BAC Information

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BAC

Clone NameB6Ng01-139I11
Chromosome13 (Build37)
Map Location 41,489,275 - 41,641,705
singlet/doubletdoublet
Overlap geneNedd9
Upstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659
Downstream geneEG621976, EG328231, 9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I11.bB6Ng01-139I11.g
ACCDH938488DH938489
length946998
definitionDH938488|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I11, 5' end.DH938489|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,489,275 - 41,489,936)(41,640,689 - 41,641,705)
sequence
gaattctcaaataaagtccaagaatgccttagggagtatactttggttta
ttgaatatggtttagataatttgtattattttaaaatggtagtagagtaa
cacagaatactcgagtactgaaggggaaaactgagcttctagggctgtgc
tatgctgattgcagccttcagaaaggaattggagaggtgccatactagca
atttaacagcacacctgaaaactctagaacaaaaagaagcaaacacaccc
aaggagagtagacaggaggaaatagtcaaacccaaggctgacgcaaccaa
ttagaaacaaagagaacaatataatgaatcaacaaaaccaagagctggct
ctttgaaaaaaaaatcaacaagatagacaaatccttaaccaaactaacta
aaaggcacagagacaggatccagattaacaaaatcagaaataaaaaggga
gacataacaacagacactgaagaaattaaacaaaacaaaacaaaacaaaa
aaacaaaacaaaccattaggtcttacttcaaaagcctgtattccacaaag
ctggaaaatctatacaaaatggatcattttctagacagacaccgctacta
atgttaaatcaagatcaggtaaagtaggaccagccactagaacatgtact
aggggccatatcctaaggagcagtcattaaaagtctcccaaccaaataaa
gtccaggaccagatgagtttagtgcagaattcttttatttatttatttat
tatatgtaagtgcactgtagctgtcttcagacactccagaagagggcatc
agatttcattacggatggttgtgagccaccatgtgggttgctaggatttg
aactcagacctttagaagaacagtcagcactcttaactgctgagccatct
caccatcacccaagtgcagaattgtataagactttcaaagaagagc
gaattctcactaccaaccacaatccactgttggcttcacagttaataccc
tggctcatggtgcttggtttcatgtctaaaataggaacacactccctagc
attctatggtgctcagtagctaagaagagtgctctccagaacttaagatg
caaattctttctgcctgcttttgtatcgcagttgaagggcagttataggt
cggttggcgtaaggagcaaacatgttctggaacaaacatgatctgaagca
atcgctataagagatttctccgtactcccaaggaggtgcctgtttgttca
agaaaagatgtcagaaaacttaaacccaacacacagaaagagacttggct
gtggatcttcagaggcataagattgatacatttccaggcatgacagcctt
ccctacccccaattaatatttatattcacaagtgcctgatcctgtatgct
acttagctagggttggacacccattttatcatctcaggtcataaacaaga
aaagaactgagaaaagtaatgtataatgtactcgtccatccctgctttct
gaactccattgctgttaactacctgcaggatgtggtctttgatgatgtgg
gtgacaagatatttggtgcccaggtgtgggaacagaattcatcttacagt
cagttccagactttcctaggtttggttgagcttgccctgtcattggacag
ggcgactgaaaagcaaccattcgccgcacacctcacccagaaaacaaatt
gagagcttacacttttcccgtaaagagaaacattacaagaaagcaatttg
agtagtaaaaagaaaagaaatgaaaagaaagggaaaaaaaccttatgaaa
atgtgttctttctatacatgtacacaaatgtaggtagagcctatgtgtgt
tctctggtctctgtgaagtaccctcgtcttccctttagggtgtacatctc
tcccatcccatggtatctcaggtcacaatccactatcatgcatggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41489275_41489936
seq2: B6Ng01-139I11.b_47_708

seq1  GAATTCTCAAATAAAGTCCAAGAATGCCTTAGGGAGTATACTTTGGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATAAAGTCCAAGAATGCCTTAGGGAGTATACTTTGGTTTA  50

seq1  TTGAATATGGTTTAGATAATTTGTATTATTTTAAAATGGTAGTAGAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATGGTTTAGATAATTTGTATTATTTTAAAATGGTAGTAGAGTAA  100

seq1  CACAGAATACTCGAGTACTGAAGGGGAAAACTGAGCTTCTAGGGCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATACTCGAGTACTGAAGGGGAAAACTGAGCTTCTAGGGCTGTGC  150

seq1  TATGCTGATTGCAGCCTTCAGAAAGGAATTGGAGAGGTGCCATACTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATTGCAGCCTTCAGAAAGGAATTGGAGAGGTGCCATACTAGCA  200

seq1  ATTTAACAGCACACCTGAAAACTCTAGAACAAAAAGAAGCAAACACACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAGCACACCTGAAAACTCTAGAACAAAAAGAAGCAAACACACCC  250

seq1  AAGGAGAGTAGACAGGAGGAAATAGTCAAACCCAAGGCTGACGCAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGTAGACAGGAGGAAATAGTCAAACCCAAGGCTGACGCAACCAA  300

seq1  TTAGAAACAAAGAGAACAATATAATGAATCAACAAAACCAAGAGCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACAAAGAGAACAATATAATGAATCAACAAAACCAAGAGCTGGCT  350

seq1  CTTTGAAAAAAAAATCAACAAGATAGACAAATCCTTAACCAAACTAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAAAAAAATCAACAAGATAGACAAATCCTTAACCAAACTAACTA  400

seq1  AAAGGCACAGAGACAGGATCCAGATTAACAAAATCAGAAATAAAAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACAGAGACAGGATCCAGATTAACAAAATCAGAAATAAAAAGGGA  450

seq1  GACATAACAACAGACACTGAAGAAATTAAACAAAACAAAACAAAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAACAACAGACACTGAAGAAATTAAACAAAACAAAACAAAACAAAA  500

seq1  AAACAAAACAAACCATTAGGTCTTACTTCAAAAGCCTGTATTCCACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAACCATTAGGTCTTACTTCAAAAGCCTGTATTCCACAAAG  550

seq1  CTGGAAAATCTATACAAAATGGATCATTTTCTAGACAGACACCGCTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAATCTATACAAAATGGATCATTTTCTAGACAGACACCGCTACTA  600

seq1  ATGTTAAATCAAGATCAGGTAAAGTAGGACCAGCCACTAGAACATGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATCAAGATCAGGTAAAGTAGGACCAGCCACTAGAACATGTACT  650

seq1  AGGGGCCATATC  662
      ||||||||||||
seq2  AGGGGCCATATC  662

seq1: chr13_41640689_41641705
seq2: B6Ng01-139I11.g_69_1066 (reverse)

seq1  TAGCCATGACAATGATTAGTGGGATTGTGACCCCTGAGATTACCAATGGG  50
      ||||||||   |||| |||| |||||||||  ||||||| |||| |||||
seq2  TAGCCATG--CATGA-TAGT-GGATTGTGA--CCTGAGA-TACC-ATGGG  42

seq1  ATTGGGGAGAGATGTACACCCCTAAAGGGAAGACGAGGGGTTACTTCACA  100
      ||  |||||||||||||| ||||||||||||||||||||  |||||||||
seq2  AT--GGGAGAGATGTACA-CCCTAAAGGGAAGACGAGGG--TACTTCACA  87

seq1  GAGACCAGGAGAACACACATAGGCTCTACCTACATTTGTGTACATGTATA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCA-GAGAACACACATAGGCTCTACCTACATTTGTGTACATGTATA  136

seq1  GAAAGAACACATTTTTCATAAGGTTTTTTTTCCCCTTTTCTTTTCATTTC  200
      ||||||||||| ||||||||||||||||||   || ||||||||||||||
seq2  GAAAGAACACA-TTTTCATAAGGTTTTTTT---CCCTTTCTTTTCATTTC  182

seq1  TTTTCTTTTTACTACTCAAATTGCTTTCTTTGTAATGTTTCTCTTTACGG  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTCTTTTTACTACTCAAATTGCTTTC-TTGTAATGTTTCTCTTTACGG  231

seq1  GAAAAGTGTAAGCTCTCAATTTGTTTTCTGGGTGAGGTGTGCGGCGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTAAGCTCTCAATTTGTTTTCTGGGTGAGGTGTGCGGCGAATG  281

seq1  GTTGCTTTTCAGTCGCCCTGTCCAATGACAGGGCAAGCTCAACCAAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTCAGTCGCCCTGTCCAATGACAGGGCAAGCTCAACCAAACCT  331

seq1  AGGAAAGTCTGGAACTGACTGTAAGATGAATTCTGTTCCCACACCTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTCTGGAACTGACTGTAAGATGAATTCTGTTCCCACACCTGGGC  381

seq1  ACCAAATATCTTGTCACCCACATCATCAAAGACCACATCCTGCAGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATATCTTGTCACCCACATCATCAAAGACCACATCCTGCAGGTAGT  431

seq1  TAACAGCAATGGAGTTCAGAAAGCAGGGATGGACGAGTACATTATACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAATGGAGTTCAGAAAGCAGGGATGGACGAGTACATTATACATT  481

seq1  ACTTTTCTCAGTTCTTTTCTTGTTTATGACCTGAGATGATAAAATGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCAGTTCTTTTCTTGTTTATGACCTGAGATGATAAAATGGGTG  531

seq1  TCCAACCCTAGCTAAGTAGCATACAGGATCAGGCACTTGTGAATATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCTAGCTAAGTAGCATACAGGATCAGGCACTTGTGAATATAAAT  581

seq1  ATTAATTGGGGGTAGGGAAGGCTGTCATGCCTGGAAATGTATCAATCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGGGGGTAGGGAAGGCTGTCATGCCTGGAAATGTATCAATCTTA  631

seq1  TGCCTCTGAAGATCCACAGCCAAGTCTCTTTCTGTGTGTTGGGTTTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGAAGATCCACAGCCAAGTCTCTTTCTGTGTGTTGGGTTTAAGT  681

seq1  TTTCTGACATCTTTTCTTGAACAAACAGGCACCTCCTTGGGAGTACGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACATCTTTTCTTGAACAAACAGGCACCTCCTTGGGAGTACGGAG  731

seq1  AAATCTCTTATAGCGATTGCTTCAGATCATGTTTGTTCCAGAACATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTATAGCGATTGCTTCAGATCATGTTTGTTCCAGAACATGTTT  781

seq1  GCTCCTTACGCCAACCGACCTATAACTGCCCTTCAACTGCGATACAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTACGCCAACCGACCTATAACTGCCCTTCAACTGCGATACAAAAG  831

seq1  CAGGCAGAAAGAATTTGCATCTTAAGTTCTGGAGAGCACTCTTCTTAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGAAAGAATTTGCATCTTAAGTTCTGGAGAGCACTCTTCTTAGCT  881

seq1  ACTGAGCACCATAGAATGCTAGGGAGTGTGTTCCTATTTTAGACATGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACCATAGAATGCTAGGGAGTGTGTTCCTATTTTAGACATGAAA  931

seq1  CCAAGCACCATGAGCCAGGGTATTAACTGTGAAGCCAACAGTGGATTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACCATGAGCCAGGGTATTAACTGTGAAGCCAACAGTGGATTGTG  981

seq1  GTTGGTAGTGAGAATTC  1017
      |||||||||||||||||
seq2  GTTGGTAGTGAGAATTC  998