BAC Information

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BAC

Clone NameB6Ng01-143G23
Chromosome13 (Build37)
Map Location 21,547,325 - 21,670,895
singlet/doubletdoublet
Overlap gene4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187
Downstream geneOlfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G23.bB6Ng01-143G23.g
ACCDH941370DH941371
length912966
definitionDH941370|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G23, 5' end.DH941371|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,669,986 - 21,670,895)(21,547,325 - 21,548,296)
sequence
gaattctttaaaaattgttcagcctcctgaacctagcagtttcccttcac
ttaatgatgagccaatgtgcttgtgtactgttcgttgatgaaaatactga
gaatatggcagttaagtaattcaggatcattcgagtagtgaaaagcaatg
tggttgaaacctgtccagatttgaaaactgttcacttgcgttttgtaaga
cttgttatattatactgctctggtatatacatcttataggcatatatgct
tgtctgagttactatactaatcttaaaatacatgttttatcaaagtaata
aagtaagaaaataacaagaacagtaactctattaacaaaaggaaattttt
agggacaacctcctaacactaaaatgtacacgctgagaatgaagtttttg
tctttgtgtcttgtttatgctaatagctttaaatatgtatcttgattcct
tagatctaccaaccttagtatctgattatggaccataattagtaatggga
gaaatgttattgctgtcactatctctttgactgtgtagcttatatgatat
gcttaaacttctgtacttcattcaacacatctacactgcttcctgcccct
cttacttctctttcacctcccctcttatcacacacttgagtaattaaact
cctgccttgtcaaagtgatctcagttcttcaacatttccaaccccatcac
caataaagcttcagattagttaattatctttagaaaaaaattctgagcaa
acaactagtcacctggatctaaagaaaacaggagctgggcagtggtggtg
cacacctttaatcccagcacttgcagaggcagggagattctgagtttgag
acagcctgttctacagagttgagttctaggatagccagggctacaccgag
aaaccctgtctg
gaattccagggaatgtgattcgtcagactgtactggctgagaagagcaga
gtatacaactagcaaaatatcaagatttgcctgcaggtcttatataaatg
cacgtatgagactggggcttctatattagtagtattattggcaatacatg
agtatattaccgataagtcctatttcagaaaataactcatagaattattc
agatacaactcatagaattgtttcaagaatttgcatggtctttattagat
ttttgttgtactgtcagaactatgtgcggtcctagatttgggaccctatt
ctaaggccgttgaggatacagctccaatatctttctagttgttgctgccc
acgcagatttgagtttcagttgcttttgagtctggtggctagagaaaggg
tcctggtaccctgtttcctcctctggctttaccttctcaagcctggtgaa
gaagataggcagggtctgaatgcctgcccagttaggtaaaatgtaacaga
aatggagcttaggaatcagctttcctttgtaggatcatcccagtaagatg
gccctgtgtctttctaactcaggatatcaaaggtagaaagaggagtgtag
gccaagtaataccccagtggctgttcatcttgtcctacacctagagggag
atttttaaatttttactttatttaatgtgtgttttctacaagtgtttctt
tatgtgtgtgtgcacatgtgagccacagcatgcatatggaggtcagagga
caacttccagagtcttttacctctttccactatttgaagatttgacttgg
aatcagtgtggagatgttgcaccttgatactaaggttgtagtctaccatg
ttcaaacagctttcctgagcttggtggagaatggaaggctccttttctgg
ggtggtgatggtggagggcggctctcttctcagtctaactggggagcccg
accgagatcttctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21669986_21670895
seq2: B6Ng01-143G23.b_44_954 (reverse)

seq1  AGACAGGGTTTCTCTGTGTAGCCCTGCCTATCCTGGAACTC-ACTCTGTA  49
      |||||||||||||| ||||||||||| ||||||| |||||| ||||||||
seq2  AGACAGGGTTTCTCGGTGTAGCCCTGGCTATCCTAGAACTCAACTCTGTA  50

seq1  GACCAGGCTGGTCTCAAACTCAGAAATCTGCCTGCCTCTGCAAGTGCTGG  99
      || |||||| ||||||||||||| ||||| ||||||||||||||||||||
seq2  GAACAGGCT-GTCTCAAACTCAG-AATCTCCCTGCCTCTGCAAGTGCTGG  98

seq1  AATTAAAGGTGTGCACCACCACTGCCCAGCTCCTGTTTTCTTTAGATCCA  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGCACCACCACTGCCCAGCTCCTGTTTTCTTTAGATCCA  148

seq1  GGTGACTAG-TGTTTGCTCAGAATTTTTTTCTAAAGATAATTTACTAATC  198
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  GGTGACTAGTTGTTTGCTCAGAATTTTTTTCTAAAGATAATTAACTAATC  198

seq1  TGAAGCTTTATTGGTGATGGGGTTGGAAATGTTGAAGAACTGAGATCACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTTATTGGTGATGGGGTTGGAAATGTTGAAGAACTGAGATCACT  248

seq1  TTGACAAGGCAGGAG-TTAATTACTCAAGTGTGTGATAAGAGGGGAGGTG  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGCAGGAGTTTAATTACTCAAGTGTGTGATAAGAGGGGAGGTG  298

seq1  AAAGAGAAGTAAGAGGGGCAGGAAGCAGTGTAGATGTGTTGAATGAAGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGTAAGAGGGGCAGGAAGCAGTGTAGATGTGTTGAATGAAGTA  348

seq1  CAGAAGTTTAAGCATATCATATAAGCTACACAGTCAAAGAGATAGTGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTAAGCATATCATATAAGCTACACAGTCAAAGAGATAGTGACA  398

seq1  GCAATAACATTTCTCCCATTACTAATTATGGTCCATAATCAGATACTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACATTTCTCCCATTACTAATTATGGTCCATAATCAGATACTAAG  448

seq1  GTTGGTAGATCTAAGGAATCAAGATACATATTTAAAGCTATTAGCATAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGATCTAAGGAATCAAGATACATATTTAAAGCTATTAGCATAAA  498

seq1  CAAGACACAAAGACAAAAACTTCATTCTCAGCGTGTACATTTTAGTGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACAAAGACAAAAACTTCATTCTCAGCGTGTACATTTTAGTGTTA  548

seq1  GGAGGTTGTCCCTAAAAATTTCCTTTTGTTAATAGAGTTACTGTTCTTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGTCCCTAAAAATTTCCTTTTGTTAATAGAGTTACTGTTCTTGT  598

seq1  TATTTTCTTACTTTATTACTTTGATAAAACATGTATTTTAAGATTAGTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTACTTTATTACTTTGATAAAACATGTATTTTAAGATTAGTAT  648

seq1  AGTAACTCAGACAAGCATATATGCCTATAAGATGTATATACCAGAGCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCAGACAAGCATATATGCCTATAAGATGTATATACCAGAGCAGT  698

seq1  ATAATATAACAAGTCTTACAAAACGCAAGTGAACAGTTTTCAAATCTGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAACAAGTCTTACAAAACGCAAGTGAACAGTTTTCAAATCTGGA  748

seq1  CAGGTTTCAACCACATTGCTTTTCACTACTCGAATGATCCTGAATTACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCAACCACATTGCTTTTCACTACTCGAATGATCCTGAATTACTT  798

seq1  AACTGCCATATTCTCAGTATTTTCATCAACGAACAGTACACAAGCACATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCATATTCTCAGTATTTTCATCAACGAACAGTACACAAGCACATT  848

seq1  GGCTCATCATTAAGTGAAGGGAAACTGCTAGGTTCAGGAGGCTGAACAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATCATTAAGTGAAGGGAAACTGCTAGGTTCAGGAGGCTGAACAAT  898

seq1  TTTTAAAGAATTC  910
      |||||||||||||
seq2  TTTTAAAGAATTC  911

seq1: chr13_21547325_21548296
seq2: B6Ng01-143G23.g_69_1034

seq1  GAATTCCAGGGAATGTGATTCGTCAGACTGTACTGGCTGAGAAGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAATGTGATTCGTCAGACTGTACTGGCTGAGAAGAGCAGA  50

seq1  GTATACAACTAGCAAAATATCAAGATTTGCCTGCAGGTCTTATATAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAACTAGCAAAATATCAAGATTTGCCTGCAGGTCTTATATAAATG  100

seq1  CACGTATGAGACTGGGGCTTCTATATTAGTAGTATTATTGGCAATACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATGAGACTGGGGCTTCTATATTAGTAGTATTATTGGCAATACATG  150

seq1  AGTATATTACCGATAAGTCCTATTTCAGAAAATAACTCATAGAATTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTACCGATAAGTCCTATTTCAGAAAATAACTCATAGAATTATTC  200

seq1  AGATACAACTCATAGAATTGTTTCAAGAATTTGCATGGTCTTTATTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAACTCATAGAATTGTTTCAAGAATTTGCATGGTCTTTATTAGAT  250

seq1  TTTTGTTGTACTGTCAGAACTATGTGCGGTCCTAGATTTGGGACCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTACTGTCAGAACTATGTGCGGTCCTAGATTTGGGACCCTATT  300

seq1  CTAAGGCCGTTGAGGATACAGCTCCAATATCTTTCTAGTTGTTGCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCGTTGAGGATACAGCTCCAATATCTTTCTAGTTGTTGCTGCCC  350

seq1  ACGCAGATTTGAGTTTCAGTTGCTTTTGAGTCTGGTGGCTAGAGAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGATTTGAGTTTCAGTTGCTTTTGAGTCTGGTGGCTAGAGAAAGGG  400

seq1  TCCTGGTACCCTGTTTCCTCCTCTGGCTTTACCTTCTCAAGCCTGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTACCCTGTTTCCTCCTCTGGCTTTACCTTCTCAAGCCTGGTGAA  450

seq1  GAAGATAGGCAGGGTCTGAATGCCTGCCCAGTTAGGTAAAATGTAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGGCAGGGTCTGAATGCCTGCCCAGTTAGGTAAAATGTAACAGA  500

seq1  AATGGAGCTTAGGAATCAGCTTTCCTTTGTAGGATCATCCCAGTAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCTTAGGAATCAGCTTTCCTTTGTAGGATCATCCCAGTAAGATG  550

seq1  GCCCTGTGTCTTTCTAACTCAGGATATCAAAGGTAGAAAGAGGAGTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGTCTTTCTAACTCAGGATATCAAAGGTAGAAAGAGGAGTGTAG  600

seq1  GCCAAGTAATACCCCAGTGGCTGTTCATCTTGTCCTACACCTAGAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAATACCCCAGTGGCTGTTCATCTTGTCCTACACCTAGAGGGAG  650

seq1  ATTTTTAAATTTTTACTTTATTTAATGTGTGTTTTCTACAAGTGTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTTTTACTTTATTTAATGTGTGTTTTCTACAAGTGTTTCTT  700

seq1  TATGTGTGTGTGCACATGTGAGCCACAGCATGCATATGGAGGTCAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGCACATGTGAGCCACAGCATGCATATGGAGGTCAGAGGA  750

seq1  CAACTTCCAGAGTCTTTTACCTCTTTCCACTATTTGAAGATTTGACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCAGAGTCTTTTACCTCTTTCCACTATTTGAAGATTTGACTTGG  800

seq1  AATCAGTGTGGAGATGTTGCACCTTGATACTAAGGTTGTAGTCTACCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGTGGAGATGTTGCACCTTGATACTAAGGTTGTAGTCTACCATG  850

seq1  TTCAAACAGCTTTCCTGAGCTTGGTGAGAAATGGAGGGCTCCTTTTCTTG  900
      ||||||||||||||||||||||||||   |||||| ||||||||||| ||
seq2  TTCAAACAGCTTTCCTGAGCTTGGTGGAGAATGGAAGGCTCCTTTTC-TG  899

seq1  GGGTGGTGATGGTGGAAGGGCTGGCTTCTCTTCTCTGTCTGATCTGGGGA  950
      ||||||||||||||| ||||| ||| ||||||||| |||| | |||||||
seq2  GGGTGGTGATGGTGG-AGGGC-GGC-TCTCTTCTCAGTCT-AACTGGGGA  945

seq1  GCCCGACCAGCAATCTTCTACC  972
      |||||||| |  ||||||||||
seq2  GCCCGACC-GAGATCTTCTACC  966