCATGCACATAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCACCAGACACACATGCAGGCAAAACACTCATGCACATAAAAAG  550

seq1  TAATTTAAAACAAACCAAACAAAAAAACTAATTTAAAAACAAACAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAACAAACCAAACAAAAAAACTAATTTAAAAACAAACAGCCAG  600

seq1  GCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGG  650

seq1  TATATCTCTAAGTTTGAGGCCAGTGTCTGGTCTACAGAGTGAGTTCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTCTAAGTTTGAGGCCAGTGTCTGGTCTACAGAGTGAGTTCTAGG  700

seq1  ACAGCCGGGACTACACAGAAAAACCTTGTCTCAAAAACAAAACAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGGGACTACACAGAAAAACCTTGTCTCAAAAACAAAACAAAACAA  750

seq1  AATAAAACCCAAAACAAACAAACAAAACACCAACCAGAAGCTAAATGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCCAAAACAAACAAACAAAACACCAACCAGAAGCTAAATGACC  800

seq1  AAGTTTGGAAGCTTTAAACATGAGATTAAAAGAAGCCATGTTAGAAGACT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTTTGGAAGCTTTAAACATGAGATT-AAAGAAGCCATGTTAGAAGACT  849

seq1  GGTTGGCTTCTACAGACTCCAATTCTCTATGTCTAGTACAGTTTCTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTTCTACAGACTCCAATTCTCTATGTCTAGTACAGTTTCTTCAC  899

seq1  CTTCTGATCCTGCTTATGCAACTGGTAAAGGTGCCTTCCAGGTGACAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATCCTGCTTATGCAACTGGTAAAGGTGCCTTCCAGGTGACAAAC  949

seq1  GGCTTTGAGATGTTCACATAAACAGTATGTCCAGTTCTTTGCTCCCCCCC  1000
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GGCTTTGAGAT-TTCACAT-AACAGTATGTCCAGTTCTTTGCTCCCCCCC  997

seq1  CCCAAAAAAAAATCCAACAAAGCATCTTAGAGGACTGACTTAGGCAAAAA  1050
          |||||||||||||| |||||||||| ||||||||||||||||||||
seq2  ----AAAAAAAATCCAAC-AAGCATCTTA-AGGACTGACTTAGGCAAAAA  1041

seq1  TATTCTGTAGCTATGGTAAAATACTGTTTACGGAAGTGAACTTCCCCAAA  1100
      ||||||||||||| | |  ||||||||||||||||||| ||||| |  ||
seq2  TATTCTGTAGCTACGTT--AATACTGTTTACGGAAGTG-ACTTCTC--AA  1086

seq1  CATTAATTTTTAAATC-TTAGCCAAAATAATAAAAGACCGGTTGTGGGTT  1149
      |||    ||||||||| |||||  ||||||||||||| |||||||||| |
seq2  CAT---ATTTTAAATCTTTAGC--AAATAATAAAAGA-CGGTTGTGGG-T  1129

seq1  GTCCTGCTGTTGTTTGTATTCTGATGTTAATTCTGCT  1186
      |||| |||| ||||   |||| || ||||||||||||
seq2  GTCC-GCTG-TGTT--GATTC-GAGGTTAATTCTGCT  1161