BAC Information

Click to search

BAC

Clone NameB6Ng01-135P20
Chromosome13 (Build37)
Map Location 19,146,882 - 19,148,054
singlet/doubletsinglet
Overlap geneAmph
Upstream gene4930448F12Rik, Pou6f2, Vps41
Downstream geneLOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P20.bB6Ng01-135P20.g
ACCDH935888DH935889
length1,2171,156
definitionDH935888|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P20, 5' end.DH935889|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgttcttttcaaaacttttatcatgaagggatgttgaattttg
tcaaatgctttctctcagcaactaatgaaatgatcatgtaatttttttct
ttgagtttgtttatatagtggattgcattgatgtatttctgtatattgaa
ccatctctgcattcctagaatgaagcctatttgatcatgagggatgattg
ttttgatgtgttcttagatttggtttgtgagagttttattgagtattttt
acatcgatatttataagggaaatggtctgaagttgtctttctttgttggg
tctttgtgctttaagtataagcaaacatattgtgacttcatagaatgaat
tgggtagtgttccttctgtttttattctgtgaaatagtttgtggagaata
ttaggtgttctttgaaggtctgatagaactttgcactaaacccatcctgg
gcttttttttatttttggttgggactgcttctatttcttgaggtgttata
ggtccatttagatcattaatctgatcctgattaaattttgatacctggta
acagactagaaaaactgttcatttcatccagatttttcagttttgttgag
tatgggcttttctagaaggatctgatgatctttttggatttcctcagttt
ctattgttatgtctcccttttcatttctaattttgttagttaggatactg
tctctgtgccctctgggtagtctggctaagggtttgtctatctgattgat
ttcctcaaagaaccaacttctgcttttattgattctttgtaaagttcttt
ctgtttctagttggtagatttcattccggagtttgattatttcctggagg
ctattcttcttgggtgtagttgcttctttttgctttcgaactttctgatg
tgctgtcaagtgctagtgtatgctctctccagtttctttttggaggcact
cagagctatgagtttcctctcagcactgctttcattgtgtgccataagtt
tggacatgccatcttcatttcattaaaatttaaatggtctttaattcttc
ttatatctccccttaccaagtaatatgagtcgaacatgtcagctttcaat
gttatatgggccttcagtgttttgtgtctattgagaaaccgactttagtc
atgggaatctaaggggctagcatatcaacctctgatctgtgagatgcggt
tgttgggggccaaatat
gaattcataagaaaagtttcttcagaaagttgtggccaaaggacatctcc
cacatagaacaagcactcagtggtttggggaaacaataagaaaccatagg
ggtgatggcttttcatctaaggaaggctagtaaagaaacacaggtagagg
aatgtgttctatttactttgcacttttctagaatcctctttaccagaaat
ttctctgtgtttaaaaatatatgtcactatctgcatatattttaatctct
cttcttatgttggtcccttgacctcctcctaaatgtgagtctatgtgact
tggaacaaatcttacttgtttgatcttgacttcatttggactcctgctct
gttggacacgaattacttgtcattggaattagtttgggtttccttttaca
ttcagaacagtaaaactttctttggccaaacccagaaattaaatcacagt
tacccttctagtatttgacagaactcagcagccaaacaaatgccttttct
ctttagggatcatgatagggagacatttgactccagacactctgctataa
tcaaatgagaaaaggactctggagcagtgagcagggttgtggtcagtgtg
tctggagggtcccttggggactggaccacttctctccaagttctttctac
aatgtccagtgcacctgactccttgtgacttcctactctcctccggtcct
ccacgttcacatggaagtcccacattttaaaaagtctgttcctaaactgc
cattgacctgatgttccccagacttttcagagtgtgttgctctgttcacg
tcactaatatattactttttcactttttgcatgacagctatttttctgtg
tattaatgtctgttagactgtcatacttctaaaaaagattttgagcctca
gtcacttaaagaactctctgttgctgccatcacattccaagtacttaaca
gtgcatcccagttttgattcacctccttgagctgtgtttctgtttgcaca
ttatcacctcagttctctcttgctgttcactgttttcttctcattctaag
tttgtcatcgaatacccgtaaggagaatgtttacatgggtggatcaagtg
acacatggaatccaaaggtacctcaactattggatcgaaggatttctctg
gcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19146882_19148054
seq2: B6Ng01-135P20.g_69_1224

seq1  GAATTCATAAGAAAAGTTTCTTCAGAAAGTTGTGGCCAAAGGACATCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGAAAAGTTTCTTCAGAAAGTTGTGGCCAAAGGACATCTCC  50

seq1  CACATAGAACAAGCACTCAGTGGTTTGGGGAAACAATAAGAAACCATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAACAAGCACTCAGTGGTTTGGGGAAACAATAAGAAACCATAGG  100

seq1  GGTGATGGCTTTTCATCTAAGGAAGGCTAGTAAAGAAACACAGGTAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGCTTTTCATCTAAGGAAGGCTAGTAAAGAAACACAGGTAGAGG  150

seq1  AATGTGTTCTATTTACTTTGCACTTTTCTAGAATCCTCTTTACCAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTCTATTTACTTTGCACTTTTCTAGAATCCTCTTTACCAGAAAT  200

seq1  TTCTCTGTGTTTAAAAATATATGTCACTATCTGCATATATTTTAATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTTTAAAAATATATGTCACTATCTGCATATATTTTAATCTCT  250

seq1  CTTCTTATGTTGGTCCCTTGACCTCCTCCTAAATGTGAGTCTATGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATGTTGGTCCCTTGACCTCCTCCTAAATGTGAGTCTATGTGACT  300

seq1  TGGAACAAATCTTACTTGTTTGATCTTGACTTCATTTGGACTCCTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAATCTTACTTGTTTGATCTTGACTTCATTTGGACTCCTGCTCT  350

seq1  GTTGGACACGAATTACTTGTCATTGGAATTAGTTTGGGTTTCCTTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACACGAATTACTTGTCATTGGAATTAGTTTGGGTTTCCTTTTACA  400

seq1  TTCAGAACAGTAAAACTTTCTTTGGCCAAACCCAGAAATTAAATCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACAGTAAAACTTTCTTTGGCCAAACCCAGAAATTAAATCACAGT  450

seq1  TACCCTTCTAGTATTTGACAGAACTCAGCAGCCAAACAAATGCCTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTCTAGTATTTGACAGAACTCAGCAGCCAAACAAATGCCTTTTCT  500

seq1  CTTTAGGGATCATGATAGGGAGACATTTGACTCCAGACACTCTGCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGATCATGATAGGGAGACATTTGACTCCAGACACTCTGCTATAA  550

seq1  TCAAATGAGAAAAGGACTCTGGAGCAGTGAGCAGGGTTGTGGTCAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGAGAAAAGGACTCTGGAGCAGTGAGCAGGGTTGTGGTCAGTGTG  600

seq1  TCTGGAGGGTCCCTTGGGGACTGGACCACTTCTCTCCAAGTTCTTTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGGTCCCTTGGGGACTGGACCACTTCTCTCCAAGTTCTTTCTAC  650

seq1  AATGTCCAGTGCACCTGACTCCTTGTGACTTCCTACTCTCCTCCGGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAGTGCACCTGACTCCTTGTGACTTCCTACTCTCCTCCGGTCCT  700

seq1  CCACGTTCACATGGAAGTCCCACATTTTAAAAAGTCTGTTCCTAAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTCACATGGAAGTCCCACATTTTAAAAAGTCTGTTCCTAAACTGC  750

seq1  CATTGACCTGATGTTCCCCAGACTTTTCAGAGTGTGTTGCTCTGTTCACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACCTGATGTTCCCCAGACTTTTCAGAGTGTGTTGCTCTGTTCACG  800

seq1  TCACTAATATATTACTTTTTCACTTTTTGCATGACAGCTATTTTTCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATATATTACTTTTTCACTTTTTGCATGACAGCTATTTTTCTGTG  850

seq1  TATTAATGTCTGTTAGACTGTCATACTTCTAAAAAAAGATTTTGAGCCTC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATTAATGTCTGTTAGACTGTCATACTTCT-AAAAAAGATTTTGAGCCTC  899

seq1  AGTCACTTAAAGAAACTCTCTGTTGCTGCCATCACATTCCAAGTACTTAA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTAAAG-AACTCTCTGTTGCTGCCATCACATTCCAAGTACTTAA  948

seq1  CAAGTGCATCCCAGTTTTGATTCACCTCCTTGGAGCCTGTGTTTCTTGTT  1000
      | ||||||||||||||||||||||||||||| ||| ||||||||||   |
seq2  C-AGTGCATCCCAGTTTTGATTCACCTCCTT-GAG-CTGTGTTTCT--GT  993

seq1  TTGCACATTATCA-CTCAGTTCCTCTCTTTGCTG-TCACTGTTTTCTTCC  1048
      ||||||||||||| ||||||| ||||| |||||| |||||||||||||| 
seq2  TTGCACATTATCACCTCAGTT-CTCTC-TTGCTGTTCACTGTTTTCTTC-  1040

seq1  TTCATTCTAAGTTTTGTCATCAAAATACCCGT-AGGAGAATGTTTACATG  1097
       |||||||||| |||||||||  ||||||||| |||||||||||||||||
seq2  -TCATTCTAAG-TTTGTCATC-GAATACCCGTAAGGAGAATGTTTACATG  1087

seq1  GTTTGGGATCCAAGTGGACACATGGGATCCAAAGTTACCTTACAACTA-T  1146
      | |  |||| ||||| ||||||||| |||||||| |||||  |||||| |
seq2  GGT--GGAT-CAAGT-GACACATGGAATCCAAAGGTACCT--CAACTATT  1131

seq1  GGATCCCAAAAAGATCT-GCTGGCACAC  1173
      |||||    || ||| |  |||||||||
seq2  GGATC---GAAGGATTTCTCTGGCACAC  1156