BAC Information

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BAC

Clone NameB6Ng01-142N24
Chromosome13 (Build37)
Map Location 24,850,536 - 25,030,930
singlet/doubletdoublet
Overlap geneGmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1
Upstream geneHist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145
Downstream geneGpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142N24.bB6Ng01-142N24.g
ACCDH940962DH940963
length1,0121,136
definitionDH940962|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N24, 5' end.DH940963|Mus musculus domesticus DNA, BAC clone: B6Ng01-142N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,850,536 - 24,851,560)(25,029,772 - 25,030,930)
sequence
gaattcctgttctgccctctctcaagggtcagacagtgactcaagagcta
gaacctgaaataaactctcatcctgtttgtttctgctcatggtgggtttg
ttgttgttttggtttttctgagaccgggtttctctgtgtagctgtggcta
tcctagaacttactatgtagatcaggctggccttaaactcacagagatcc
acctgcttataccttcttgctgggactaacgggtgtgtcaccgtgcctga
cacaaggaatgtaacttttagcaatacattgtaggtggaattgtaagtgg
gaacaaatgcatgtgtggataatggtagcccctcagctatcccctgacag
tagaagcagttttgctacaagtccattcattaggacattgatagaatgtc
agtgctttaggcaaattaaatactctggtccaggctggtagcacaaacct
gtaatcccagcactgggtaggttgggaggcaggcaggagaagctctcttg
agttcaaggccagccagatgtctacatcacagtgagtggcacagtaacca
gggccacttactgagaacctatatcaaaaaataaacaccaataacaaaaa
caagccagacttggtggcataaacctttaatcctgccacttggaaggcag
agataggagaatttctatgaatttcaggatagccacggctactagtaaga
ccttgcctcaaaacaagcccttccaaaaacaaacaacaaaagccttctaa
aatgcccaagctattattttaaaaacaaaaagttgccttctttatgatat
gcaaatagcccctgtagtgttcccgatttgaaagttttatttgggaaaga
aaatcattagttatactgccaccatgggacagcaacaatggtaaacactc
aagcaagttagcaagacatgacacacactgcgtgagaaagttactgtgct
tcacacgctgcgtcactttccacgtagctctagtgtgcttatctcgctgt
gcacggagggac
gaattctatattggatcccgagacacaaagccgatttcaagtttggggtc
tacagtgattaagacaagatctgaaggaatgtccagagaagatagaatgg
tctatgagtagagcgccccctacaggcagcaggaatacaggccggccagc
ttgcgatagctgagaaagccaccggaggccctccttatcttgaccgcttc
tcgctccagttcccttaataaaatacaggacaaagtagtgaacacacaca
gcacatatgtgtgcacacctacctgtacacacaattaaatcctgctattg
agacttctgccagatgtatctggcacatgactgggaggctctgactcagc
agaagacaaagccaacaattaaaagaacatccaaggcattttgcaaatac
aatattctaactggggcatgtagtgctcgcctgtaattccagaactctag
gaaggaagactgcgagatgtaggtcatcctaggctacataataacatgtt
ttctcaataataacaacaacatttgactccacgtattctgaacacaaacc
tgctgtttcttttattcaaattaaaacttagggtttctttcttctgcaga
gtttggggcccagatgcagcaggaggatgaagattttgtttaaggtgata
gtgctatgttcaatcctcacacccctgttgatttcttttttaaaataggg
tctcagccttgaacttaccgagagcctcccaagtgctggccacaacaccg
ggcttattattacttctaggatgattgtttccagttactaaacttcagct
ctgttagttgcttgatgtacagcagctacgtcacgaagcaaagggcagtg
gcttgggagcacactgctcagaccaacagaggacacacacagaaagcatg
cagagagcctcacttcgaccctatgacggttgcccaaatctcagtactca
ggagcgctgtgctcgatcatgaggggatttgtagaaaagcatgcagacga
tcactgagccccacttcaccccctcactgacagtgatccaagttcatgct
cagtagccggagcaattggaacgcagttgcccttggttcttcttgaaccg
gaggtgccatattgccgggcctggggaactggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24850536_24851560
seq2: B6Ng01-142N24.b_48_1059

seq1  GAATTCCTGTTCTGCCCTCTCTCAAGGGTCAGACAGTGACTCAAGAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCTGCCCTCTCTCAAGGGTCAGACAGTGACTCAAGAGCTA  50

seq1  GAACCTGAAATAAACTCTCATCCTGTTTGTTTCTGCTCATGGTGGGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAAATAAACTCTCATCCTGTTTGTTTCTGCTCATGGTGGGTTTG  100

seq1  TTGTTGTTTTGGTTTTTCTGAGACCGGGTTTCTCTGTGTAGCTGTGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTGGTTTTTCTGAGACCGGGTTTCTCTGTGTAGCTGTGGCTA  150

seq1  TCCTAGAACTTACTATGTAGATCAGGCTGGCCTTAAACTCACAGAGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAACTTACTATGTAGATCAGGCTGGCCTTAAACTCACAGAGATCC  200

seq1  ACCTGCTTATACCTTCTTGCTGGGACTAACGGGTGTGTCACCGTGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTATACCTTCTTGCTGGGACTAACGGGTGTGTCACCGTGCCTGA  250

seq1  CACAAGGAATGTAACTTTTAGCAATACATTGTAGGTGGAATTGTAAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAATGTAACTTTTAGCAATACATTGTAGGTGGAATTGTAAGTGG  300

seq1  GAACAAATGCATGTGTGGATAATGGTAGCCCCTCAGCTATCCCCTGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATGCATGTGTGGATAATGGTAGCCCCTCAGCTATCCCCTGACAG  350

seq1  TAGAAGCAGTTTTGCTACAAGTCCATTCATTAGGACATTGATAGAATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAGTTTTGCTACAAGTCCATTCATTAGGACATTGATAGAATGTC  400

seq1  AGTGCTTTAGGCAAATTAAATACTCTGGTCCAGGCTGGTAGCACAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTAGGCAAATTAAATACTCTGGTCCAGGCTGGTAGCACAAACCT  450

seq1  GTAATCCCAGCACTGGGTAGGTTGGGAGGCAGGCAGGAGAAGCTCTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCAGCACTGGGTAGGTTGGGAGGCAGGCAGGAGAAGCTCTCTTG  500

seq1  AGTTCAAGGCCAGCCAGATGTCTACATCACAGTGAGTGGCACAGTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCAGATGTCTACATCACAGTGAGTGGCACAGTAACCA  550

seq1  GGGCCACTTACTGAGAACCTATATCAAAAAATAAACACCAATAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTTACTGAGAACCTATATCAAAAAATAAACACCAATAACAAAAA  600

seq1  CAAGCCAGACTTGGTGGCATAAACCTTTAATCCTGCCACTTGGAAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGACTTGGTGGCATAAACCTTTAATCCTGCCACTTGGAAGGCAG  650

seq1  AGATAGGAGAATTTCTATGAATTTCAGGATAGCCACGGCTACTAGTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAGAATTTCTATGAATTTCAGGATAGCCACGGCTACTAGTAAGA  700

seq1  CCTTGCCTCAAAACAAGCCCTTCCAAAAACAAACAACAAAAGCCTTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCAAAACAAGCCCTTCCAAAAACAAACAACAAAAGCCTTCTAA  750

seq1  AATGCCCAAGCTATTATTTTAAAAACAAAAAGTTGCCTTCTTTATGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAAGCTATTATTTTAAAAACAAAAAGTTGCCTTCTTTATGATAT  800

seq1  GCAAATAGCCCCTGTAGTGTTCCCGATTTGAAAGTTTTATTTGGGAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAGCCCCTGTAGTGTTCCCGATTTGAAAGTTTTATTTGGGAAAGA  850

seq1  AAATCATTAGTTATACTGCCACCATGGGACAGCAAACAATGGTAAACACT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATCATTAGTTATACTGCCACCATGGGACAGC-AACAATGGTAAACACT  899

seq1  CAAGCAAGGTTAGCAAGAACATGACACCACACCTGCGTGAGAAAGTTACT  950
      ||||||| ||||||||| |||||||| |||| ||||||||||||||||||
seq2  CAAGCAA-GTTAGCAAG-ACATGACA-CACA-CTGCGTGAGAAAGTTACT  945

seq1  GTGCTTCACACGGCTGCGTCCACCTTTCCCACGGTAGCCTCTAGTGTTGC  1000
      ||||||||||| ||||||| |||  || |||| |||| |||||||| |||
seq2  GTGCTTCACAC-GCTGCGT-CAC--TTTCCAC-GTAG-CTCTAGTG-TGC  988

seq1  TTATCTCGCTGTGCAACGGAGGGAC  1025
      |||||||||||||| ||||||||||
seq2  TTATCTCGCTGTGC-ACGGAGGGAC  1012

seq1: chr13_25029772_25030930
seq2: B6Ng01-142N24.g_68_1203 (reverse)

seq1  TTCCCCAGTTCCCCAGCCCCGGCAATAT-GCA-CTCCGTCTAAAGAAGGC  48
      |||||||||||||||| ||||||||||| ||| |||||  | ||||| | 
seq2  TTCCCCAGTTCCCCAGGCCCGGCAATATGGCACCTCCGGTTCAAGAA-GA  49

seq1  ACCAAAGGCCAAACTCGCGGTTTCATATGCTCGGGCTACTGAGCATTGGA  98
      ||||| |||  |||| || ||| ||  ||||| |||||||||||||  ||
seq2  ACCAAGGGC--AACT-GC-GTTCCAATTGCTCCGGCTACTGAGCAT--GA  93

seq1  ACTGGGGATCACTGTTCAGTGA-GGGGTGAAGTGTGGCTCAGTGATCGGT  147
      |||  ||||||||| ||||||| ||||||||||| |||||||||||||  
seq2  ACT-TGGATCACTG-TCAGTGAGGGGGTGAAGTGGGGCTCAGTGATCG--  139

seq1  TCCTTGCATGCTTTTCTACATATCCCCTTCATGAATTCGGAGCACAGCGC  197
      ||  |||||||||||||||| |||||| ||||||  || |||||||||||
seq2  TC--TGCATGCTTTTCTACAAATCCCC-TCATGA--TC-GAGCACAGCGC  183

seq1  TCCTGAGTACTGAGATTTGGGGCAACCGTTCAATTAGGGTCGAAGTGAGG  247
      |||||||||||||||||| ||||||||| |||  ||||||||||||||||
seq2  TCCTGAGTACTGAGATTT-GGGCAACCG-TCA--TAGGGTCGAAGTGAGG  229

seq1  CTTCCTCTTGCATGCTTTCTGTGTGTGTCCTCTGTTGGTCCTGAGCAGTG  297
      ||  ||| ||||||||||||||||||||||||||||||| ||||||||| 
seq2  CT--CTC-TGCATGCTTTCTGTGTGTGTCCTCTGTTGGT-CTGAGCAGT-  274

seq1  GTGCTCCCAAGCCACTGCCCTTTGCTTCGTGACGTAGCTGCTGTACATCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCCAAGCCACTGCCCTTTGCTTCGTGACGTAGCTGCTGTACATCA  324

seq1  AGCAACTAACAGAGCTGAAGTTTAGTAACTGGAAACAATCATCCTAGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAACAGAGCTGAAGTTTAGTAACTGGAAACAATCATCCTAGAAG  374

seq1  TAATAATAAGCCCGGTGTTGTGGCCAGCACTTGGGAGGCTCTCGGTAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAGCCCGGTGTTGTGGCCAGCACTTGGGAGGCTCTCGGTAAGT  424

seq1  TCAAGGCTGAGACCCTATTTTAAAAAAGAAATCAACAGGGGTGTGAGGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTGAGACCCTATTTTAAAAAAGAAATCAACAGGGGTGTGAGGAT  474

seq1  TGAACATAGCACTATCACCTTAAACAAAATCTTCATCCTCCTGCTGCATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAGCACTATCACCTTAAACAAAATCTTCATCCTCCTGCTGCATC  524

seq1  TGGGCCCCAAACTCTGCAGAAGAAAGAAACCCTAAGTTTTAATTTGAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCAAACTCTGCAGAAGAAAGAAACCCTAAGTTTTAATTTGAATA  574

seq1  AAAGAAACAGCAGGTTTGTGTTCAGAATACGTGGAGTCAAATGTTGTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACAGCAGGTTTGTGTTCAGAATACGTGGAGTCAAATGTTGTTGT  624

seq1  TATTATTGAGAAAACATGTTATTATGTAGCCTAGGATGACCTACATCTCG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGAGAAAACATGTTATTATGTAGCCTAGGATGACCTACATCTCG  674

seq1  CAGTCTTCCTTCCTAGAGTTCTGGAATTACAGGCGAGCACTACATGCCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCTTCCTAGAGTTCTGGAATTACAGGCGAGCACTACATGCCCC  724

seq1  AGTTAGAATATTGTATTTGCAAAATGCCTTGGATGTTCTTTTAATTGTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAATATTGTATTTGCAAAATGCCTTGGATGTTCTTTTAATTGTTG  774

seq1  GCTTTGTCTTCTGCTGAGTCAGAGCCTCCCAGTCATGTGCCAGATACATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCTTCTGCTGAGTCAGAGCCTCCCAGTCATGTGCCAGATACATC  824

seq1  TGGCAGAAGTCTCAATAGCAGGATTTAATTGTGTGTACAGGTAGGTGTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAAGTCTCAATAGCAGGATTTAATTGTGTGTACAGGTAGGTGTGC  874

seq1  ACACATATGTGCTGTGTGTGTTCACTACTTTGTCCTGTATTTTATTAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGTGCTGTGTGTGTTCACTACTTTGTCCTGTATTTTATTAAGG  924

seq1  GAACTGGAGCGAGAAGCGGTCAAGATAAGGAGGGCCTCCGGTGGCTTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGCGAGAAGCGGTCAAGATAAGGAGGGCCTCCGGTGGCTTTCT  974

seq1  CAGCTATCGCAAGCTGGCCGGCCTGTATTCCTGCTGCCTGTAGGGGGCGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATCGCAAGCTGGCCGGCCTGTATTCCTGCTGCCTGTAGGGGGCGC  1024

seq1  TCTACTCATAGACCATTCTATCTTCTCTGGACATTCCTTCAGATCTTGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATAGACCATTCTATCTTCTCTGGACATTCCTTCAGATCTTGTC  1074

seq1  TTAATCACTGTAGACCCCAAACTTGAAATCGGCTTTGTGTCTCGGGATCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACTGTAGACCCCAAACTTGAAATCGGCTTTGTGTCTCGGGATCC  1124

seq1  AATATAGAATTC  1159
      ||||||||||||
seq2  AATATAGAATTC  1136