BAC Information

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BAC

Clone NameB6Ng01-136I05
Chromosome13 (Build37)
Map Location 54,534,105 - 54,639,729
singlet/doubletdoublet
Overlap geneThoc3, LOC100040543, 4732471D19Rik
Upstream geneMsx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2
Downstream gene4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I05.bB6Ng01-136I05.g
ACCDH936266DH936267
length1,0891,092
definitionDH936266|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I05, 5' end.DH936267|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,534,105 - 54,535,207)(54,638,634 - 54,639,729)
sequence
gaattcttagttcacagatgcagtcaaactcggaattaactgataagact
tttccttaaggggggaaaaagaaccttttacctcttgaaaaatatcagtt
gataggctggcacgggccatgctgtcccaatgttagatgtccatcccttt
atgagattgaagtgagggagttacaatctttctttgggtctggtgtgtcc
aaggtctttccctggtctcattgatataattttagtgcacccctatatac
cctcacagtttgaattcactccaataaattgatagggtggctccctttct
gttcccatttatcatctgtgcaggagagagctgcctagcagatggtgtgg
tgtctgggtctacccagggctacagtcatccttctccctcaagatggagt
caaagctgcttgtcaaatggaatctctagtctgtggtctgggaaactagt
tttattcaatacggaatcacttagagtcgagcttatcctagtatcaacac
ttctcttttctatggaagataaagagggccatttgtcttcgcttactcgt
taaaaccatgcggctatctcccttcatctggactctggttaaatgactaa
cggagaagcctctctgaccatgtgatacacggtcagcctcatccactgga
caccccgtcctcctatctagtccttcatagcacttgtcaaacctctgcat
actctttacctatttactgcctttaggccttcacaaaaataaaagttagt
gactgcggggactgtcattaactttgtttaagcgttgtaatgtcttcagt
accttgaaactggctgaatcgtatgccaggaatccagacgtaactgtcaa
gtaagcgaatcccacgttatagatgtggaaatacactaacgagcaataga
accgtttcccctgtgaagaccgtatgagtttgaccctagaaatattctct
tatctagaaacccacataggaagctgagccacgtgctttggggtcagaag
gactctgctaaatcagcagtgctttgccagttgggtcactgacccgaaag
tcctctgagagtggggtactctgcaaacgatggaccgca
gaattccaggacagccagggctacacagagaaaccatgtctcaaaaacca
aaaacaaataaagacccaaacaaccaaaccctacccccttgccaaaggca
attaacaggaaaaacaggtggtatggacaaaattagaagacaattagaaa
agataagaaatgtgtgggtacagacattgtttttcccccgagacagggtt
tctctgtgtagccctgactatcctggaattctgtagaccaggctggcctt
gaactcagaaatcggcttgcctctgcctccccagtgctgggattaaaggc
gtgcgccacaaagtagtggatgacagctatagcggccggggctcccgacc
actgagccttctctccagcactgctgctcattcgtaacagcacttctggc
agctagaagacaatttcttcaaagctttgcataaaagttattcttaaata
tgtaaactaaactaagaatatttacctacttattagtcaaaacatgagag
gaagaaaggtattttcaaacatgacttctcaaaattcttcctttatatat
atatatattctttggaataaggaatactccttgttactcaggagtccaca
tggtcaattcagagaagtttcctgtgattctccacagtgttgggagttac
cccactcatggtatttagtaataagaaagatctcatccccttagtctctg
ggtttatctagagcaactgagaagcacctagcaggcccgtgtctgagaga
ggacttcctaaaataatcaggcctcataagcatccaactttttctctaag
gaatggtccaatctactgccatacaaagcctgaataggtaactgagatag
taagacagtggaagggcctggctggagaagtggctcactggcatgtgcct
tggggctgttcactgctttgcccctatcctcttagttcttttgcttctgg
ctgcttctggcatgagaccgaagtcttctgaatctgtgaacttaaatagt
ctctctctccttgtcacttggtcttctcacaggtgcagtgaacatcagct
ggcacactgacacactgggctttacttgttcaactagtatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54534105_54535207
seq2: B6Ng01-136I05.b_49_1137

seq1  GAATTCTTAGTTCACAGATGCAGTCAAACTCGGAATTAACTGATAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTCACAGATGCAGTCAAACTCGGAATTAACTGATAAGACT  50

seq1  TTTCCTTAAGGGGGGAAAAAGAACCTTTTACCTCTTGAAAAATATCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAGGGGGGAAAAAGAACCTTTTACCTCTTGAAAAATATCAGTT  100

seq1  GATAGGCTGGCACGGGCCATGCTGTCCCAATGTTAGATGTCCATCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCTGGCACGGGCCATGCTGTCCCAATGTTAGATGTCCATCCCTTT  150

seq1  ATGAGATTGAAGTGAGGGAGTTACAATCTTTCTTTGGGTCTGGTGTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTGAAGTGAGGGAGTTACAATCTTTCTTTGGGTCTGGTGTGTCC  200

seq1  AAGGTCTTTCCCTGGTCTCATTGATATAATTTTAGTGCACCCCTATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTCCCTGGTCTCATTGATATAATTTTAGTGCACCCCTATATAC  250

seq1  CCTCACAGTTTGAATTCACTCCAATAAATTGATAGGGTGGCTCCCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGTTTGAATTCACTCCAATAAATTGATAGGGTGGCTCCCTTTCT  300

seq1  GTTCCCATTTATCATCTGTGCAGGAGAGAGCTGCCTAGCAGATGGTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATTTATCATCTGTGCAGGAGAGAGCTGCCTAGCAGATGGTGTGG  350

seq1  TGTCTGGGTCTACCCAGGGCTACAGTCATCCTTCTCCCTCAAGATGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGTCTACCCAGGGCTACAGTCATCCTTCTCCCTCAAGATGGAGT  400

seq1  CAAAGCTGCTTGTCAAATGGAATCTCTAGTCTGTGGTCTGGGAAACTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGCTTGTCAAATGGAATCTCTAGTCTGTGGTCTGGGAAACTAGT  450

seq1  TTTATTCAATACGGAATCACTTAGAGTCGAGCTTATCCTAGTATCAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAATACGGAATCACTTAGAGTCGAGCTTATCCTAGTATCAACAC  500

seq1  TTCTCTTTTCTATGGAAGATAAAGAGGGCCATTTGTCTTCGCTTACTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTCTATGGAAGATAAAGAGGGCCATTTGTCTTCGCTTACTCGT  550

seq1  TAAAACCATGCGGCTATCTCCCTTCATCTGGACTCTGGTTAAATGACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATGCGGCTATCTCCCTTCATCTGGACTCTGGTTAAATGACTAA  600

seq1  CGGAGAAGCCTCTCTGACCATGTGATACACGGTCAGCCTCATCCACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAAGCCTCTCTGACCATGTGATACACGGTCAGCCTCATCCACTGGA  650

seq1  CACCCCGTCCTCCTATCTAGTCCTTCATAGCACTTGTCAAACCTCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCGTCCTCCTATCTAGTCCTTCATAGCACTTGTCAAACCTCTGCAT  700

seq1  ACTCTTTACCTATTTACTGCCTTTAGGCCTTCACAAAAATAAAAGTTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTACCTATTTACTGCCTTTAGGCCTTCACAAAAATAAAAGTTAGT  750

seq1  GACTGCGGGGACTGTCATTAACTTTGTTTAAGGCGTTGTAATGTCTTCAG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACTGCGGGGACTGTCATTAACTTTGTTTAA-GCGTTGTAATGTCTTCAG  799

seq1  TACCTTGAAACTGGCTGAATCGTATGCCAGGAATCCAGACGGTAACTGTC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACCTTGAAACTGGCTGAATCGTATGCCAGGAATCCAGAC-GTAACTGTC  848

seq1  AAGTAAGCGAATCCCACGTTATAGATGTGGAAATACACTAACGAGCAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCGAATCCCACGTTATAGATGTGGAAATACACTAACGAGCAATA  898

seq1  GAACCGTTTCCCCTGTGAAGACCGTATGAGTTTGACCCTAAGAAATATTC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAACCGTTTCCCCTGTGAAGACCGTATGAGTTTGACCCT-AGAAATATTC  947

seq1  TCTTATCTAGAAACCCACATAGGAAGCTGAGCCACGGTGGCTTTGGGGTC  1000
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  TCTTATCTAGAAACCCACATAGGAAGCTGAGCCACG--TGCTTTGGGGTC  995

seq1  AGAAAGGACTCTGCTTAAATCAGCAGTGCTTTGCCAAGTTGGGGTCACTG  1050
      || ||||||||||| |||||||||||||||||||| |||| |||||||||
seq2  AG-AAGGACTCTGC-TAAATCAGCAGTGCTTTGCC-AGTT-GGGTCACTG  1041

seq1  ACCCGAAAGTCCTCTGAGAGTTTGGGGTACTCTGCAAAACGGAATGGACC  1100
      ||||||||||||||||||||  ||||||||||||| |||||  |||||||
seq2  ACCCGAAAGTCCTCTGAGAG--TGGGGTACTCTGC-AAACG--ATGGACC  1086

seq1  GCA  1103
      |||
seq2  GCA  1089

seq1: chr13_54638634_54639729
seq2: B6Ng01-136I05.g_69_1160 (reverse)

seq1  AGATTCTAGTTGTAACAAGTAAAGCCCAGTGTGTCAGTGTGTCAGCTGAT  50
      |||| ||||||| |||||||||||||||||||||||||||| ||||||||
seq2  AGATACTAGTTG-AACAAGTAAAGCCCAGTGTGTCAGTGTGCCAGCTGAT  49

seq1  GGTCACTGGCACCTGTGAGAAGA-CAAGTGACAGAGAGAGAGAGGACTTA  99
      | ||||| ||||||||||||||| |||||||||  |||||||| ||| ||
seq2  GTTCACT-GCACCTGTGAGAAGACCAAGTGACAAGGAGAGAGA-GAC-TA  96

seq1  TTTAAGTTCACAGATTCAG-AGACTTCGGTCTTCATGGCAGAAGCAGCCA  148
      ||||||||||||||||||| ||||||||||| ||||| ||||||||||||
seq2  TTTAAGTTCACAGATTCAGAAGACTTCGGTC-TCATGCCAGAAGCAGCCA  145

seq1  GGAAGCAAAGGAACTAAGAGGATAGGGGCAAAGCAGTGAACAGCCCCAAG  198
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -GAAGCAAAAGAACTAAGAGGATAGGGGCAAAGCAGTGAACAGCCCCAAG  194

seq1  GCCACATGCCAGTGAGCCACTTCTCCAGCCAGGCCCTTCCACTGTCTTAC  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CACATGCCAGTGAGCCACTTCTCCAGCCAGGCCCTTCCACTGTCTTAC  243

seq1  TATCTCAGTTACCTATTCAGGCTTTGTATGGCAGTAGATTGGACCATTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGTTACCTATTCAGGCTTTGTATGGCAGTAGATTGGACCATTCC  293

seq1  TTAGAG-AAAAGTTGGATGCTTATGAGGCCTGATTATTTTAGGAAGTCCT  347
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAAAGTTGGATGCTTATGAGGCCTGATTATTTTAGGAAGTCCT  343

seq1  CTCTCAGACACGGGCCTGCTAGGTGCTTCTCAGTTGCTCTAGATAAACCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGACACGGGCCTGCTAGGTGCTTCTCAGTTGCTCTAGATAAACCC  393

seq1  AGAGACTAAGGGGATGAGATCTTTCTTATTACTAAATACCATGAGTGGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTAAGGGGATGAGATCTTTCTTATTACTAAATACCATGAGTGGGG  443

seq1  TAACTCCCAACACTGTGGAGAATCACAGGAAACTTCTCTGAATTGACCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCCAACACTGTGGAGAATCACAGGAAACTTCTCTGAATTGACCAT  493

seq1  GTGGACTCCTGAGTAACAAGGAGTATTCCTTATTCCAAAGAATATATATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTCCTGAGTAACAAGGAGTATTCCTTATTCCAAAGAATATATATA  543

seq1  TATATAAAGGAAGAATTTTGAGAAGTCATGTTTGAAAATACCTTTCTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAGGAAGAATTTTGAGAAGTCATGTTTGAAAATACCTTTCTTCC  593

seq1  TCTCATGTTTTGACTAATAAGTAGGTAAATATTCTTAGTTTAGTTTACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTTTTGACTAATAAGTAGGTAAATATTCTTAGTTTAGTTTACAT  643

seq1  ATTTAAGAATAACTTTTATGCAAAGCTTTGAAGAAATTGTCTTCTAGCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAATAACTTTTATGCAAAGCTTTGAAGAAATTGTCTTCTAGCTG  693

seq1  CCAGAAGTGCTGTTACGAATGAGCAGCAGTGCTGGAGAGAAGGCTCAGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTGCTGTTACGAATGAGCAGCAGTGCTGGAGAGAAGGCTCAGTG  743

seq1  GTCGGGAGCCCCGGCCGCTATAGCTGTCATCCACTACTTTGTGGCGCACG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGAGCCCCGGCCGCTATAGCTGTCATCCACTACTTTGTGGCGCACG  793

seq1  CCTTTAATCCCAGCACTGGGGAGGCAGAGGCAAGCCGATTTCTGAGTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTGGGGAGGCAGAGGCAAGCCGATTTCTGAGTTCA  843

seq1  AGGCCAGCCTGGTCTACAGAATTCCAGGATAGTCAGGGCTACACAGAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAGAATTCCAGGATAGTCAGGGCTACACAGAGAA  893

seq1  ACCCTGTCTCGGGGGAAAAACAATGTCTGTACCCACACATTTCTTATCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGGGGGAAAAACAATGTCTGTACCCACACATTTCTTATCTT  943

seq1  TTCTAATTGTCTTCTAATTTTGTCCATACCACCTGTTTTTCCTGTTAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTGTCTTCTAATTTTGTCCATACCACCTGTTTTTCCTGTTAATT  993

seq1  GCCTTTGGCAAGGGGGTAGGGTTTGGTTGTTTGGGTCTTTATTTGTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGCAAGGGGGTAGGGTTTGGTTGTTTGGGTCTTTATTTGTTTTT  1043

seq1  GGTTTTTGAGACATGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGAGACATGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1092