BAC Information

Click to search

BAC

Clone NameB6Ng01-137G20
Chromosome13 (Build37)14 (Build37)
Map Location 29,843,576 - 29,844,80110,800,932 - 10,801,221
singlet/doubletsingletsinglet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137G20.bB6Ng01-137G20.g
ACCDH936947DH936948
length1,175998
definitionDH936947|Mus musculus domesticus DNA, BAC clone: B6Ng01-137G20, 5' end.DH936948|Mus musculus domesticus DNA, BAC clone: B6Ng01-137G20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,843,576 - 29,844,801)(10,800,932 - 10,801,221)
sequence
gaattctgtcatttactgtggtttcaggtttgcttttgtttgtttataga
ggaaaatgtggtcctttatacacccaaaggggaaaaaagaaaaaaggaaa
aaaaaaaaaaacaaacaaacaaaccaacaaaccaacaaacgggtagcatt
gcttaatctggagaactcactaagtagaccagcctagcacgacactctga
gtgtgacacctcctgagcactgggcttcagggcatgtgccaccatggcca
gccgtggcttacactttgtaaaacagttactgaaggattttagggatctg
gaatcaattatcagaaatgatatctaggttcctgaaacctgactactggt
atctgtaataagaaaagaaaataaatatattcacatttgaaatacttaaa
atggaagtcggggtagatgacgaaaggtgagcagctgccttagaccttca
ataatgaccctcttgaaagcagatctctcgaggacattagccggccatct
agcctaggggacatgttccaaaatcaaaaatcaagtagatggcaaacaac
gcccaaggttgatctttgacctctaagttggacacaggagagaacaccat
gcccagacagaataatgagaccgtcacaaaaacaaaacaacaaaaaaagg
gttttaataatttctttttaactggccccagacattacctgacctaagga
catgtgtgcccactcagaaggcagttgaaagaaaaaactataaggtgtaa
cttttgtcatcaacttgaccatatcaaattggaatccatcaaaacccaag
cagccagggacacctgtgaggaattttttgactagactatctgaagtggg
aagacagactaaatctggaccaatcagtggcagcagcccacatgcaatga
catgaagaaggaagacgacgaagacgacgaagagacgagagagagaagag
acttttgctttttgctcgcttgcctcactctcgagactgcagtgcatctg
tactgcttagcctccttcttcgaatcagcactactattcagtccggtagc
tctgggaatccctcaggacttcagctctagatggatgctgaacattcaac
ctatggatcaacaactctgctatccttgcatttcgctgtgaaagacactg
ttgaaacacgaaacagcctgtgaac
gaattctcacctgaggaataccgaatggctgagaagcacctgcgaaaatt
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctcccttattggtg
ggattgcaagcttgtacaaccactctggaaatcagtctgacggttcctca
gaaaattggacatagtactaccagaggatcccacaatacctctcctgggc
atatatccagaagatgttccaaccggtaaggacacatgctccactatgtt
catagcagctttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctagagggcttcatcctgagtgaggtgacccagtcacaaaaga
actcacatgatatgtacttactgattattggatatttagcccagaaactt
agaataccgaagttaaaagatacagtttgcgaaacacatgaaactcaaga
agaacgaagaccaaagtttggacactttgccccttcttagaattgggaac
aaaacacccatgtaaggagttacagagacaaagtttggagctagacgaaa
ggatggaccatctagagactgccatatctggggatccatcccataatcag
cttccaaacgctggcaccattgcatacactagaaagattttgctgaaagg
accctgatatagctgtctcttgtgagactatgctggggcctagtaaatac
agaactgaatgctcacagtcagctattggatggatcacagggtccctaat
ggaggaactagagaaagtactctaaggagctaaagggatctgcaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29843576_29844801
seq2: B6Ng01-137G20.b_48_1222

seq1  GAATTCTGTCATTTACTGTGGTTTCAGGTTTGCTTTTGTTTGTTTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATTTACTGTGGTTTCAGGTTTGCTTTTGTTTGTTTATAGA  50

seq1  GGAAAATGTGGTCCTTTATACACCCAAAGGGGAAAAAAGAAAAAAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGTGGTCCTTTATACACCCAAAGGGGAAAAAAGAAAAAAGGAAA  100

seq1  AAAAAAAAAAACAAACAAACAAACCAACAAACCAACAAACGGGTAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACAAACAAACAAACCAACAAACCAACAAACGGGTAGCATT  150

seq1  GCTTAATCTGGAGAACTCACTAAGTAGACCAGCCTAGCACGACACTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATCTGGAGAACTCACTAAGTAGACCAGCCTAGCACGACACTCTGA  200

seq1  GTGTGACACCTCCTGAGCACTGGGCTTCAGGGCATGTGCCACCATGGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACACCTCCTGAGCACTGGGCTTCAGGGCATGTGCCACCATGGCCA  250

seq1  GCCGTGGCTTACACTTTGTAAAACAGTTACTGAAGGATTTTAGGGATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGCTTACACTTTGTAAAACAGTTACTGAAGGATTTTAGGGATCTG  300

seq1  GAATCAATTATCAGAAATGATATCTAGGTTCCTGAAACCTGACTACTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATTATCAGAAATGATATCTAGGTTCCTGAAACCTGACTACTGGT  350

seq1  ATCTGTAATAAGAAAAGAAAATAAATATATTCACATTTGAAATACTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAATAAGAAAAGAAAATAAATATATTCACATTTGAAATACTTAAA  400

seq1  ATGGAAGTCGGGGTAGATGACGAAAGGTGAGCAGCTGCCTTAGACCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTCGGGGTAGATGACGAAAGGTGAGCAGCTGCCTTAGACCTTCA  450

seq1  ATAATGACCCTCTTGAAAGCAGATCTCTCGAGGACATTAGCCGGCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACCCTCTTGAAAGCAGATCTCTCGAGGACATTAGCCGGCCATCT  500

seq1  AGCCTAGGGGACATGTTCCAAAATCAAAAATCAAGTAGATGGCAAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGGGACATGTTCCAAAATCAAAAATCAAGTAGATGGCAAACAAC  550

seq1  GCCCAAGGTTGATCTTTGACCTCTAAGTTGGACACAGGAGAGAACACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGTTGATCTTTGACCTCTAAGTTGGACACAGGAGAGAACACCAT  600

seq1  GCCCAGACAGAATAATGAGACCGTCACAAAAACAAAACAACAAAAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGACAGAATAATGAGACCGTCACAAAAACAAAACAACAAAAAAAGG  650

seq1  GTTTTAATAATTTCTTTTTAACTGGCCCCAGACATTACCTGACCTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATAATTTCTTTTTAACTGGCCCCAGACATTACCTGACCTAAGGA  700

seq1  CATGTGTGCCCACTCAGAAGGCAGTTGAAAGAAAAAACTATAAGGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGCCCACTCAGAAGGCAGTTGAAAGAAAAAACTATAAGGTGTAA  750

seq1  CTTTTGTCATCAACTTGACCATATCAAATTGGAATCCATCAAAACCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCATCAACTTGACCATATCAAATTGGAATCCATCAAAACCCAAG  800

seq1  CAGCCAGGGACACCTGTGAGGAATTTTTTGACTAGACTATCTGAAGTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGACACCTGTGAGGAATTTTTTGACTAGACTATCTGAAGTGGG  850

seq1  AAGACAGACTAAATCTGGACCAATCAGTGGCAGCAGCCCACATGCAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGACTAAATCTGGACCAATCAGTGGCAGCAGCCCACATGCAATGA  900

seq1  CATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  950
      ||||||                     ||||||||  | || |  | || 
seq2  CATGAA---------------------GAAGGAAG--ACGACG--AAGAC  925

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGCTTTTGCTTTTTTGCCTCGCT  1000
      |  | ||||  | ||  ||  ||| ||  ||||||||||||   ||||||
seq2  G--ACGAAGAGACGAGAGAGAGAA-GAGACTTTTGCTTTTT--GCTCGCT  970

seq1  TGCCCTCACTCTCGAGACTGCAGGTGCATCTGTACTGCTCTAGCACTCCT  1050
      || ||||||||||||||||||| |||||||||||||||| |||| |||||
seq2  TG-CCTCACTCTCGAGACTGCA-GTGCATCTGTACTGCT-TAGC-CTCCT  1016

seq1  TCATCAGAATCAGCACCTACTTATTCAGGTCCGGTAGCTCTGGGAATCCT  1100
      || || ||||||||| |||| |||||| ||||||||||||||||||||| 
seq2  TCTTC-GAATCAGCA-CTAC-TATTCA-GTCCGGTAGCTCTGGGAATCCC  1062

seq1  CCAGGACTCCAGCTCTAGACTGGACTGCTGAGACATCCAGCCTTATGGAC  1150
       ||||||| |||||||||| |||| |||||| |||| || || |||||| 
seq2  TCAGGACTTCAGCTCTAGA-TGGA-TGCTGA-ACATTCAACC-TATGGA-  1107

seq1  TCAACAACTCCTGCATTCTTGGCATTTCCGCTGTGAGAAAGACATTGTTG  1200
      ||||||||| ||||  || | |||||| ||||||  |||||||| |||||
seq2  TCAACAACT-CTGCTATCCTTGCATTT-CGCTGT--GAAAGACACTGTTG  1153

seq1  GAATACCCAGAACACAGCCTGTGAAC  1226
       || ||   ||| |||||||||||||
seq2  AAACAC---GAA-ACAGCCTGTGAAC  1175

seq1: chr14_10800932_10801221
seq2: B6Ng01-137G20.g_777_1066

seq1  CATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGA  50
      |||| ||||||||||||||||||||||||||||| ||| |||||||||||
seq2  CATGTAAGGAGTTACAGAGACAAAGTTTGGAGCT-AGACGAAAGGATGGA  49

seq1  CCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAA  100
      |||| ||||||||||||||||  |||||||| |||||||||||| |||||
seq2  CCATCTAGAGACTGCCATATCTGGGGATCCATCCCATAATCAGCTTCCAA  99

seq1  ACGCTGACACCATTGGATACACTAGCAAGATTTTATTGAAAGGACCCAGA  150
      |||||| |||||||| ||||||||| ||||||||  ||||||||||| ||
seq2  ACGCTGGCACCATTGCATACACTAGAAAGATTTTGCTGAAAGGACCCTGA  149

seq1  TGTAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAAGTG  200
      | |||||||||||||||||||||||||||||||||| ||| |||||| ||
seq2  TATAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGTAAATACAGAACTG  199

seq1  GATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAG  250
       ||||||||||||||||| ||||||||||| ||||  || ||||||||| 
seq2  AATGCTCACAGTCAGCTATTGGATGGATCACAGGGTCCCTAATGGAGGAA  249

seq1  CTAGAGAAAGTA-GCCAAGGAGCTAAAGGGATCTGCAACCC  290
      ||||||||||||  | |||||||||||||||||||||| ||
seq2  CTAGAGAAAGTACTCTAAGGAGCTAAAGGGATCTGCAATCC  290