BAC Information

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BAC

Clone NameB6Ng01-136L08
Chromosome13 (Build37)
Map Location 101,643,227 - 101,809,883
singlet/doubletdoublet
Overlap geneLOC619865, LOC619917, EG619937
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L08.bB6Ng01-136L08.g
ACCDH936410DH936411
length1,183984
definitionDH936410|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L08, 5' end.DH936411|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,808,680 - 101,809,883)(101,643,227 - 101,644,208)
sequence
gaattcagccccagactggcacttctgagtcagccatcctcatggatgga
gcagctactagactctcttagtccgccattgttgaaccacctaaactgca
ttgtgttagccaatcaaacagtcctttcactatatatttatctatttatc
tgctcctccagagcgacctgactaatacaatatctagcataaaggaggca
catgatattcaccttgctctccgcatcctgtacactttgaattctctaag
tttgaaaagagagaaaagacagactgtcccctactatggaaactgaaagt
gttagtccttcatcacaagggcatatctgtgaagcataagcttcatgggg
cagaaaaccatattagactcagtccagaaagctctctcttactgaaagca
ctcattcttcatttcgttgtctctgtgattacgcctctcttctctactct
ccctctcgtgtgatgaaggcagcagcagtagctacaaggccaaacttgtg
tggtcctgaagcttgataatgcatctcagtttaaatattcataaaccaga
catctcttaagaaattactatctagacacagccattgcagtacattgagc
tccatagagacagcgccagggcaagcgcgagccggacgggcactgggcga
ctctgtgcctctcggaggaaaatcaactaaacatgggcaaaggagatcct
aagaagctgagaggcaaaatgtcctcatatgcattctttgtgcaaacttg
ccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcag
agttctccaagaagtgctcagagaggtggaagaccatgtctgctaaagaa
aaggggaaatttgaagatatggcaatagctgacaaggctcgttatgaaag
agaaatgaaaacctacatccccccaaaagggagaccaaaagaagttcagg
accccatgcacccaagaggcctccttcggcttcttcttgttctgttctgg
gtacgccccaaatcaaaggcgagcatcctggcttatccattggtgatgtg
caagaatcgaggagagattgtgaacaacactgcagcgatgacagcagcct
attgagaagaggctgcaagctgaaggaaagtatggaaggatattgctgcc
tacgagctaaggaaactgatgcacgaaaagggg
gaattctcttatatgaaaaattctgcaaagcagatgggttcagaacagga
gtattaggtaatgaaaatgttcttttggtatatatactttctgctttaaa
agtattagtatgcaaggcactgcgacaggaaccgaaaagaagaagtaagc
ctagataatattttaaatctgtatatgctctgttctttctgaaatagacc
ccatggaagtggcaaatactgtcctcattctgccgatgagaacacacttc
caagaaagagtaatggagaacacacagggtgatttataaaatacagcata
cgcacgcttttgtctttgtctttctctctctgtgttttgactcccggaat
tgaagacttaagaactggcactttggagggaagccttgaaagagatgtcc
cactaggacctggaggacccagttgctcttgacaccgcccacttccgctt
cctgatcatgtggttgacttgagttagtcaggccatcgagaatgagcgac
tccagagctgactacagaaaggcaggcagagaaagggctacgttttagct
cagtttggagaatcaggcaggtgtaaacaagagatgaccaaccagaagtt
aacaaggtgacacaattaggaagatttaaatcaagtctagaagccaaaaa
aagacccatgggagctgcttttcttttaaaaacatccttaccaatttatt
tatttttatttatgtgtatgtctgtgagcctaggtcaagggcatcatggg
tacgtgagtgttcgaagagcccagagagggctttggattctctggaactg
gagttatagataatcaattataaaccactgagtagcagctgggaaccaaa
tctgggacctctgtagacagacagtttctaactgctgaaccatctctcat
ctctccatcttttgactggcacatagtggggggaggggggagagagacga
gagagaagacgagagactagacgagatagacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101808680_101809883
seq2: B6Ng01-136L08.b_47_1229 (reverse)

seq1  CCCCTTTTTCGCTGCATCAGGTTTTCCTTTAGCTCTGTAGGCAGCAATAT  50
       ||| |||||| ||||||||  ||||| ||||||| ||||||||||||||
seq2  -CCCCTTTTCG-TGCATCAG--TTTCC-TTAGCTC-GTAGGCAGCAATAT  44

seq1  CCTTCTCATACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCATAGGGCTGC  100
      ||||| ||||||| ||||||||||| |||||| ||||||||   ||||||
seq2  CCTTC-CATACTT-TCCTTCAGCTT-GCAGCC-TCTTCTCAATAGGCTGC  90

seq1  TTGTCATCTGCTGCAGTGTTGTTCCACATCTCTCCTCGTTTCTTTGCAAC  150
       ||||||| |||||||||||||||   ||||||||||| ||| |||| ||
seq2  -TGTCATC-GCTGCAGTGTTGTTCACAATCTCTCCTCGATTC-TTGC-AC  136

seq1  ATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACC  200
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  ATCACCAATGGATAAGCCAGGATGCTCGCCTTTGA-TTTGGGGC-GTACC  184

seq1  CAGAACAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGG  250
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CAGAACAGAACAAGAAGAA-GCCGAAGGAGGCCTCTTGGGTGCA-TGGGG  232

seq1  TCCTTGAACTTCTTTTTGGTCTCCCTTTTGGGGGGGATGTAGGTTTTCAT  300
      ||| |||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TCC-TGAACTTC-TTTTGGTCTCCCTTTT-GGGGGGATGTAGGTTTTCAT  279

seq1  TTCTCTTTCATAACGAGCCTTGTCAGCTATTGCCATATCTTCAAATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCATAACGAGCCTTGTCAGCTATTGCCATATCTTCAAATTTCC  329

seq1  CCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAG  379

seq1  AACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTC  429

seq1  CCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCAGCT  479

seq1  TCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCGAGAGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCGAGAGGCAC  529

seq1  AGAGTCGCCCAGTGCCCGTCCGGCTCGCGCTTGCCCTGGCGCTGTCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGCCCAGTGCCCGTCCGGCTCGCGCTTGCCCTGGCGCTGTCTCTA  579

seq1  TGGAGCTCAATGTACTGCAATGGCTGTGTCTAGATAGTAATTTCTTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCAATGTACTGCAATGGCTGTGTCTAGATAGTAATTTCTTAAGA  629

seq1  GATGTCTGGTTTATGAATATTTAAACTGAGATGCATTATCAAGCTTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGGTTTATGAATATTTAAACTGAGATGCATTATCAAGCTTCAGG  679

seq1  ACCACACAAGTTTGGCCTTGTAGCTACTGCTGCTGCCTTCATCACACGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAAGTTTGGCCTTGTAGCTACTGCTGCTGCCTTCATCACACGAG  729

seq1  AGGGAGAGTAGAGAAGAGAGGCGTAATCACAGAGACAACGAAATGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGTAGAGAAGAGAGGCGTAATCACAGAGACAACGAAATGAAGAA  779

seq1  TGAGTGCTTTCAGTAAGAGAGAGCTTTCTGGACTGAGTCTAATATGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTTTCAGTAAGAGAGAGCTTTCTGGACTGAGTCTAATATGGTTT  829

seq1  TCTGCCCCATGAAGCTTATGCTTCACAGATATGCCCTTGTGATGAAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCATGAAGCTTATGCTTCACAGATATGCCCTTGTGATGAAGGAC  879

seq1  TAACACTTTCAGTTTCCATAGTAGGGGACAGTCTGTCTTTTCTCTCTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTTCAGTTTCCATAGTAGGGGACAGTCTGTCTTTTCTCTCTTTT  929

seq1  CAAACTTAGAGAATTCAAAGTGTACAGGATGCGGAGAGCAAGGTGAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAGAGAATTCAAAGTGTACAGGATGCGGAGAGCAAGGTGAATAT  979

seq1  CATGTGCCTCCTTTATGCTAGATATTGTATTAGTCAGGTCGCTCTGGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTCCTTTATGCTAGATATTGTATTAGTCAGGTCGCTCTGGAGG  1029

seq1  AGCAGATAAATAGATAAATATATAGTGAAAGGACTGTTTGATTGGCTAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAATAGATAAATATATAGTGAAAGGACTGTTTGATTGGCTAAC  1079

seq1  ACAATGCAGTTTAGGTGGTTCAACAATGGCGGACTAAGAGAGTCTAGTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGTTTAGGTGGTTCAACAATGGCGGACTAAGAGAGTCTAGTAG  1129

seq1  CTGCTCCATCCATGAGGATGGCTGACTCAGAAGTGCCAGTCTGGGGCTGA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCATCCATGAGGATGGCTGACTCAGAAGTGCCAGTCTGGGGCTGA  1179

seq1  ATTC  1204
      ||||
seq2  ATTC  1183

seq1: chr13_101643227_101644208
seq2: B6Ng01-136L08.g_64_1047

seq1  GAATTCTCTTATATGAAAAATTCTGCAAAGCAGATGGGTTCAGAACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATATGAAAAATTCTGCAAAGCAGATGGGTTCAGAACAGGA  50

seq1  GTATTAGGTAATGAAAATGTTCTTTTGGTATATATACTTTCTGCTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGGTAATGAAAATGTTCTTTTGGTATATATACTTTCTGCTTTAAA  100

seq1  AGTATTAGTATGCAAGGCACTGCGACAGGAACCGAAAAGAAGAAGTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGTATGCAAGGCACTGCGACAGGAACCGAAAAGAAGAAGTAAGC  150

seq1  CTAGATAATATTTTAAATCTGTATATGCTCTGTTCTTTCTGAAATAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAATATTTTAAATCTGTATATGCTCTGTTCTTTCTGAAATAGACC  200

seq1  CCATGGAAGTGGCAAATACTGTCCTCATTCTGCCGATGAGAACACACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGTGGCAAATACTGTCCTCATTCTGCCGATGAGAACACACTTC  250

seq1  CAAGAAAGAGTAATGGAGAACACACAGGGTGATTTATAAAATACAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAGTAATGGAGAACACACAGGGTGATTTATAAAATACAGCATA  300

seq1  CGCACGCTTTTGTCTTTGTCTTTCTCTCTCTGTGTTTTGACTCCCGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGCTTTTGTCTTTGTCTTTCTCTCTCTGTGTTTTGACTCCCGGAAT  350

seq1  TGAAGACTTAAGAACTGGCACTTTGGAGGGAAGCCTTGAAAGAGATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTTAAGAACTGGCACTTTGGAGGGAAGCCTTGAAAGAGATGTCC  400

seq1  CACTAGGACCTGGAGGACCCAGTTGCTCTTGACACCGCCCACTTCCGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGACCTGGAGGACCCAGTTGCTCTTGACACCGCCCACTTCCGCTT  450

seq1  CCTGATCATGTGGTTGACTTGAGTTAGTCAGGCCATCGAGAATGAGCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCATGTGGTTGACTTGAGTTAGTCAGGCCATCGAGAATGAGCGAC  500

seq1  TCCAGAGCTGACTACAGAAAGGCAGGCAGAGAAAGGGCTACGTTTTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCTGACTACAGAAAGGCAGGCAGAGAAAGGGCTACGTTTTAGCT  550

seq1  CAGTTTGGAGAATCAGGCAGGTGTAAACAAGAGATGACCAACCAGAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAGAATCAGGCAGGTGTAAACAAGAGATGACCAACCAGAAGTT  600

seq1  AACAAGGTGACACAATTAGGAAGATTTAAATCAAGTCTAGAAGCCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGACACAATTAGGAAGATTTAAATCAAGTCTAGAAGCCAAAAA  650

seq1  AAGACCCATGGGAGCTGCTTTTCTTTTAAAAACATCCTTACCAATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCATGGGAGCTGCTTTTCTTTTAAAAACATCCTTACCAATTTATT  700

seq1  TATTTTTATTTATGTGTATGTCTGTGAGCCTAGGTCAAGGGCATCATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTATGTGTATGTCTGTGAGCCTAGGTCAAGGGCATCATGGG  750

seq1  TACGTGAGTGTTCGAAGAGCCCAGAGAGGGCTTTGGATTCTCTGGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGAGTGTTCGAAGAGCCCAGAGAGGGCTTTGGATTCTCTGGAACTG  800

seq1  GAGTTATAGATAATCAATTATAAACCACTGAGTAGCAGCTGGGAACCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATAGATAATCAATTATAAACCACTGAGTAGCAGCTGGGAACCAAA  850

seq1  TCTGGGACCTCTGTAAGACAGACAGTTTTCTTAACTGCTGAACCATCTCT  900
      |||||||||||||| |||||||||||||   |||||||||||||||||| 
seq2  TCTGGGACCTCTGT-AGACAGACAGTTT--CTAACTGCTGAACCATCTC-  896

seq1  TCATCTCTCCATCTTTTGACTGGCACATAGTTGGGGGA-GGGGGAGAGAG  949
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TCATCTCTCCATCTTTTGACTGGCACATAGTGGGGGGAGGGGGGAGAGAG  946

seq1  AC-AGAGAGA----GAGAGAC-AGAGAGACAGAGACAGA  982
      || |||||||    ||||||| |||  || | |||||||
seq2  ACGAGAGAGAAGACGAGAGACTAGA-CGAGATAGACAGA  984