BAC Information

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BAC

Clone NameB6Ng01-136J01
Chromosome13 (Build37)
Map Location 87,261,278 - 87,262,397
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136J01.bB6Ng01-136J01.g
ACCDH936306DH936307
length7631,095
definitionDH936306|Mus musculus domesticus DNA, BAC clone: B6Ng01-136J01, 5' end.DH936307|Mus musculus domesticus DNA, BAC clone: B6Ng01-136J01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgtggcagctcctcagaaaattcgacatattactatttgagg
acccagctataccacttctaggcatatgctcagaagatgccccaacatgt
aatgagaaatgggttctgatgatgcccctctatactggcttctgttgctt
atagtcttgtgcttgtctctcaccatctgtttatccctgttgtgtgttgg
tctgggtgattctatatggagtcgatctcttttgtcctagtttgcatcag
gtctcctggtaggcttgtggccctggctgttgtggaccacctgtggatcc
ttctacctgtgggttttacagatgggcaggaaagctgctactctgttacc
ctgactgcaatagatctcctgggaggagttcagactattgggtcttcaga
ggagcagttaagctgtgtaaaactgttctctgagtggggtggccatgaac
agtggtttctgtgcccctgtgtgcaccagagctctaggcaggctttcagt
ctattgggttagttaccctgcctgccccagagccccagagccccagggag
gtcttcagagtgtggtgtctgttgctcagttgctctgtgtatagaggagc
tcctgggatgccttcaaattgtgctgtcttcagagaagcatacaagctgc
cctgtgtgtatcagatctcatgggatgattcaggctctggtgttagttgc
ctgaatgctctaagtgcagtggatcatctgggatggctcaacatgtggta
tttttcatgggag

gaattcatatccctggcagaagctatgggaatctcccagatggcatcagc
caacagcatttgacaattccctggaattttgcctcagataaagactgaca
ataggtttaacatccagaatttcttagggaagacttaatcagtatattta
tttgaataaatacatcttttcattaatctattctacctattctagctcta
tactttcctataaggaaaatgcaatgtgtttcttcactcaatttcctgaa
taacattgtgtcctcctttccgtgtcttaccaaagtaactatttaagaat
acctaatttcaaaaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaaggaagaaggaaaggaagaaaggaagaaatatatggg
agacggggagagaagaagagtcatcttacagttttcagccactcaaagac
ccatcattctgtgtctggtatcaaaatctctaaattggtttgcttgtttg
tttgtttgtttgtttgttttttgttttgtttgattatttgatttttattt
tgtaatgtttttccaggtatatactttttctatcaatggactctctctag
tattctcacaaccacagtatccaacaatttgttcctgtgaaatctggcca
tatgatgaggatcctaaatacccacaagtttaagtgtttctagcaacaat
ctttttaggtctcaaggaccaatggcccaagcctctgtcagcactacaga
ggtacttttgtatcttaaaatacaataaaactctaggatgctttcttttc
tctggcatcttactacttgagctttgattgattcttagcaatttagtatc
aaataccttaattatacctggttttctagctgaattgtattcactactgt
cttttcatctctttcctgtatttattttcatttctactgaaaatatattt
catgcaatatttctctcagtctatactcccagttactacccactctctca
tccattcacgtttttacaaaccaaacaggagtatcagattagatccctct
ccaattcattctatctgaatggcacacttatgagtctagttagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87261278_87262397
seq2: B6Ng01-136J01.g_63_1157 (reverse)

seq1  AGCTAACTTAGACTCATAAGGTGTGCCATTTCAGATAGGAATGGGAATTT  50
      ||||||| ||||||||||| |||||||| |||||||| ||||  ||||| 
seq2  AGCTAAC-TAGACTCATAA-GTGTGCCA-TTCAGATA-GAAT--GAATT-  43

seq1  GGGAGAAGGGATCTAATCTGGATACTCCTTGTTTGGTTTGGTAAAAACGT  100
       |||| ||||||||||||| |||||||| |||||||||| ||||||||||
seq2  -GGAG-AGGGATCTAATCT-GATACTCC-TGTTTGGTTT-GTAAAAACGT  88

seq1  GAAATGGATGGAAGAGGAGGTGGGTAGTAACTGGGAGTAATAGACTGAGA  150
      | ||||||||  |||    ||||||||||||||||||| |||||||||||
seq2  G-AATGGATGAGAGA----GTGGGTAGTAACTGGGAGT-ATAGACTGAGA  132

seq1  GGAAATATTGCATGAAAATATATTTTCAGTAGAAAATGAAAATAAAATAC  200
       ||||||||||||| ||||||||||||||||| |||||||||| ||||||
seq2  -GAAATATTGCATG-AAATATATTTTCAGTAG-AAATGAAAAT-AAATAC  178

seq1  AGGAAAAGAGAATGAAAAGACAGTAGTGAATACAATTCAGCTAGAAAAAC  250
      ||| |||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGG-AAAGAG-ATGAAAAGACAGTAGTGAATACAATTCAGCTAG-AAAAC  225

seq1  CAGGTATAATTAAGGTATTTGATACTAAATTGCTAAGAATCAATCAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATAATTAAGGTATTTGATACTAAATTGCTAAGAATCAATCAAAGC  275

seq1  TCAAGTAGTAAGATGCCAGAGAAAAGAAAGCATCCTAGAGTTTTATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGTAAGATGCCAGAGAAAAGAAAGCATCCTAGAGTTTTATTGTA  325

seq1  TTTTAAGATACAAAAGTACCTCTGTAGTGCTGACAGAGGCTTGGGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATACAAAAGTACCTCTGTAGTGCTGACAGAGGCTTGGGCCATT  375

seq1  GGTCCTTGAGACCTAAAAAGATTGTTGCTAGAAACACTTAAACTTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTGAGACCTAAAAAGATTGTTGCTAGAAACACTTAAACTTGTGGG  425

seq1  TATTTAGGATCCTCATCATATGGCCAGATTTCACAGGAACAAATTGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGATCCTCATCATATGGCCAGATTTCACAGGAACAAATTGTTGG  475

seq1  ATACTGTGGTTGTGAGAATACTAGAGAGAGTCCATTGATAGAAAAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGGTTGTGAGAATACTAGAGAGAGTCCATTGATAGAAAAAGTAT  525

seq1  ATACCTGGAAAAACATTACAAAATAAAAATCAAATAATCAAACAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGAAAAACATTACAAAATAAAAATCAAATAATCAAACAAAACAA  575

seq1  AAAACAAACAAACAAACAAACAAACAAGCAAACCAATTTAGAGATTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAAACAAGCAAACCAATTTAGAGATTTTGA  625

seq1  TACCAGACACAGAATGATGGGTCTTTGAGTGGCTGAAAACTGTAAGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGACACAGAATGATGGGTCTTTGAGTGGCTGAAAACTGTAAGATGA  675

seq1  CTCTTCTTCTCTCCCCGTCTCCCATATATTTCTTCCTTTCTTCCTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCTCTCCCCGTCTCCCATATATTTCTTCCTTTCTTCCTTTCCT  725

seq1  TCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  775

seq1  TTTCTTTTTTGAAATTAGGTATTCTTAAATAGTTACTTTGGTAAGACACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTGAAATTAGGTATTCTTAAATAGTTACTTTGGTAAGACACG  825

seq1  GAAAGGAGGACACAATGTTATTCAGGAAATTGAGTGAAGAAACACATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGACACAATGTTATTCAGGAAATTGAGTGAAGAAACACATTGC  875

seq1  ATTTTCCTTATAGGAAAGTATAGAGCTAGAATAGGTAGAATAGATTAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTATAGGAAAGTATAGAGCTAGAATAGGTAGAATAGATTAATG  925

seq1  AAAAGATGTATTTATTCAAATAAATATACTGATTAAGTCTTCCCTAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTATTTATTCAAATAAATATACTGATTAAGTCTTCCCTAAGAA  975

seq1  ATTCTGGATGTTAAACCTATTGTCAGTCTTTATCTGAGGCAAAATTCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGATGTTAAACCTATTGTCAGTCTTTATCTGAGGCAAAATTCCAG  1025

seq1  GGAATTGTCAAATGCTGTTGGCTGATGCCATCTGGGAGATTCCCATAGCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTCAAATGCTGTTGGCTGATGCCATCTGGGAGATTCCCATAGCT  1075

seq1  TCTGCCAGGGATATGAATTC  1120
      ||||||||||||||||||||
seq2  TCTGCCAGGGATATGAATTC  1095


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