BAC Information

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BAC

Clone NameB6Ng01-137A19
Chromosome13 (Build37)
Map Location 65,957,072 - 66,096,411
singlet/doubletdoublet
Overlap geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneEG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137A19.bB6Ng01-137A19.g
ACCDH936665DH936666
length1,015857
definitionDH936665|Mus musculus domesticus DNA, BAC clone: B6Ng01-137A19, 5' end.DH936666|Mus musculus domesticus DNA, BAC clone: B6Ng01-137A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,095,796 - 66,096,411)(65,957,072 - 65,957,919)
sequence
gaattccactttggtaaaatacatgccacatgttttccagtattaattgc
ccatcccccaccccaccccttcctcactataaatttctagatattttctt
agaactaactttcaggtaaaggtctgttctcatgaggtttctctcctgtg
tgtagtctctgatgtcagagatgacctaacagtaaagactttgaacattt
acatttgaaagatcaccctcctgtatgtattctttgatgagttctaagat
gatctttcttggtgaagggtttgtcttatttgcttcatttttagatattc
tctagtttgtgcattctttgatgagtgtaaaaactacatttaagtctaaa
gaattcatcacattcattacatttataaggtttctctcctgtatgaatta
cctgatgaatactaagactgtgtttgtgggtaaagcgtttgtcacattca
ctaaacttttaaggcttctctcctgtatgaattctctgatgatttctaag
actgcatttgttactaaagcatttgtcacattccctacatttattaggat
tctctcctgtatgaattctctgatgaattataagatcatatttgtgagtg
aagcatttgtcacattcactacattgataagggttttcccctgtatgaat
tctctgatgaacattaagattatatttttgggtaaagcatttctcacatt
cactacatttgtaaggtttttctcctgtataaactctgatgaatagtttt
gggtaaagctttttgtcacattcactacatttgtaaggtttctttcctgt
atgaattatttgatgactactaacattacatttttgggtaaagcatttgt
tacattcactacatttgtaggcttctttcctgtatgaattatctgatgac
ttctaggactgtgtttgtcagtacagcatttgtcacactcactacattta
taagtttctctccagtatgattctctgatgaatactaagactgtatttgt
gcaaaagcatttgtc
gaattcacctttaaaaaataggacccagggctggagagatggctcagtgg
ttaagagacccgactgctctcccgaagattctgagttcaagtcccagcaa
ccacatggtggctcaaaaccatacatagtgagatctgacgacctcatctg
gtgtgtctgaagacagctacagtgaacttacatatagcaataaataaatc
ttaaaaaaaaaaaaaggacccaggagggatggggtgaagaacttggggag
ggaaccagaaaggggggcaacatttggaatgtaaataaataaataattta
cttaaaataaaagaaaattaggatccagtgaaagccaggcatggtggcac
aaacctctaattccattgcttgggagataggggcaagcagatctctgtga
gtttgaagcccagcttggttacatagtatgttccacagctgcatatggag
gccctgtctccaaccaaaccagccaaccaaccaaccaaccatacaggata
tgtggccaatgagatagctctgggagtagagtactgtcagacctgaggaa
aaaaacattctcataactttctgcttaaatgcaagctgtgcccaaggaac
tgaccagacaactgattgcctcctgctaagttggagtttcaaagaacagc
cccttactggcttttgaggtcccctttatgggggtgggttagggttgata
gaaaacagctgtttgagatagttggctgttagcacctgaacagaaagatt
aggggactcaggcctcaagggctgcctaagtcttagattagtgcgggaat
aacttcatatggaatggggggttcacacagggttcaggagtttagcaagg
caaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66095796_66096411
seq2: B6Ng01-137A19.b_45_660 (reverse)

seq1  AATGTGACAAATGCTTCACTCACAAATATGATCTTATAATTCATCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACAAATGCTTCACTCACAAATATGATCTTATAATTCATCAGAGA  50

seq1  ATTCATACAGGAGAGAATCCTAATAAATGTAGGGAATGTGACAAATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACAGGAGAGAATCCTAATAAATGTAGGGAATGTGACAAATGCTT  100

seq1  TAGTAACAAATGCAGTCTTAGAAATCATCAGAGAATTCATACAGGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAAATGCAGTCTTAGAAATCATCAGAGAATTCATACAGGAGAGA  150

seq1  AGCCTTAAAAGTTTAGTGAATGTGACAAACGCTTTACCCACAAACACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTAAAAGTTTAGTGAATGTGACAAACGCTTTACCCACAAACACAGT  200

seq1  CTTAGTATTCATCAGGTAATTCATACAGGAGAGAAACCTTATAAATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTATTCATCAGGTAATTCATACAGGAGAGAAACCTTATAAATGTAA  250

seq1  TGAATGTGATGAATTCTTTAGACTTAAATGTAGTTTTTACACTCATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGATGAATTCTTTAGACTTAAATGTAGTTTTTACACTCATCAAA  300

seq1  GAATGCACAAACTAGAGAATATCTAAAAATGAAGCAAATAAGACAAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACAAACTAGAGAATATCTAAAAATGAAGCAAATAAGACAAACCC  350

seq1  TTCACCAAGAAAGATCATCTTAGAACTCATCAAAGAATACATACAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAAGAAAGATCATCTTAGAACTCATCAAAGAATACATACAGGAGG  400

seq1  GTGATCTTTCAAATGTAAATGTTCAAAGTCTTTACTGTTAGGTCATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTTCAAATGTAAATGTTCAAAGTCTTTACTGTTAGGTCATCTCT  450

seq1  GACATCAGAGACTACACACAGGAGAGAAACCTCATGAGAACAGACCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGAGACTACACACAGGAGAGAAACCTCATGAGAACAGACCTTTA  500

seq1  CCTGAAAGTTAGTTCTAAGAAAATATCTAGAAATTTATAGTGAGGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTTAGTTCTAAGAAAATATCTAGAAATTTATAGTGAGGAAGGG  550

seq1  GTGGGGTGGGGGATGGGCAATTAATACTGGAAAACATGTGGCATGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGGGGGATGGGCAATTAATACTGGAAAACATGTGGCATGTATTT  600

seq1  TACCAAAGTGGAATTC  616
      ||||||||||||||||
seq2  TACCAAAGTGGAATTC  616

seq1: chr13_65957072_65957919
seq2: B6Ng01-137A19.g_68_920

seq1  GAATTCACCTTTAAAAAATAGGACCCAGGGCTGGAGAGATGGCTCAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTAAAAAATAGGACCCAGGGCTGGAGAGATGGCTCAGTGG  50

seq1  TTAAGAGACCCGACTGCTCTCCCGAAGATTCTGAGTTCAAGTCCCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGACCCGACTGCTCTCCCGAAGATTCTGAGTTCAAGTCCCAGCAA  100

seq1  CCACATGGTGGCTCAAAACCATACATAGTGAGATCTGACGACCTCATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCAAAACCATACATAGTGAGATCTGACGACCTCATCTG  150

seq1  GTGTGTCTGAAGACAGCTACAGTGAACTTACATATAGCAATAAATAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGAAGACAGCTACAGTGAACTTACATATAGCAATAAATAAATC  200

seq1  TTAAAAAAAAAAAAAGGACCCAGGAGGGATGGGGTGAAGAACTTGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAGGACCCAGGAGGGATGGGGTGAAGAACTTGGGGAG  250

seq1  GGAACCAGAAAGGGGGGCAACATTTGGAATGTAAATAAATAAATAATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGAAAGGGGGGCAACATTTGGAATGTAAATAAATAAATAATTTA  300

seq1  CTTAAAATAAAAGAAAATTAGGATCCAGTGAAAGCCAGGCATGGTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAAAAGAAAATTAGGATCCAGTGAAAGCCAGGCATGGTGGCAC  350

seq1  AAACCTCTAATTCCATTGCTTGGGAGATAGGGGCAAGCAGATCTCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTAATTCCATTGCTTGGGAGATAGGGGCAAGCAGATCTCTGTGA  400

seq1  GTTTGAAGCCCAGCTTGGTTACATAGTATGTTCCACAGCTGCATATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCCCAGCTTGGTTACATAGTATGTTCCACAGCTGCATATGGAG  450

seq1  GCCCTGTCTCCAACCAAACCAGCCAACCAACCAACCAACCATACAGGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCTCCAACCAAACCAGCCAACCAACCAACCAACCATACAGGATA  500

seq1  TGTGGCCAATGAGATAGCTCTGGGAGTAGAGTACTGTCAGACCTGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAATGAGATAGCTCTGGGAGTAGAGTACTGTCAGACCTGAGGAA  550

seq1  AAAAACATTCTCATAACTTTCTGCTTAAATGCAAGCTGTGCCCAAGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTCTCATAACTTTCTGCTTAAATGCAAGCTGTGCCCAAGGAAC  600

seq1  TGACCAGACAACTGATTGCCTCCTGCTAAGTTGGAGTTTCAAAGAACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGACAACTGATTGCCTCCTGCTAAGTTGGAGTTTCAAAGAACAGC  650

seq1  CCCTTACTGGCTTTTGAGGTCCCCTTTATGGGGGTGGGTTAGGGTTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTGGCTTTTGAGGTCCCCTTTATGGGGGTGGGTTAGGGTTGATA  700

seq1  GAAAACAGCTG-TTGAGATAGTTGGCTGTTAGCACCTGAACAG-AAGAAT  748
      ||||||||||| ||||||||||||||||||||||||||||||| |||| |
seq2  GAAAACAGCTGTTTGAGATAGTTGGCTGTTAGCACCTGAACAGAAAGATT  750

seq1  AGGGGACTCAGGCCTCAA-GGCTGCCTAAGTCTTAGATAAGTGCAGGAAT  797
      |||||||||||||||||| ||||||||||||||||||| ||||| |||||
seq2  AGGGGACTCAGGCCTCAAGGGCTGCCTAAGTCTTAGATTAGTGCGGGAAT  800

seq1  -ACTTCATATGGAATGGGGG--TCACCACAGGGTTCAGGAGTTTAGCAAG  844
       |||||||||||||||||||  ||| ||||||||||||||||||||||||
seq2  AACTTCATATGGAATGGGGGGTTCA-CACAGGGTTCAGGAGTTTAGCAAG  849

seq1  GCAA  848
      ||||
seq2  GCAA  853