BAC Information

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BAC

Clone NameB6Ng01-139A09
Chromosome13 (Build37)
Map Location 88,915,676 - 88,916,401
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139A09.bB6Ng01-139A09.g
ACCDH938114DH938115
length1,180794
definitionDH938114|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A09, 5' end.DH938115|Mus musculus domesticus DNA, BAC clone: B6Ng01-139A09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaccctcaatgagctacaaccctcaatacatcacaattcctc
ctcccaacacttaacattcattgcagaaagggaaagaaagttgttaggag
ttggagtttggagatgattataagcaaatactatcatttggacaccatag
ggcagctgcacatatcatacctcagcagttgttaaagtatgcacaggacc
tcaggaagctcagtccaaaccaaccaaccaaccaaccaaccaaccaaaca
aacaaacaaacaaaaaccacacaccatggacagggggggtatgtaagaag
gtgcaccactagctgtagagttctctcatttggtagctgtagggagaggg
aatgtcaatttcctttaagtttatatcactggacctgtaaagctctcagt
ctgaaccacaaaccaaataacatatatgggttggacctaagactacccac
acatatttagcagatgtgcagcttggtcttcatgtgggtcctgaatgact
ggagctggggctaagccagaagctgtttcctgtgaatgggatatgttctt
caagctgccttgtctggcctcagtgggagagaaaatgcctaaccctgcag
agacttgatgtgctaggatgggaggataccagggaaactccacccactca
gtggaaaaggaagagggaagaagattgtgggataggtgactggaaggggt
gcagtgagtgggatataaagtgaataagtaaaaattaaaattaaattaaa
ttaaaaaagagtctatcccttgttaagctgaccacagaacactgaaaagc
tacttatccaagtaaataggcagtacacattgaattttgtaggttacaaa
gaaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaggaagga
agggaggatggaaagaaagaaagaaggaaagaaagaaagaaggaatgaaa
gtaagaagatagaagaagaaagataagaaagaaacgaaagaaagatcgaa
agaaagaaaatatagatagatttgaatggaatgaatgcaaggatgaaaag
aaaggaaagaagagaattttctttcgttgagggacagaaaacttggagga
gttgagggaaagtaatttatcaaaaccttgtgccaaatcttccagaacca
taccagaaaaagccttaaatgaagtgtata
gaattcacacagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttcccagctgaggagttctgaatccaggctggatccttc
tcagcagtctgttttacgggaacctttatgaccgtgacccgcagttctgg
ttccggaatgagggatcttccttgcgccggtgatggtaaccgtcccgggt
tttctcatcccaggatttctcgtctcgggtttcagcaccaactcttacac
gcgttcacgaccggccaggaagaacacagcaaaccagaatcttctgcggc
aaaactttattgcttacatcttcaggagcaagagtgcaagagagagaatg
gcgaaaccccgtcccttttaagaagaattattctccgcctaggacgtatt
actccttgattagctgcagcccatcggccgagttgtcgtcacggggaagg
cagagcacatggggtggaaaactacccttggcacatgcgcagattatttg
tttaccacttagaacacaggatgtcagcgccatcttgcaacggcgaatgt
gagggtggcttcctacaaatacctaataaaaaaagaaattaaaaaaagaa
tctccccaaaaaagaacccccccaaaaaaagatggagcacagggccccca
atggagaagctatagacagcacccatggggctgaaggggtctacaaccct
ataggtggaacaacaatatgaaataactggtaccccccccccccagagct
catatctctagctgcatatgtagcaatagttgccatagtcggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88915676_88916401
seq2: B6Ng01-139A09.g_134_860

seq1  GCTGAGGAGTTCTGAATCCAGGCTGGATCCTTCTCAGCAGTCTGTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAGTTCTGAATCCAGGCTGGATCCTTCTCAGCAGTCTGTTTTAC  50

seq1  GGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATC  100

seq1  TTCCTTGCGCCGGTGATGGTAACCGTCCCGGGTTTTCTCATCCCAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCGCCGGTGATGGTAACCGTCCCGGGTTTTCTCATCCCAGGATT  150

seq1  TCTCGTCTCGGGTTTCAGCACCAACTCTTACACGCGTTCACGACCGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTCTCGGGTTTCAGCACCAACTCTTACACGCGTTCACGACCGGCCA  200

seq1  GGAAGAACACAGCAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACACAGCAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTAC  250

seq1  ATCTTCAGGAGCAAGAGTGCAAGAGAGAGAATGGCGAAACCCCGTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGAGCAAGAGTGCAAGAGAGAGAATGGCGAAACCCCGTCCCTT  300

seq1  TTAAGAAGAATTATTCTCCGCCTAGGACGTATTACTCCTTGATTAGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAATTATTCTCCGCCTAGGACGTATTACTCCTTGATTAGCTGC  350

seq1  AGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGG  400

seq1  AAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACAC  450

seq1  AGGATGTCAGCGCCATCTTGCAACGGCGAATGTGAGGGTGGCTTCCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCAGCGCCATCTTGCAACGGCGAATGTGAGGGTGGCTTCCTACA  500

seq1  AATACCTAATAAAAAAAGAAATTAAAAAAAGAATCTCCCCAAAAAAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTAATAAAAAAAGAAATTAAAAAAAGAATCTCCCCAAAAAAGAAC  550

seq1  CCCCCCAAAAAAAGATGGAGCACAGGGCCCCCAATGGAGAAGCTATAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAAAAAAAGATGGAGCACAGGGCCCCCAATGGAGAAGCTATAGAC  600

seq1  AGCACCCATGGGGCTGAAGGGGTCTACAACCCTATAGGTGGAACAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCATGGGGCTGAAGGGGTCTACAACCCTATAGGTGGAACAACAAT  650

seq1  ATGAAATAACTGGTA-CCCCCCCCCCCAGAGCTCATATCTCTAGCTGCAT  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAAATAACTGGTACCCCCCCCCCCCAGAGCTCATATCTCTAGCTGCAT  700

seq1  ATGTAGCAATAGTTGCCATAGTCGGCC  726
      |||||||||||||||||||||||||||
seq2  ATGTAGCAATAGTTGCCATAGTCGGCC  727