BAC Information

Click to search

BAC

Clone NameB6Ng01-138I06
Chromosome13 (Build37)
Map Location 45,059,940 - 45,061,031
singlet/doubletsinglet
Overlap geneDtnbp1
Upstream geneA730030A06, EG637868, EG667157, Jarid2
Downstream geneHsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I06.bB6Ng01-138I06.g
ACCDH937755DH937756
length1,0421,080
definitionDH937755|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I06, 5' end.DH937756|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagcccaaggtcttgctaaggacgaactaggactgttggaaca
ctggcggacggctttagctatgtcaggattcaatcttaaaaggcacttat
gataggaaaatattgaaagagagcacgtggatccatacactagactaacg
cgggaatggaatgtgggaatgaaaaatcgctgtatgggtagggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctctcggcttgtccagttgactcgaccagagagtgtagcagtaa
atgacatgtaactccttattatcaaacagagccactgaactgcgttaaaa
atcctcttcgccctagctgttcctccctccctgcctccctcttggctcct
ggaagccatcggctccacggatttttgttgctatttgtttgtttgacttt
tccagaataccacattgtagactaaccctttctgcgtcatgccattccta
aagtaatattcacttaaggtctccaagccccttcatggtgtgacagctca
ctgctcagtggaagatcgtgtgctgtcctagggatgtgccttcatttatt
ggtccatttacctgattgcagcatcagggtcacttccaactttaaacaag
tgtaaatatagcttctccagacatactggtgccgggagacactttccact
tatttaagtaaataccatagagttagactgctgggtggtctggaaagggt
gtagttgtttttgtagcagactgaagccattgtgtcctcactgggcaatg
actgtgaggttttccacattaccacctgtgttccaccttttctaacaggt
atatacgtagcatcttgtcagctggaataatggctcggctattaagaacc
ctggctgctcttccagaggaccacacttcagttctcagcagttgggtcgg
gagctcacagcctgtgattccactcaagggtcccagcactacttatgatt
tcgttgggactggccacattgtggccacctcatgcaacctca
gaattcacacattctcagttttgcaccaaccgtctttgaggctgccatct
ttgttagtccagaaatatttacttagttccagtttgtagggaaaagtttt
gctgcttctctgaagcagaggaaaaagagagagtctgcctgccaggcaga
gccaaggcaggttggggcctgttggcagatttcccagccttctgaggtat
gggaaggtaagaggaggtgcgcctggggctcaaggctaggggctaaagat
tctattgaccttggtggaaagaacagaggcttttgggatgggaagaaatg
tcttgtgcacctttaagcaaattgtttctgatagcttgcagccttgtttc
acaagatactattaagtatataaataagagaattaaacttgaggctgcca
cagtgctgactggacgccctcctgatttctaacctttgtctctgagtctt
cttttctgttttttccataatcatcctcactctcccctccgaggactgct
tgacttagcaccagccgggctggtgaacagtgctgctaagtcactcatct
ttcagatccaggctccgtaatctaaaacctctctggtgttttatagccct
cacctctgatgtagtgaacagtggacctttccccactcgatatgctgagt
cctggctcctggaacgtgaccaggatcaaacctctccatatctgtccctt
cacccagaaatcctgctctcagttccttcctcttcccaggccactgtggt
tcccaaggccacagcagcagctggctcacatctgggctctcacccaggtc
aggctaccctgtagcggtggctcatcgctgtgcccctgcaccttcgggaa
cacggatgcccctctgtcacaggggttcctcgtccaccttcttgctcttc
tgagctatagccatccacttccttataacttttgtgtattgtacaaaata
aaataacctagatttgttggaatgaaactgttcaattctgtcttcgctgt
agcaatatttaaccacacacattgctaatcagcatgtagtattaggttga
ttgctcttaacgtgaaatactcacctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45059940_45061031
seq2: B6Ng01-138I06.g_66_1145

seq1  GAATTCACACATTCTCAGTTTTGCACCAACCGTCTTTGAGGCTGCCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATTCTCAGTTTTGCACCAACCGTCTTTGAGGCTGCCATCT  50

seq1  TTGTTAGTCCAGAAATATTTACTTAGTTCCAGTTTGTAGGGAAAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTCCAGAAATATTTACTTAGTTCCAGTTTGTAGGGAAAAGTTTT  100

seq1  GCTGCTTCTCTGAAGCAGAGGAAAAAGAGAGAGTCTGCCTGCCAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCTCTGAAGCAGAGGAAAAAGAGAGAGTCTGCCTGCCAGGCAGA  150

seq1  GCCAAGGCAGGTTGGGGCCTGTTGGCAGATTTCCCAGCCTTCTGAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCAGGTTGGGGCCTGTTGGCAGATTTCCCAGCCTTCTGAGGTAT  200

seq1  GGGAAGGTAAGAGGAGGTGCGCCTGGGGCTCAAGGCTAGGGGCTAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTAAGAGGAGGTGCGCCTGGGGCTCAAGGCTAGGGGCTAAAGAT  250

seq1  TCTATTGACCTTGGTGGAAAGAACAGAGGCTTTTGGGATGGGAAGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGACCTTGGTGGAAAGAACAGAGGCTTTTGGGATGGGAAGAAATG  300

seq1  TCTTGTGCACCTTTAAGCAAATTGTTTCTGATAGCTTGCAGCCTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCACCTTTAAGCAAATTGTTTCTGATAGCTTGCAGCCTTGTTTC  350

seq1  ACAAGATACTATTAAGTATATAAATAAGAGAATTAAACTTGAGGCTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATACTATTAAGTATATAAATAAGAGAATTAAACTTGAGGCTGCCA  400

seq1  CAGTGCTGACTGGACGCCCTCCTGATTTCTAACCTTTGTCTCTGAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGACTGGACGCCCTCCTGATTTCTAACCTTTGTCTCTGAGTCTT  450

seq1  CTTTTCTGTTTTTTCCATAATCATCCTCACTCTCCCCTCCGAGGACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTTTTTTCCATAATCATCCTCACTCTCCCCTCCGAGGACTGCT  500

seq1  TGACTTAGCACCAGCCGGGCTGGTGAACAGTGCTGCTAAGTCACTCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGCACCAGCCGGGCTGGTGAACAGTGCTGCTAAGTCACTCATCT  550

seq1  TTCAGATCCAGGCTCCGTAATCTAAAACCTCTCTGGTGTTTTATAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCCAGGCTCCGTAATCTAAAACCTCTCTGGTGTTTTATAGCCCT  600

seq1  CACCTCTGATGTAGTGAACAGTGGACCTTTCCCCACTCGATATGCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGATGTAGTGAACAGTGGACCTTTCCCCACTCGATATGCTGAGT  650

seq1  CCTGGCTCCTGGAACGTGACCAGGATCAAACCTCTCCATATCTGTCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCTGGAACGTGACCAGGATCAAACCTCTCCATATCTGTCCCTT  700

seq1  CACCCAG-AATCCTGCTCTCAGTTCCTTCCTCTTCCCAGGCCACTGTGGT  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGAAATCCTGCTCTCAGTTCCTTCCTCTTCCCAGGCCACTGTGGT  750

seq1  TCCCAAGGCCACAGCAGCAGCTGGCTCACATCTGGGCTCTCACCCAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGCCACAGCAGCAGCTGGCTCACATCTGGGCTCTCACCCAGGTC  800

seq1  AGGCTACCCTGTAGCGGGTGGCTCATCGCTGTGCCCCTGCACCTTCGGGA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGGCTACCCTGTAGC-GGTGGCTCATCGCTGTGCCCCTGCACCTTCGGGA  849

seq1  ACACGGATGCCCCTCTGTCACAGGGGTTCCCTCGTCCACCTTCTTGCTCT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACACGGATGCCCCTCTGTCACAGGGGTT-CCTCGTCCACCTTCTTGCTCT  898

seq1  TCTGAGCTATAGCCATCCACTTCCTTATAACTTTTGTGTATTGTACAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTATAGCCATCCACTTCCTTATAACTTTTGTGTATTGTACAAAA  948

seq1  ATAAAAATAACCTAGATTTGTTGGAATGAAACTGTTCAATTCTGTCTTCG  999
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TAAAATAACCTAGATTTGTTGGAATGAAACTGTTCAATTCTGTCTTCG  996

seq1  CTGTAGCAAATTATTTACACACAACACATTGCTAATCAGTCATGTTAGTA  1049
      |||||||||  ||||||  ||| |||||||||||||||| |||| |||| 
seq2  CTGTAGCAA--TATTTAACCAC-ACACATTGCTAATCAG-CATG-TAGT-  1040

seq1  ATTAGGTTGATTTGCTTCTTAAACGTGAGATACTCACCTGCAG  1092
      |||||||||| |||| |||| ||||||| ||||||||||||||
seq2  ATTAGGTTGA-TTGC-TCTT-AACGTGAAATACTCACCTGCAG  1080