BAC Information

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BAC

Clone NameB6Ng01-140P11
Chromosome13 (Build37)
Map Location 40,838,404 - 41,006,920
singlet/doubletdoublet
Overlap geneEG621629, EG637157, LOC100039105, Gcnt2
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894, LOC100039048, Tcfap2a
Downstream genePak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140P11.bB6Ng01-140P11.g
ACCDH939556DH939557
length1,1221,129
definitionDH939556|Mus musculus domesticus DNA, BAC clone: B6Ng01-140P11, 5' end.DH939557|Mus musculus domesticus DNA, BAC clone: B6Ng01-140P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,005,780 - 41,006,920)(40,838,404 - 40,839,568)
sequence
gaattcattgaccatcttctgaagcctaccagaggccctttgcgcagggc
ctaggacccacatatgtttttgttgctaagacagagtctctggcatccca
ggttggccttgaactcactaagtagccaaggatgagtttctatttctgat
ccatttgcctatatcttctaagggctaggaatacagtcatgagccaacct
tgcctggacaagtactctaccaactgagctatatcccccggacctctcta
gagtcttaaataagaaaaatcaaggtggcgcacgcctttaatcccagcac
tcgggaggcaaaggcaggcagatttctgagtttgaggctagcctggtcta
caaagtgagttccaggacagccagggctatacagagaaacactgtctcaa
aaaacaaacaaacaaacaaacaaacaaaagaaagaaaccaaaaaattcta
gtaagttaagcttgtttttaactactaccaacaacaacaacaacacccca
caatactgaaatatatctaataatttttttgtgtggtgctgagcaacgaa
ccgcagcatgctagggaaacagcctaccactgagctcctcctcagccctg
ctgtattttttaactaatcatttttgtgcttaggagagtaaggctggggc
tggagagatggctcagtggttagaagcactgactgctcttccagaggtcc
tgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgg
gattcgatgccctcttccagtgtgtctgaaggcagctagctacagtgtag
tcatataaataaagaaaataagtatttaagggagagaggggagaggcttg
tgtcatctagaaaactcacaattgtgaccaaacatttttctttcaaaaaa
ttctaggcaatatgctcatcatgccattatcagtcaacaagttctttcta
aagggccagggagtaaatgtttaagctcgtgatactcatcattcatctct
gtgtcactccacactgatgcttgagcacaaatgtgactagaccactgcga
ctgttttgcagcagctgaaggtgggactaaatccaaagtaacttacttca
ttcacgagcagctttctgttct
gaattcttcctttcagactgctttgtcggtcttggtattacttttcagaa
ctcactataactaacacttgagtttgtacctgagcattcaaaattgtttc
ctgacttaccacccccacccctggcatttctaaacccccccccatcataa
tccatgaagcatacacatccacatttgggagtttgaactcctgtgcgtac
aagccaccctaaattggggagtcttggcgcctgttacccgagtctgaaat
gtctgtggccattagactttaagagatcatgttgggtcctaaaagaccag
cctgagtccagaggggcaaagggagttagaagtttgcctcagatctggct
ggaagaatttccagtgtggaattctcacttgtacttgttgaaggcctggg
caaagctgtgtcaccctttacaactcccaaacagctcctgaaagcagagt
ccaggctaggcttgagtcttggtgcaagagctctgtcgcatgtgacaggg
tgtttgtcaggggcttgggaattaacagggtcttcaaaagcccaaggtgg
gatgaccctaaacccttcccccagctaaaaagctttccagggagcaaaga
aagaccaaaagagccttggctttgctctacaaggaggtcacctggagagt
tccctcggtttgatacccaggcagctttctggtgcaattacataagaatg
tccctgagaagggatgaagcaaaaatcttccaaggggatttaactccaag
acacttgcctagcatagggaaaggccttgggtttgatccccagttgtgaa
gaagaataaaacgacaatacgggcactgccagcctgcaagctttcagggg
aaagtcagtatcagctgggaacttgtaaactctcagatgccacactgttg
aatgttgtgagaattgggcccggctatggatatttttactaagtgctttg
tttgcttgctccactcttggaacatttttaagaaaatattttcgattttt
tagtgtgttttctgtcttcgagtttagagtgatagttattgtgagcagtc
catgaggtttggcactgatcaaggtccttgcagggacaaggtcatcctgt
gccactttaaactgaggctatcttatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41005780_41006920
seq2: B6Ng01-140P11.b_46_1167 (reverse)

seq1  AGAACAGAAAGACTGCTTCGTGGCATGAAGTTATGTTACTTTGGGATTTT  50
      ||||||||||| |||| |||| | |||||| || |||||||| |||||| 
seq2  AGAACAGAAAG-CTGC-TCGT-GAATGAAG-TAAGTTACTTT-GGATTT-  44

seq1  AGGGTCCCACCTCCAGCTTGCTGCAAAACAGTCGCAGTGTGTCTTAGTCA  100
         ||||||||| |||| ||||||||||||||||||||| ||| ||||||
seq2  --AGTCCCACCTTCAGC-TGCTGCAAAACAGTCGCAGTG-GTC-TAGTCA  89

seq1  CATTTGTGCTACAAGCATCAGTGTGGAGTGACACCAAGAGAATGAATGAA  150
      |||||||||| |||||||||||||||||||||||  |||| ||||||| |
seq2  CATTTGTGCT-CAAGCATCAGTGTGGAGTGACAC--AGAG-ATGAATG-A  134

seq1  TGAGTTATCCACGAGCTTAAAACATTTACTCCCTGGCCCTTTTAGAAAGA  200
      |||| ||| ||||||||| |||||||||||||||||||| ||||||||||
seq2  TGAG-TAT-CACGAGCTT-AAACATTTACTCCCTGGCCC-TTTAGAAAGA  180

seq1  ACTTTGTTGACTGATAATGGCATGATGGGCATATTTGCCTAGAATTTTTT  250
      || |||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  AC-TTGTTGACTGATAATGGCATGATGAGCATA-TTGCCTAGAATTTTTT  228

seq1  GAA--GAAAATGTTTGGTCACAATTGTGAGTTTTCTAGATGACACAAGCC  298
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAATGTTTGGTCACAATTGTGAGTTTTCTAGATGACACAAGCC  278

seq1  TCT-CCCTCTCTCCCTTAAATACTTATTTTCTTTATTTATATGACTACAC  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCTCTCCCTTAAATACTTATTTTCTTTATTTATATGACTACAC  328

seq1  TGTAGCTAGCTGCCTTCAGACACACTGGAAGAGGGCATCGAATCCCATTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTAGCTGCCTTCAGACACACTGGAAGAGGGCATCGAATCCCATTA  378

seq1  CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  428

seq1  CTGGAAGAGCAGTCAGTGCTTCTAACCACTGAGCCATCTCTCCAGCCCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGCAGTCAGTGCTTCTAACCACTGAGCCATCTCTCCAGCCCCA  478

seq1  GCCTTACTCTCCTAAGCACAAAAATGATTAGTTAAAAAATACAGCAGGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTCTCCTAAGCACAAAAATGATTAGTTAAAAAATACAGCAGGGC  528

seq1  TGAGGAGGAGCTCAGTGGTAGGCTGTTTCCCTAGCATGCTGCGGTTCGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAGCTCAGTGGTAGGCTGTTTCCCTAGCATGCTGCGGTTCGTT  578

seq1  GCTCAGCACCACACAAAAAAATTATTAGATATATTTCAGTATTGTGGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCACCACACAAAAAAATTATTAGATATATTTCAGTATTGTGGGGT  628

seq1  GTTGTTGTTGTTGTTGGTAGTAGTTAAAAACAAGCTTAACTTACTAGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTGGTAGTAGTTAAAAACAAGCTTAACTTACTAGAAT  678

seq1  TTTTTGGTTTCTTTCTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTCTTTCTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGAGA  728

seq1  CAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  778

seq1  AGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTTTGCCTCCCGAGTGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTTTGCCTCCCGAGTGCTG  828

seq1  GGATTAAAGGCGTGCGCCACCTTGATTTTTCTTATTTAAGACTCTAGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGCGCCACCTTGATTTTTCTTATTTAAGACTCTAGAGA  878

seq1  GGTCCGGGGGATATAGCTCAGTTGGTAGAGTACTTGTCCAGGCAAGGTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGGGGGATATAGCTCAGTTGGTAGAGTACTTGTCCAGGCAAGGTTG  928

seq1  GCTCATGACTGTATTCCTAGCCCTTAGAAGATATAGGCAAATGGATCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGACTGTATTCCTAGCCCTTAGAAGATATAGGCAAATGGATCAGA  978

seq1  AATAGAAACTCATCCTTGGCTACTTAGTGAGTTCAAGGCCAACCTGGGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACTCATCCTTGGCTACTTAGTGAGTTCAAGGCCAACCTGGGAT  1028

seq1  GCCAGAGACTCTGTCTTAGCAACAAAAACATATGTGGGTCCTAGGCCCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACTCTGTCTTAGCAACAAAAACATATGTGGGTCCTAGGCCCTG  1078

seq1  CGCAAAGGGCCTCTGGTAGGCTTCAGAAGATGGTCAATGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAGGGCCTCTGGTAGGCTTCAGAAGATGGTCAATGAATTC  1122

seq1: chr13_40838404_40839568
seq2: B6Ng01-140P11.g_70_1198

seq1  GAATTCTTCCTTTCAGACTGCTTTGTCGGTCTTGGTATTACTTTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTCAGACTGCTTTGTCGGTCTTGGTATTACTTTTCAGAA  50

seq1  CTCACTATAACTAACACTTGAGTTTGTACCTGAGCATTCAAAATTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATAACTAACACTTGAGTTTGTACCTGAGCATTCAAAATTGTTTC  100

seq1  CTGACTTACCACCCCCACCCCTGGCATTTCTAAACCCCCCCCCATCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTACCACCCCCACCCCTGGCATTTCTAAACCCCCCCCCATCATAA  150

seq1  TCCATGAAGCATACACATCCACATTTGGGAGTTTGAACTCCTGTGCGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGCATACACATCCACATTTGGGAGTTTGAACTCCTGTGCGTAC  200

seq1  AAGCCACCCTAAATTGGGGAGTCTTGGCGCCTGTTACCCGAGTCTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCCTAAATTGGGGAGTCTTGGCGCCTGTTACCCGAGTCTGAAAT  250

seq1  GTCTGTGGCCATTAGACTTTAAGAGATCATGTTGGGTCCTAAAAGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGCCATTAGACTTTAAGAGATCATGTTGGGTCCTAAAAGACCAG  300

seq1  CCTGAGTCCAGAGGGGCAAAGGGAGTTAGAAGTTTGCCTCAGATCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCCAGAGGGGCAAAGGGAGTTAGAAGTTTGCCTCAGATCTGGCT  350

seq1  GGAAGAATTTCCAGTGTGGAATTCTCACTTGTACTTGTTGAAGGCCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATTTCCAGTGTGGAATTCTCACTTGTACTTGTTGAAGGCCTGGG  400

seq1  CAAAGCTGTGTCACCCTTTACAACTCCCAAACAGCTCCTGAAAGCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGTGTCACCCTTTACAACTCCCAAACAGCTCCTGAAAGCAGAGT  450

seq1  CCAGGCTAGGCTTGAGTCTTGGTGCAAGAGCTCTGTCGCATGTGACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAGGCTTGAGTCTTGGTGCAAGAGCTCTGTCGCATGTGACAGGG  500

seq1  TGTTTGTCAGGGGCTTGGGAATTAACAGGGTCTTCAAAAGCCCAAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCAGGGGCTTGGGAATTAACAGGGTCTTCAAAAGCCCAAGGTGG  550

seq1  GATGACCCTAAACCCTTCCCCCAGCTAAAAAGCTTTCCAGGGAGCAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCCTAAACCCTTCCCCCAGCTAAAAAGCTTTCCAGGGAGCAAAGA  600

seq1  AAGACCAAAAGAGCCTTGGCTTTGCTCTACAAGGAGGTCACCTGGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAAAGAGCCTTGGCTTTGCTCTACAAGGAGGTCACCTGGAGAGT  650

seq1  TCCCTCGGTTTGATACCCAGGCAGCTTTCTGGTGCAATTACATAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGGTTTGATACCCAGGCAGCTTTCTGGTGCAATTACATAAGAATG  700

seq1  TCCCTGAGAAGGGATGAAGCAAAAATCTTCCAAGGGGATTTAACTCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGAAGGGATGAAGCAAAAATCTTCCAAGGGGATTTAACTCCAAG  750

seq1  ACACTTGCCTAGCATAGGG-AAGGCCTTGGGTTTGATCCCCAGTACTGAA  799
      ||||||||||||||||||| ||||||||||||||||||||||||  ||||
seq2  ACACTTGCCTAGCATAGGGAAAGGCCTTGGGTTTGATCCCCAGTTGTGAA  800

seq1  GAAGAATAAAACGACAATACGGGCACTGCCAGCCTGCAAGCTTTCCAGGG  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAGAATAAAACGACAATACGGGCACTGCCAGCCTGCAAGCTTT-CAGGG  849

seq1  GAAAGTCAGTATCAGCTGGGAACTTGTAAACTCTCAGATGCCACACTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCAGTATCAGCTGGGAACTTGTAAACTCTCAGATGCCACACTGTT  899

seq1  GAATGTTGTGAGAATTGGGCCCGGCTATGGATATTTTTAACTAAGTTGCT  949
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GAATGTTGTGAGAATTGGGCCCGGCTATGGATATTTTT-ACTAAG-TGCT  947

seq1  TTGTTTGCCTTGCTCCACTCTTGGAACAATTTTTAAAGAAAATATTTTCG  999
      ||||||| ||||||||||||||||||||  |||| |||||||||||||||
seq2  TTGTTTG-CTTGCTCCACTCTTGGAACA--TTTTTAAGAAAATATTTTCG  994

seq1  ATTTTTTTTAAGTGTGTATCCTGTCTTCGAAGGTGTAGAAGCCAGAATAG  1049
      |||||||   ||||||| | ||||||||||  || ||||       ||| 
seq2  ATTTTTT---AGTGTGTTTTCTGTCTTCGA--GTTTAGA----GTGATA-  1034

seq1  GTTATTGTGAGCAGCCCAATGAGGGTGTGAGCACCAGATCCAGGGTCCTT  1099
      |||||||||||||| || |||| ||| || ||| | ||| || ||||| |
seq2  GTTATTGTGAGCAGTCC-ATGA-GGTTTG-GCA-CTGAT-CAAGGTCC-T  1078

seq1  TGCAGGAGCAACAAGTGCTCCCAACCACTGTGCCAACTTTTAAAATCTGA  1149
      ||||||    |||||  |  |      ||||||| |||||   || ||||
seq2  TGCAGG---GACAAGGTCATC------CTGTGCC-ACTTT---AAACTGA  1115

seq1  GGCTACTCTTTATCTT  1165
      ||||| || |||||||
seq2  GGCTA-TC-TTATCTT  1129