BAC Information

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BAC

Clone NameB6Ng01-135C17
Chromosome13 (Build37)
Map Location 55,602,066 - 55,766,175
singlet/doubletdoublet
Overlap genePdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46
Upstream geneLOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1
Downstream geneB230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C17.bB6Ng01-135C17.g
ACCDH935278DH935279
length1,156232
definitionDH935278|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C17, 5' end.DH935279|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,765,010 - 55,766,175)(55,602,066 - 55,602,297)
sequence
gaattcagaaatccacctgcctctgccacccaagtgctaggattaaagtc
atgcgccaccacgcctggctgtaaaaggatattgtatccttcttttagaa
gaaaatctaatacagtttaaaatatgattcttagggctggagagatggct
cagcggttaagagcactgaatgctcttctcaaggtcctgagttcaattcc
caacaaccacatggtggctcacaaccatctgtaacgagatctgacctcct
cttctggagtgtctgaagacagctacagtgtacttacatataagaaataa
atcttaaaaaaaaaaaaaaaaaaaaagactcttaaagtcaccatgactgc
atgaagcagaccaaacatgaaaggatacagaatgcattacacatcatgca
gtacacaggataaggaattcatgatgttacaatgacaggtgaaggggaga
aatgcagagtaactgcggcttaagaggtacagtttctctttggatgatga
gaaagcaaggaagcagggatatgcttcagtggaaacttcttgctccataa
aacaaagacccaaactcaagtctctaatgcccatgtcaacagtcaggcat
gcctctttgatcctgtaaccctagtactagatgtgaagacaggtcaattc
agacagctcaatggccaaaaagcctagctggtgcagtgagagacaagacc
tactggcagctgtgagaagccaccgagagcagcctccattagctacaact
ggatgttgctgggccaggggctgactacctgattccttctacctccatta
cagacaacaaaagcattattattattctgagcaagctcaaggcaatgaca
tgctagtaggtaagtaatcgtcacctccgtgaagagacatgcaagggtac
gatgctctcatcaagtccttcagaagacatctgcgtgttcctgcttatcc
acaaatatatgacagatcctgactcctgatatggcctaaagctccagcat
ttcagaatttcttttcttcttcattcacatctgaaataccacatgtagca
gtaatgtagaaaaacaaaacacgtctagaacaaattcgtgttttattctt
cggagctttctgccttagtgattaggttaaagggacagcagaatcttaac
tggcag
ccacgtgcgtttgccttcctctcaaggccacttccacacttctgttcaag
tgtttactgaccactctcgacgctgatggacacagcgcttaagtcaaaca
gacctgcccttggctcatggcatccatgcccagggaagcaaggcaggcca
ggggatgaagatacggtgagtgaactgcagtgaggcctgatgggaagggt
agggactgagaaggtgtggggtggtggtggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55765010_55766175
seq2: B6Ng01-135C17.b_49_1204 (reverse)

seq1  CTGCCAGTTAAAAGTCTGCTG---CTTTTACTTAATCACTTTAAGGCGCA  47
      ||||||||||| | |||||||   |||| || |||||||  ||||  |||
seq2  CTGCCAGTTAAGATTCTGCTGTCCCTTTAACCTAATCAC--TAAG--GCA  46

seq1  GGAAGCTC--GAGATTAAACAACGATTTTGTTCTAGGACGTGTTTGTGTT  95
      | ||||||   ||| ||||  |||| ||||||||| ||||||||| ||||
seq2  GAAAGCTCCGAAGAATAAAACACGAATTTGTTCTA-GACGTGTTT-TGTT  94

seq1  TCT-TACATTAACTTGCTACATTGTGGTATTTTCAGATTGTGATTGAAGA  144
      | | |||||||   ||||||| ||||||| ||||||| ||||| ||||||
seq2  TTTCTACATTA--CTGCTACA-TGTGGTA-TTTCAGA-TGTGAATGAAGA  139

seq1  AGAAAAGAAATTCTTGAAATTGCTGGAGCTTTTAGGCCATTATCAGGAGT  194
      ||||||||||||| ||||| ||||||||| ||||||||| ||||||||||
seq2  AGAAAAGAAATTC-TGAAA-TGCTGGAGC-TTTAGGCCA-TATCAGGAGT  185

seq1  CAGGATCTGTCATTATATTTGTGGATAAGCAGGAACACGCAGATGGTCTT  244
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CAGGATCTGTCA-TATATTTGTGGATAAGCAGGAACACGCAGAT-GTCTT  233

seq1  CTGAAGGACTTGATGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGACTTGATGAGAGCATCGTACCCTTGCATGTCTCTTCACGGAGG  283

seq1  TGACGATTACTTACCTACTAGCATGTCATTGCCTTGAGCTTGCTCAGAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGATTACTTACCTACTAGCATGTCATTGCCTTGAGCTTGCTCAGAAT  333

seq1  AATAATAATGC-TTTGTTGTCTGTAATGGAGGTAGAAGGAATCAGGTAGT  393
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATGCTTTTGTTGTCTGTAATGGAGGTAGAAGGAATCAGGTAGT  383

seq1  CAGCCCCTGGCCCAGCAACATCCAGTTGTAGCTAATGGAGGCTGCTCTCG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCTGGCCCAGCAACATCCAGTTGTAGCTAATGGAGGCTGCTCTCG  433

seq1  GTGGCTTCTCACAGCTGCCAGTAGGTCTTGTCTCTCACTGCACCAGCTAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTCACAGCTGCCAGTAGGTCTTGTCTCTCACTGCACCAGCTAG  483

seq1  GCTTTTTGGCCATTGAGCTGTCTGAATTGACCTGTCTTCACATCTAGTAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGGCCATTGAGCTGTCTGAATTGACCTGTCTTCACATCTAGTAC  533

seq1  TAGGGTTACAGGATCAAAGAGGCATGCCTGACTGTTGACATGGGCATTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTACAGGATCAAAGAGGCATGCCTGACTGTTGACATGGGCATTAG  583

seq1  AGACTTGAGTTTGGGTCTTTGTTTTATGGAGCAAGAAGTTTCCACTGAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAGTTTGGGTCTTTGTTTTATGGAGCAAGAAGTTTCCACTGAAG  633

seq1  CATATCCCTGCTTCCTTGCTTTCTCATCATCCAAAGAGAAACTGTACCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCTGCTTCCTTGCTTTCTCATCATCCAAAGAGAAACTGTACCTC  683

seq1  TTAAGCCGCAGTTACTCTGCATTTCTCCCCTTCACCTGTCATTGTAACAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCGCAGTTACTCTGCATTTCTCCCCTTCACCTGTCATTGTAACAT  733

seq1  CATGAATTCCTTATCCTGTGTACTGCATGATGTGTAATGCATTCTGTATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTCCTTATCCTGTGTACTGCATGATGTGTAATGCATTCTGTATC  783

seq1  CTTTCATGTTTGGTCTGCTTCATGCAGTCATGGTGACTTTAAGAGTCTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTTTGGTCTGCTTCATGCAGTCATGGTGACTTTAAGAGTCTTT  833

seq1  TTTTTTTTTTTTTTTTTTAAGATTTATTTCTTATATGTAAGTACACTGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTAAGATTTATTTCTTATATGTAAGTACACTGTA  883

seq1  GCTGTCTTCAGACACTCCAGAAGAGGAGGTCAGATCTCGTTACAGATGGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACTCCAGAAGAGGAGGTCAGATCTCGTTACAGATGGT  933

seq1  TGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTTGAGAAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTTGAGAAGA  983

seq1  GCATTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTAAGAATCAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTAAGAATCAT  1033

seq1  ATTTTAAACTGTATTAGATTTTCTTCTAAAAGAAGGATACAATATCCTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACTGTATTAGATTTTCTTCTAAAAGAAGGATACAATATCCTTT  1083

seq1  TACAGCCAGGCGTGGTGGCGCATGACTTTAATCCTAGCACTTGGGTGGCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAGGCGTGGTGGCGCATGACTTTAATCCTAGCACTTGGGTGGCA  1133

seq1  GAGGCAGGTGGATTTCTGAATTC  1166
      |||||||||||||||||||||||
seq2  GAGGCAGGTGGATTTCTGAATTC  1156

seq1: chr13_55602066_55602297
seq2: B6Ng01-135C17.g_77_308

seq1  CCACGTGCGTTTGCCTTCCTCTCAAGGCCACTTCCACACTTCTGTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGCGTTTGCCTTCCTCTCAAGGCCACTTCCACACTTCTGTTCAAG  50

seq1  TGTTTACTGACCACTCTCGACGCTGATGGACACAGCGCTTAAGTCAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGACCACTCTCGACGCTGATGGACACAGCGCTTAAGTCAAACA  100

seq1  GACCTGCCCTTGGCTCATGGCATCCATGCCCAGGGAAGCAAGGCAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCCCTTGGCTCATGGCATCCATGCCCAGGGAAGCAAGGCAGGCCA  150

seq1  GGGGATGAAGATACGGTGAGTGAACTGCAGTGAGGCCTGATGGGAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGAAGATACGGTGAGTGAACTGCAGTGAGGCCTGATGGGAAGGGT  200

seq1  AGGGACTGAGAAGGTGTGGGGTGGTGGTGGTA  232
      ||||||||||||||||||||||||||||||||
seq2  AGGGACTGAGAAGGTGTGGGGTGGTGGTGGTA  232