BAC Information

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BAC

Clone NameB6Ng01-136N06
Chromosome13 (Build37)
Map Location 74,062,493 - 74,063,601
singlet/doubletsinglet
Overlap geneTrip13
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360
Downstream geneBrd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136N06.bB6Ng01-136N06.g
ACCDH936499DH936500
length1,101523
definitionDH936499|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N06, 5' end.DH936500|Mus musculus domesticus DNA, BAC clone: B6Ng01-136N06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttgcaaggttaaaggaaaaaaatgtttttgtccttttcctaa
gagtcatgggatgcggacttatgagaggatctagagggaacctagaataa
ataactaaattgatatgtaaatttagaaaactgcgcttttggttggcatg
agatgagctaccaaagacatcagttctgttttagaatttttttctctagt
gagagctcttcaagaattttttctaacagaatttctgattttagttggaa
aatctatgaagaacatacacagctcttttaggagctttctagcggctatc
cagagaaggctgtctgaagagagaacacagatcttttagaatttcttttt
gttgggctttctgattttgattagaaaacccaagaattacttttagaaag
tttttaaacagttatttctgacttcatcagaagatccaataattttttat
agcagttcttctgactttggtcagagcttttagaatttttactagcagag
agagctgtcgcaactacagagtctggaaagccatctcagcaggacatagg
cttggactggtgatttgactttgagttgttttcaccgctcctaaacaccc
agtttctcaggaacccctctccaagccaaggctagcccttggcaagataa
gaccacagggacatcaatgtccttttcctactgtgtcacccatgagtatg
acaccaggagcagagaaacttttctttggtatacatgctgtaggacagtg
ctccgctgccaccattatcctcagggtactttacaagactgaatcaatcc
aatagctgactgtgagcatctacttctgtgtttgttaggccccggcatag
tctcacaagagacagctatatctaggtcctttcagcaaatcttgctagtg
tatgcaatggtgtcagcgtttggaagctgattatgggatggatccccaga
tatggccgtctctagatggtccatcctttcgtcacagctccaattttgtc
tctgtactccttcatgggtgtttgttctaatactaagaagggcaaagtgt
tcacactttgtcttcttcttgagttcatggtgtttagcaaattgatctta
t
ctatggtgcataccctgcctccccttgccctttctttgtgtccttcctct
tcaagtgggtcagactaggtagcctgttggtgggagaatatgttttagag
tgatttttgttttgtgttgtgattcagaattaagacactattgcacatgc
cagaaagattttgctgacaggatcctgatatagctgtctcgtgtgaggct
attccagtgcctgacaaacacagaagtggatgctcacactcatctataag
atggaacacagggcccccaatggaggagctagagaaagtacccaagagct
gaaggggtctgcaaccctataggaggaacaacaatatgaactaaccagta
ccccccagagctcgtgtctctagctgcatatgtagcagaggatggcttag
tcggtcatcaatgggaggagaggcccttggtcttgcgaagatcatatgcc
ccccaacccccagtacaggggaatgccaggaccaggaagcaggagtgggt
gggttggggagcagggtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74062493_74063601
seq2: B6Ng01-136N06.b_48_1148

seq1  GAATTCTTTTGCAAGGTTAAAGGAAAAAAATGTTTTTGTCCTTTTCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAAGGTTAAAGGAAAAAAATGTTTTTGTCCTTTTCCTAA  50

seq1  GAGTCATGGGATGCGGACTTATGAGAGGATCTAGAGGGAACCTAGAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGGGATGCGGACTTATGAGAGGATCTAGAGGGAACCTAGAATAA  100

seq1  ATAACTAAATTGATATGTAAATTTAGAAAACTGCGCTTTTGGTTGGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAATTGATATGTAAATTTAGAAAACTGCGCTTTTGGTTGGCATG  150

seq1  AGATGAGCTACCAAAGACATCAGTTCTGTTTTAGAATTTTTTTCTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCTACCAAAGACATCAGTTCTGTTTTAGAATTTTTTTCTCTAGT  200

seq1  GAGAGCTCTTCAAGAATTTTTTCTAACAGAATTTCTGATTTTAGTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCTTCAAGAATTTTTTCTAACAGAATTTCTGATTTTAGTTGGAA  250

seq1  AATCTATGAAGAACATACACAGCTCTTTTAGGAGCTTTCTAGCGGCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGAAGAACATACACAGCTCTTTTAGGAGCTTTCTAGCGGCTATC  300

seq1  CAGAGAAGGCTGTCTGAAGAGAGAACACAGATCTTTTAGAATTTCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGGCTGTCTGAAGAGAGAACACAGATCTTTTAGAATTTCTTTTT  350

seq1  GTTGGGCTTTCTGATTTTGATTAGAAAACCCAAGAATTACTTTTAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTTCTGATTTTGATTAGAAAACCCAAGAATTACTTTTAGAAAG  400

seq1  TTTTTAAACAGTTATTTCTGACTTCATCAGAAGATCCAATAATTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACAGTTATTTCTGACTTCATCAGAAGATCCAATAATTTTTTAT  450

seq1  AGCAGTTCTTCTGACTTTGGTCAGAGCTTTTAGAATTTTTACTAGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCTTCTGACTTTGGTCAGAGCTTTTAGAATTTTTACTAGCAGAG  500

seq1  AGAGCTGTCGCAACTACAGAGTCTGGAAAGCCATCTCAGCAGGACATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTCGCAACTACAGAGTCTGGAAAGCCATCTCAGCAGGACATAGG  550

seq1  CTTGGACTGGTGATTTGACTTTGAGTTGTTTTCACCGCTCCTAAACACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTGGTGATTTGACTTTGAGTTGTTTTCACCGCTCCTAAACACCC  600

seq1  AGTTTCTCAGGAACCCCTCTCCAAGCCAAGGCTAGCCCTTGGCAAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCAGGAACCCCTCTCCAAGCCAAGGCTAGCCCTTGGCAAGATAA  650

seq1  GACCACAGGGACATCAATGTCCTTTTCCTACTGTGTCACCCATGAGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGGACATCAATGTCCTTTTCCTACTGTGTCACCCATGAGTATG  700

seq1  ACACCAGGAGCAGAGAAACTTTTCTTTGGTATACATGCTGTAGGACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGAGCAGAGAAACTTTTCTTTGGTATACATGCTGTAGGACAGTG  750

seq1  CTCCGCTGCCACCATTATCCTCAGGGTACTTTACAAGACTGAATCAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCTGCCACCATTATCCTCAGGGTACTTTACAAGACTGAATCAATCC  800

seq1  AATAGCTGACTGTGAGCATCTACTTCTGTGTTTGTTAGGCCCCGGCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGACTGTGAGCATCTACTTCTGTGTTTGTTAGGCCCCGGCATAG  850

seq1  TCTCACAAGAGACAGCTATATCTAGGTCCTTTCAGCAAATCTTGCTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGAGACAGCTATATCTAGGTCCTTTCAGCAAATCTTGCTAGTG  900

seq1  TATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCCAGA  950

seq1  TATGGCCGTCTCTAGATGGTCCATCCTTTCGTCACAGCTCCAAATTTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGGCCGTCTCTAGATGGTCCATCCTTTCGTCACAGCTCC-AATTTTGT  999

seq1  CTCTGTAACTCCTTCCATGGGTGTTTTGTTCCTAATACTAAGAAGGGGCA  1050
      |||||| ||||||| |||||||| |||||| ||||||||||||| |||||
seq2  CTCTGT-ACTCCTT-CATGGGTG-TTTGTT-CTAATACTAAGAA-GGGCA  1044

seq1  AAGTGTCCACACTTTGGTCTTCTTCTTGAGTTTCAT-GTGTTTAGCAAAT  1099
      |||||| |||||||| |||||||||||||| ||||| |||||||||||||
seq2  AAGTGTTCACACTTT-GTCTTCTTCTTGAG-TTCATGGTGTTTAGCAAAT  1092

seq1  TGTATCTTAT  1109
      || |||||||
seq2  TG-ATCTTAT  1101