BAC Information

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BAC

Clone NameB6Ng01-142A04
Chromosome13 (Build37)13 (Build37)
Map Location 61,898,117 - 61,899,23962,588,722 - 62,589,440
singlet/doubletsingletsinglet
Overlap geneBC052688
Upstream gene2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332
Downstream geneEG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142A04.bB6Ng01-142A04.g
ACCDH940318DH940319
length1,0971,103
definitionDH940318|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A04, 5' end.DH940319|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,898,117 - 61,899,239)(62,588,722 - 62,589,440)
sequence
gaattctgcccaccttgcctctagattaccagcattataggtgggcatgt
cacagctagataaatcagtccttttaagtggcttaataaggatgagtggc
tgaatctctctggttagggtggctaggacatagtctgtggtcttagctct
actaacagaagtcaatcatgaaatgcagccctcctgcctttaactccact
gtctttcaaattaagagcactattgttttgctttatcataacatctgtta
taagtcaccaaaggactagggcagattctgtccttattctatagatggtg
aaactgagccttcgagtgttaagtcaatactgaatagatatgtggaactt
ctcttcttactcatgatgtgtttccaatgacttaatcaatgaaataaaag
caacctcagccagacatgatggcccaggcctgtaatcacagtgcttgaaa
agtggagacagaaagggacaggataaaagagctgataaagttccctcatt
tgacagtacctaatattatcaatgaacactgaggtaatcatttttagatg
cttgataagtatcctgctggtccatttttgggttcaacaccaggcattca
agaaactgcataaaaattgaatttactgaaaaatcaaattaccgtagtta
tactagtcctaacaaaaatagtatctaggtactgattgtggttgtgccta
ataagacaagttttttttttttttttcaagttttaagatgatcctcctga
gagactaggcctgagtaatacttggtgtgctctaatacacttccctcctc
tctggagcacataatcatcaagccttttccacttttaaaactatattttt
ccattatacttacagcattcccaccatctctcttctgtctctgaatttct
tcatagacaatttattgtttttcatgaggatattttccttgacatagtac
tgtttgaatgtgacctatgatttctgcagacttctcactatgaagcaaat
gatgatgacagatatagtgtgatagatgtacacatgatgtaccttgtctg
attgagagaagacatgctctgggactgcaagaattctctaactacaa
gaattcttctatgtgactggaggttactatgttgtgaaaaggctttctca
cattcattacatttgtagggtttcttttcagtatgaattcttctatgtaa
ctggaggttactatgttgtgaaaaggctttctcacattcattacatttga
agggtttctccccagcatgtattcttatatgtatttggagcgtactatgc
ctggaaaagactttgtcacattgattacatttgtagagtttcctcctgta
tgtgttctcttatgtatttggagactatgatgttgggaaaaggctttgtc
acaatgattacatttgtagggtttttctcctgtatgtattcttttatgct
tctggagatcactgctttgtctaaatactttatcacattcattacatttg
tagggtttctctcctgtatgtattcttttatgcttttggagactatgatg
ttggaaaaaggctttgtcacattgatgacatttgtagggtttctctcctg
tatgtattcttttatgcttttggagattacagtgttctgaaaaggcttta
ccacattgatcacatttgtagggtttctctccagtatgaattcttccatg
ccttttaagccgactatgttgtgaaaaggctttaccacacagatcacatt
catagcatttctctccagtatgtgttcctttaggttgtaggagattactg
tgacttgaaaaggctttttcccactgatgacattcataaagtttctctcg
cgtatgaattccttcatagcttttaagatgactgtgatcttcaaaggctt
taccacattgcttccattcatagagtttctttccagtttgtgctctttta
cgaatttggagacgatgttgagcaaaggcttcaactaattggaataattc
caggagggtcatttctgtatgattctttcatgccttggagcatgattgtg
agcataaaaaaagactttatcacattgagtatattcagacgctttctctg
cactctgactcttcatgctgagaaaaaattggcacatggtgaaagcttta
tcacactgatgaatacttttattgtatgattatggtacttttgtctaatt
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61898117_61899239
seq2: B6Ng01-142A04.b_46_1142

seq1  GAATTCTGCCCACCTTGCCTCTAGATTACCAGCATTATAGGTGGGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCACCTTGCCTCTAGATTACCAGCATTATAGGTGGGCATGT  50

seq1  CACAGCTAGATAAATCAGTCCTTTTAAGTGGCTTAATAAGGATGAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTAGATAAATCAGTCCTTTTAAGTGGCTTAATAAGGATGAGTGGC  100

seq1  TGAATCTCTCTGGTTAGGGTGGCTAGGACATAGTCTGTGGTCTTAGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCTCTGGTTAGGGTGGCTAGGACATAGTCTGTGGTCTTAGCTCT  150

seq1  ACTAACAGAAGTCAATCATGAAATGCAGCCCTCCTGCCTTTAACTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAGAAGTCAATCATGAAATGCAGCCCTCCTGCCTTTAACTCCACT  200

seq1  GTCTTTCAAATTAAGAGCACTATTGTTTTGCTTTATCATAACATCTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAAATTAAGAGCACTATTGTTTTGCTTTATCATAACATCTGTTA  250

seq1  TAAGTCACCAAAGGACTAGGGCAGATTCTGTCCTTATTCTATAGATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACCAAAGGACTAGGGCAGATTCTGTCCTTATTCTATAGATGGTG  300

seq1  AAACTGAGCCTTCGAGTGTTAAGTCAATACTGAATAGATATGTGGAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCCTTCGAGTGTTAAGTCAATACTGAATAGATATGTGGAACTT  350

seq1  CTCTTCTTACTCATGATGTGTTTCCAATGACTTAATCAATGAAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTACTCATGATGTGTTTCCAATGACTTAATCAATGAAATAAAAG  400

seq1  CAACCTCAGCCAGACATGATGGCCCAGGCCTGTAATCACAGTGCTTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCAGCCAGACATGATGGCCCAGGCCTGTAATCACAGTGCTTGAAA  450

seq1  AGTGGAGACAGAAAGGGACAGGATAAAAGAGCTGATAAAGTTCCCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGACAGAAAGGGACAGGATAAAAGAGCTGATAAAGTTCCCTCATT  500

seq1  TGACAGTACCTAATATTATCAATGAACACTGAGGTAATCATTTTTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTACCTAATATTATCAATGAACACTGAGGTAATCATTTTTAGATG  550

seq1  CTTGATAAGTATCCTGCTGGTCCATTTTTGGGTTCAACACCAGGCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAGTATCCTGCTGGTCCATTTTTGGGTTCAACACCAGGCATTCA  600

seq1  AGAAACTGCATAAAAATTGAATTTACTGAAAAATCAAATTACCGTAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCATAAAAATTGAATTTACTGAAAAATCAAATTACCGTAGTTA  650

seq1  TACTAGTCCTAACAAAAATAGTATCTAGGTACTGATTGTGGTTGTGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTCCTAACAAAAATAGTATCTAGGTACTGATTGTGGTTGTGCCTA  700

seq1  ATAAGACAAGTTTTTTTTTTTTTTTTCAAGTTTTAAGATGATCCTCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAAGTTTTTTTTTTTTTTTTCAAGTTTTAAGATGATCCTCCTGA  750

seq1  GAGACTAGGCCTGAGTAATACTTGGTGTGCTCTAATACACTTCCCTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGGCCTGAGTAATACTTGGTGTGCTCTAATACACTTCCCTCCTC  800

seq1  TCTGGAGCACATAATCATCAAGCCTTTTCCACTTTTAAAACTATATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGCACATAATCATCAAGCCTTTTCCACTTTTAAAACTATATTTTT  850

seq1  CCATTATACTTACAGCATTCCCACCATCTCTCTTCTGTCTCTGAATTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATACTTACAGCATTCCCACCATCTCTCTTCTGTCTCTGAATTTCT  900

seq1  TCATAGACAATTTATTGTTTTTCATGAGGGATATTTTCCTTGAACAATAG  950
      ||||||||||||||||||||||||||| |||||||||||||||   ||||
seq2  TCATAGACAATTTATTGTTTTTCATGA-GGATATTTTCCTTGA--CATAG  947

seq1  TTACTGTTTGAATGTGACCTATGATTTCCTGCAGGACTTCTCAACTATGA  1000
       |||||||||||||||||||||||||| ||||| |||||||| |||||||
seq2  -TACTGTTTGAATGTGACCTATGATTT-CTGCA-GACTTCTC-ACTATGA  993

seq1  AGCAAATTGATGGATGAACAGGAATATAGGTGTGGAATAGAATGTACACA  1050
      |||||| |||| |||| ||||  ||||| |||||  |||| |||||||||
seq2  AGCAAA-TGAT-GATG-ACAG--ATATA-GTGTG--ATAG-ATGTACACA  1034

seq1  TGATGTACCCTGTTCCTTGATTGAAGAGGAAGACATGCTCTGGGAGACTG  1100
      ||||||||| |||    |||||| ||| |||||||||||||||  |||||
seq2  TGATGTACCTTGT---CTGATTG-AGA-GAAGACATGCTCTGG--GACTG  1077

seq1  CAAGAATTTCTTCATAACTACAA  1123
      |||||| ||||   |||||||||
seq2  CAAGAA-TTCT--CTAACTACAA  1097

seq1: chr13_62588722_62589440
seq2: B6Ng01-142A04.g_449_1168

seq1  CACATTCATT---------GGGTTTCTATGCAATATGTATTCTTTTATGT  41
      ||||||||||         |||||||| | |  |||||||||||||||| 
seq2  CACATTCATTACATTTGTAGGGTTTCTCTCCTGTATGTATTCTTTTATGC  50

seq1  CTTTGGAGGTTATAGTGTTGTAAAAAGGCTTTCTCACATTTATTATATTT  91
       |||||||  |||  ||||| ||||||||||| ||||||| || | ||||
seq2  TTTTGGAGACTATGATGTTGGAAAAAGGCTTTGTCACATTGATGACATTT  100

seq1  GTAGGGTTTCTCTCCAGTAGGAATTCTTCTATGTGACTGGAGGTGAATAT  141
      ||||||||||||||| ||| | |||||| ||||    ||||| | |   |
seq2  GTAGGGTTTCTCTCCTGTATGTATTCTTTTATGCTTTTGGAGATTACAGT  150

seq1  GTTGTGAAAAGGCTTTCTCACAGTTATTACATCTGTAGGGTTTCTCTCCA  191
      ||| ||||||||||||  |||| | || |||| |||||||||||||||||
seq2  GTTCTGAAAAGGCTTTACCACATTGATCACATTTGTAGGGTTTCTCTCCA  200

seq1  GTATGAATTCTTCCATGCCTTTTAAGCCGACTATGTTGTGAAAAGGCTTT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATTCTTCCATGCCTTTTAAGCCGACTATGTTGTGAAAAGGCTTT  250

seq1  ACCACACAGATCACATTCATAGCATTTCTCTCCAGTATGTGTTCCTTTAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGATCACATTCATAGCATTTCTCTCCAGTATGTGTTCCTTTAG  300

seq1  GTTGTAGGAGATTACTGTGACTTGAAAAGGCTTTTTCACACTGATGGCAT  341
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GTTGTAGGAGATTACTGTGACTTGAAAAGGCTTTTTCCCACTGATGACAT  350

seq1  TCATAAGGTTTCTCTCCCATATGAATTCCTTCATAGCTTTTAAGATGACT  391
      |||||| ||||||||| | |||||||||||||||||||||||||||||||
seq2  TCATAAAGTTTCTCTCGCGTATGAATTCCTTCATAGCTTTTAAGATGACT  400

seq1  GTGATCTTCAAAGGCTTTACCACATTGCTTCCATTCATAGAGTTTCTTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTCAAAGGCTTTACCACATTGCTTCCATTCATAGAGTTTCTTTC  450

seq1  CAGTTTGTACTCTTTTACGAAGCTGGAGACGATGTTGAGCAAAGGCTTCA  491
      |||||||| ||||||||||||  |||||||||||||||||||||||||||
seq2  CAGTTTGTGCTCTTTTACGAATTTGGAGACGATGTTGAGCAAAGGCTTCA  500

seq1  ACAAATT-GAATAATTCCAAGGGGGTTCATTTCTGTATGAATTCTTTCAT  540
      || |||| |||||||||| ||| || ||||||||||||| ||||||||||
seq2  ACTAATTGGAATAATTCC-AGGAGGGTCATTTCTGTATG-ATTCTTTCAT  548

seq1  GCCTTTGAGCATGACGGTGAGCATAAAAAAAGACTTTATCACATTGAGTA  590
      ||||| ||||||||  ||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGCATGATTGTGAGCATAAAAAAAGACTTTATCACATTGAGTA  598

seq1  TATTCAGACGCTTTCTCTGCACTCTGACTTCTTTCATGCCTGAGGAAAAA  640
      |||||||||||||||||||||||||||||   |||||| |||| ||||||
seq2  TATTCAGACGCTTTCTCTGCACTCTGACT--CTTCATG-CTGA-GAAAAA  644

seq1  ATCGGCACAT-GTGAAAGCTTTATCACACTAACGAATACTTTCATCTGTA  689
      || ||||||| ||||||||||||||||||| | ||||||||| || ||||
seq2  ATTGGCACATGGTGAAAGCTTTATCACACTGATGAATACTTTTAT-TGTA  693

seq1  TGATTAAATGGTACTATTTGTCTAAATATA  719
      |||||  |||||||| ||||||||| ||||
seq2  TGATT--ATGGTACT-TTTGTCTAATTATA  720