BAC Information

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BAC

Clone NameB6Ng01-139G23
Chromosome13 (Build37)
Map Location 101,855,745 - 102,084,450
singlet/doubletdoublet
Overlap gene4933416M06Rik
Upstream geneBdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream geneLOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139G23.bB6Ng01-139G23.g
ACCDH938416DH938417
length401581
definitionDH938416|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G23, 5' end.DH938417|Mus musculus domesticus DNA, BAC clone: B6Ng01-139G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,084,044 - 102,084,450)(101,855,745 - 101,856,281)
sequence
caccattctctctcctcccaaaaagtggaaggcccaaaatgtgccaatgt
cccaactgcttctaaaaagttgaactagcatgggcatttctacatgcccc
tcacactcctgagatagagggacaggatggagccaggcctagcagaggat
agattcaagagtaggaatgagcacaagctcaggccaagagtctattgtgg
caccaggacataacaactggtcatcagaaaagtccctgggcttggtgcca
caaaaactctaaagttcaaagtccctactatcacctctagaccctaccat
tttccagacactggaccttagccttgtccaccactgcaaatatactatat
ctgtaaactgcttaatatatggccagaattgaaatgtgtgtgtgtgtgtg
t
gaattcatcctgcttcacatgagtcgtctgattctggttgggatgtgaac
caatacagtcacataataaattttacttttaattggaacctctataggtt
ataattatttttgtccaagaaggtatacagtgttgctgcaccttttacca
aaagaagaactttgtatctgaccagagaaggcagagttaaatttctaaat
cctgaacattttggttaaagacccttgacttggtgtggtgctttgttggc
ccccatagattcatgtgtttgaatgtttggcccatagggagtggcactat
acggaggtatggccttgttggagtaggtgtggtttgttggagtaagtata
tcactgtgagggtaggctttgaggtctcctattcttaagttctgcccagt
gtggcacacagtctcctcctggctgtctgcagatcaagatgtagaactct
gagctccttctccagcaccatgtctgtcttaatgctgccattcttcccac
cattctgattagagattaaaactctaaaaccataagttaccctcaattaa
atgttttcctttataagagttaccttggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102084044_102084450
seq2: B6Ng01-139G23.b_47_453 (reverse)

seq1  ACACACACACACACACATTTCAATTCTGGCCATATATTAAGCAGTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACATTTCAATTCTGGCCATATATTAAGCAGTTTACA  50

seq1  GATATAGTATATTTGCAGTGGTGGACAAGGCTAAGGTCCAGTGTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTATATTTGCAGTGGTGGACAAGGCTAAGGTCCAGTGTCTGGAA  100

seq1  AATGGTAGGGTCTAGAGGTGATAGTAGGGACTTTGAACTTTAGAGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGGGTCTAGAGGTGATAGTAGGGACTTTGAACTTTAGAGTTTTT  150

seq1  GTGGCACCAAGCCCAGGGACTTTTCTGATGACCAGTTGTTATGTCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCAAGCCCAGGGACTTTTCTGATGACCAGTTGTTATGTCCTGGT  200

seq1  GCCACAATAGACTCTTGGCCTGAGCTTGTGCTCATTCCTACTCTTGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAATAGACTCTTGGCCTGAGCTTGTGCTCATTCCTACTCTTGAATC  250

seq1  TATCCTCTGCTAGGCCTGGCTCCATCCTGTCCCTCTATCTCAGGAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTGCTAGGCCTGGCTCCATCCTGTCCCTCTATCTCAGGAGTGTG  300

seq1  AGGGGCATGTAGAAATGCCCATGCTAGTTCAACTTTTTAGAAGCAGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATGTAGAAATGCCCATGCTAGTTCAACTTTTTAGAAGCAGTTGG  350

seq1  GACATTGGCACATTTTGGGCCTTCCACTTTTTGGGAGGAGAGAGAATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGCACATTTTGGGCCTTCCACTTTTTGGGAGGAGAGAGAATGGT  400

seq1  GGAATTC  407
      |||||||
seq2  GGAATTC  407

seq1: chr13_101855745_101856281
seq2: B6Ng01-139G23.g_66_602

seq1  GAATTCATCCTGCTTCACATGAGTCGTCTGATTCTGGTTGGGATGTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGCTTCACATGAGTCGTCTGATTCTGGTTGGGATGTGAAC  50

seq1  CAATACAGTCACATAATAAATTTTACTTTTAATTGGAACCTCTATAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGTCACATAATAAATTTTACTTTTAATTGGAACCTCTATAGGTT  100

seq1  ATAATTATTTTTGTCCAAGAAGGTATACAGTGTTGCTGCACCTTTTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTTTTGTCCAAGAAGGTATACAGTGTTGCTGCACCTTTTACCA  150

seq1  AAAGAAGAACTTTGTATCTGACCAGAGAAGGCAGAGTTAAATTTCTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAACTTTGTATCTGACCAGAGAAGGCAGAGTTAAATTTCTAAAT  200

seq1  CCTGAACATTTTGGTTAAAGACCCTTGACTTGGTGTGGTGCTTTGTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACATTTTGGTTAAAGACCCTTGACTTGGTGTGGTGCTTTGTTGGC  250

seq1  CCCCATAGATTCATGTGTTTGAATGTTTGGCCCATAGGGAGTGGCACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGATTCATGTGTTTGAATGTTTGGCCCATAGGGAGTGGCACTAT  300

seq1  ACGGAGGTATGGCCTTGTTGGAGTAGGTGTGGTTTGTTGGAGTAAGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGTATGGCCTTGTTGGAGTAGGTGTGGTTTGTTGGAGTAAGTATA  350

seq1  TCACTGTGAGGGTAGGCTTTGAGGTCTCCTATTCTTAAGTTCTGCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGAGGGTAGGCTTTGAGGTCTCCTATTCTTAAGTTCTGCCCAGT  400

seq1  GTGGCACACAGTCTCCTCCTGGCTGTCTGCAGATCAAGATGTAGAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACAGTCTCCTCCTGGCTGTCTGCAGATCAAGATGTAGAACTCT  450

seq1  GAGCTCCTTCTCCAGCACCATGTCTGTCTTAATGCTGCCATGCTTCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGCTCCTTCTCCAGCACCATGTCTGTCTTAATGCTGCCATTCTTCCCAC  500

seq1  CATTCTGATTAGAGATTAAAACTCTAAAACCATAAGT  537
      |||||||||||||||||||||||||||||||||||||
seq2  CATTCTGATTAGAGATTAAAACTCTAAAACCATAAGT  537