BAC Information

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BAC

Clone NameB6Ng01-135K13
Chromosome13 (Build37)
Map Location 60,644,253 - 60,854,615
singlet/doubletdoublet
Overlap geneDapk1
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneLOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135K13.bB6Ng01-135K13.g
ACCDH935640DH935641
length1,088575
definitionDH935640|Mus musculus domesticus DNA, BAC clone: B6Ng01-135K13, 5' end.DH935641|Mus musculus domesticus DNA, BAC clone: B6Ng01-135K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,853,524 - 60,854,615)(60,644,253 - 60,644,832)
sequence
gaattcctgtccttacaagctccctgccatgatgccacacagcaggaagt
taagtcatccaggtgatgtcacaaggactggggtttagacttctctcctc
ctaagctaaatacatctttttgttattacctacccaacttcaggcatatc
gttacagcaccaaacattactaactgattctaagtttaaaaagttgtact
tttatactcctttataagagaaacaaaggacttgtacgatcacactgcta
ggaaaagcactctgatcttttctattcttcctgtccatcccatcctgacc
cattaaggagctggatgttaacagaagtaatttccgaactcagcaggtgt
ctacaacttacatgttgggaaaggaatatggatgacagcagaagtctgtg
tggggtgctgggtgagaagaggagagtgggctgtggcctttgaccacggt
ccctctgcatctagagaggcttgttttgagcatactcattgttctgatgg
aaatgaaaaactcaacaaaggatcaatcagtgatgaagattccttgaacc
accacatgccagtccacccagcatggccacatatccttggccccatcatc
tcatctgactcatccccaagtccagatgctcaacccatgcaccaggatgc
tatccttacctgttcccaccaggaggccgccctcacctgctcccaccagc
aggctaccctcacctgtttccagcagcatgccactgtcacctgctcccac
cagcaggctgccctcacctattcccaccagcaggccaccctcacctgttc
ccaccagcacccagccctcacctgttcccaccaggaggctgcccttacct
gctgccaccagcaggccgccctcacctgttcccaccagcagccagccctc
acctgtttctgatctctttcagcaaggatgtatccttgtcatatccaaac
tcgcctccagcaggccgagggatgtcatgatgtcagcattgtgttgccac
caggacactcgggagggttcttcagcttgcctcaaatgcttgaggagaca
attacctgtgaagattctcgtctccttattggctgttg
gaattcaagcgtagtctgagagacacagcaagaccctatctaaacaaaca
aacaaacaaacacgggttggtgaaatgtttcagtacgtaaaggtatttgt
tgtcaaggctgaaggcccaagttcaatcccagggactacatagaagaaga
gaaccaactcctacaagttgtcctctgacctttacacaaacacacacata
cacacacacattaataatgaaaagtgattttttaagccaagccaaacatt
taggaaagttagctccaagtaaacagtattgatgtgttgctgttcaatcc
ccagtgaacactgggactgttttctgcaccccacttttccataccagcaa
cccctgaatcacctgtacacacactctgttaagaaacgagtctgcctatt
accaggtcttccaaataatccctgtgcagacctcagggaaagaatgatgc
ttcccttttggcatgacgctagcctccatgtggcatgccataagggaagg
catccaaagcctcaggaataaacctggcagcacctagagagaattggagg
ggtgcctttcccctaagatcaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60853524_60854615
seq2: B6Ng01-135K13.b_43_1130 (reverse)

seq1  CAACAGCCAGATAGGAGACGAGACTC-TCACAGGGTACACTGTCTCCCTC  49
      |||||||||   ||||||||||| || ||||| |||| | |||||||   
seq2  CAACAGCCAATAAGGAGACGAGAATCTTCACA-GGTA-ATTGTCTCCTCA  48

seq1  AGCATTTGGAGGCAAGCTGAAGAACCCTCTCCGAGTTGTCCTGGTGGCAA  99
      ||||||| ||||||||||||||||||||| ||||| ||||||||||||||
seq2  AGCATTT-GAGGCAAGCTGAAGAACCCTC-CCGAG-TGTCCTGGTGGCAA  95

seq1  CAC-ATGCTGACATCATGAACATCCCTCGGCCTGCTGGAGGCGAGTTTGG  148
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACAATGCTGACATCATG-ACATCCCTCGGCCTGCTGGAGGCGAGTTTGG  144

seq1  ATATGACAAGGATACATCCTTGCTGAAAGAGATCAGAAACAGGTGAGGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAAGGATACATCCTTGCTGAAAGAGATCAGAAACAGGTGAGGGC  194

seq1  TGGCTGCTGGTGGGAACAGGTGAGGGCGGCCTGCTGGTGGCAGCAGGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGGTGGGAACAGGTGAGGGCGGCCTGCTGGTGGCAGCAGGTAA  244

seq1  GGGCAGCCTCCTGGTGGGAACAGGTGAGGGCTGGGTGCTGGTGGGAACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCTCCTGGTGGGAACAGGTGAGGGCTGGGTGCTGGTGGGAACAG  294

seq1  GTGAGGGTGGCCTGCTGGTGGGAATAGGTGAGGGCAGCCTGCTGGTGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTGGCCTGCTGGTGGGAATAGGTGAGGGCAGCCTGCTGGTGGGA  344

seq1  GCAGGTGACAGTGGCATGCTGCTGGAAACAGGTGAGGGTAGCCTGCTGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGACAGTGGCATGCTGCTGGAAACAGGTGAGGGTAGCCTGCTGGT  394

seq1  GGGAGCAGGTGAGGGCGGCCTCCTGGTGGGAACAGGTAAGGATAGCATCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGTGAGGGCGGCCTCCTGGTGGGAACAGGTAAGGATAGCATCC  444

seq1  TGGTGCATGGGTTGAGCATCTGGACTTGGGGATGAGTCAGATGAGATGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGGGTTGAGCATCTGGACTTGGGGATGAGTCAGATGAGATGAT  494

seq1  GGGGCCAAGGATATGTGGCCATGCTGGGTGGACTGGCATGTGGTGGTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAAGGATATGTGGCCATGCTGGGTGGACTGGCATGTGGTGGTTCA  544

seq1  AGGAATCTTCATCACTGATTGATCCTTTGTTGAGTTTTTCATTTCCATCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTCATCACTGATTGATCCTTTGTTGAGTTTTTCATTTCCATCA  594

seq1  GAACAATGAGTATGCTCAAAACAAGCCTCTCTAGATGCAGAGGGACCGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGAGTATGCTCAAAACAAGCCTCTCTAGATGCAGAGGGACCGTG  644

seq1  GTCAAAGGCCACAGCCCACTCTCCTCTTCTCACCCAGCACCCCACACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGGCCACAGCCCACTCTCCTCTTCTCACCCAGCACCCCACACAGA  694

seq1  CTTCTGCTGTCATCCATATTCCTTTCCCAACATGTAAGTTGTAGACACCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGTCATCCATATTCCTTTCCCAACATGTAAGTTGTAGACACCT  744

seq1  GCTGAGTTCGGAAATTACTTCTGTTAACATCCAGCTCCTTAATGGGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTCGGAAATTACTTCTGTTAACATCCAGCTCCTTAATGGGTCAG  794

seq1  GATGGGATGGACAGGAAGAATAGAAAAGATCAGAGTGCTTTTCCTAGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATGGACAGGAAGAATAGAAAAGATCAGAGTGCTTTTCCTAGCAG  844

seq1  TGTGATCGTACAAGTCCTTTGTTTCTCTTATAAAGGAGTATAAAAGTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCGTACAAGTCCTTTGTTTCTCTTATAAAGGAGTATAAAAGTACA  894

seq1  ACTTTTTAAACTTAGAATCAGTTAGTAATGTTTGGTGCTGTAACGATATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAACTTAGAATCAGTTAGTAATGTTTGGTGCTGTAACGATATG  944

seq1  CCTGAAGTTGGGTAGGTAATAACAAAAAGATGTATTTAGCTTAGGAGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTTGGGTAGGTAATAACAAAAAGATGTATTTAGCTTAGGAGGAG  994

seq1  AGAAGTCTAAACCCCAGTCCTTGTGACATCACCTGGATGACTTAACTTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTAAACCCCAGTCCTTGTGACATCACCTGGATGACTTAACTTCC  1044

seq1  TGCTGTGTGGCATCATGGCAGGGAGCTTGTAAGGACAGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGGCATCATGGCAGGGAGCTTGTAAGGACAGGAATTC  1088

seq1: chr13_60644253_60644832
seq2: B6Ng01-135K13.g_67_641

seq1  GAATTCAAGCGTAGTCTGAGAGACACAGCAAGACCCTATCTAAACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCGTAGTCTGAGAGACACAGCAAGACCCTATCTAAACAAACA  50

seq1  AACAAACAAACACGGGTTGGTGAAATGTTTCAGTACGTAAAGGTATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACACGGGTTGGTGAAATGTTTCAGTACGTAAAGGTATTTGT  100

seq1  TGTCAAGGCTGAAGGCCCAAGTTCAATCCCAGGGACTACATAGAAGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGGCTGAAGGCCCAAGTTCAATCCCAGGGACTACATAGAAGAAGA  150

seq1  GAACCAACTCCTACAAGTTGTCCTCTGACCTTTACACAAACACACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACTCCTACAAGTTGTCCTCTGACCTTTACACAAACACACACATA  200

seq1  CACACACACATTAATAATGAAAAGTGATTTTTTAAGCCAAGCCAAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATTAATAATGAAAAGTGATTTTTTAAGCCAAGCCAAACATT  250

seq1  TAGGAAAGTTAGCTCCAAGTAAACAGTATTGATGTGTTGCTGTTCAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGTTAGCTCCAAGTAAACAGTATTGATGTGTTGCTGTTCAATCC  300

seq1  CCAGTGAACACTGGGACTGTTTTCTGCACCCCAC-TTTCCATACCAGCAA  349
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCAGTGAACACTGGGACTGTTTTCTGCACCCCACTTTTCCATACCAGCAA  350

seq1  CCCCTGAATCACCTGTACACACACTCTGTTAAGAAACGAGTCTGCCTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAATCACCTGTACACACACTCTGTTAAGAAACGAGTCTGCCTATT  400

seq1  ACCAGGTCTTCCAAATAATCCCTGTGCAGACCTCAGGGAAAGAATGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCTTCCAAATAATCCCTGTGCAGACCTCAGGGAAAGAATGATGC  450

seq1  TTCCCTTATGGCATGACGCTAGCCTCGATGTGGCCATGCCATAAGGGAAG  499
      ||||||| |||||||||||||||||| |||||| ||||||||||||||||
seq2  TTCCCTTTTGGCATGACGCTAGCCTCCATGTGG-CATGCCATAAGGGAAG  499

seq1  GCATCCAAAGCCTCAGGAATAAAGCCTGGCAGCAGCTTAGAGAGAATTGG  549
      ||||||||||||||||||||||| |||||||||| | |||||||||||||
seq2  GCATCCAAAGCCTCAGGAATAAA-CCTGGCAGCA-CCTAGAGAGAATTGG  547

seq1  AGGTGCTGCCTTTCCTCCTAAGGATCAGGAA  580
      ||| | ||||||||| ||||| |||||||||
seq2  AGG-GGTGCCTTTCC-CCTAA-GATCAGGAA  575