BAC Information

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BAC

Clone NameB6Ng01-144A07
Chromosome13 (Build37)
Map Location 118,176,472 - 118,235,057
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365
Downstream geneLOC382807, Hcn1, LOC100041695, LOC674926, Mrps30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144A07.bB6Ng01-144A07.g
ACCDH941804DH941805
length1,115980
definitionDH941804|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A07, 5' end.DH941805|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,176,472 - 118,177,614)(118,234,446 - 118,235,057)
sequence
gaattcctcagtgcctaccttcattttctgagatccaaatatatgtttgt
gtgagtctgtgagcacttgtgcaaatgtgcatgtttacagcaggtcactt
ggaattggacaacttaagttatcagggggtttgtcccaagagaagtccaa
acctctctctttcagcagcctgtaggtctttatctagggggaaaaggcct
tgtgggactttttccatctcattagtatgtcaaccaatcttgccattgtc
caggttcagtctactatattgagattttttttttcatgcagcttccctgt
cacagaagacactgtctcccagcaggcatcttggtcctctggcacacaga
atctgttgtttcttccataatgcatcctaagccttacataagggtttgtt
ttgtagatgtgtcagttaaggctggtcattccatgtgatatgtaatcagg
atgcagttagatattatgttggttttggaaattggcagtagtagattatt
ctctatggtctgtatgacctcaccagacactggtaattgacctggttccc
agtacgaggcatgagttcactcctattgattgggctttaaatccagttag
acagctgttggttgctcccaagatgcacgtgccactgatgcaccctttgg
gatgccttgccaggctcatcattgttgtggttcatagactttacagctgg
gtagggctatggcttccttcttctcccttagcattttgcttagcaccctg
agacactgtcaaagagggaggagggatacataaccctaaagatgcttgga
aaagtcatatggaaacactgttttatgcttacttaaaactgtaatatgtg
ttatataactatatctacacactctgaaataatttttgacacttggggtg
acaatgttgcactcagagtcatatattacctaacaaactctagtgctgag
catgagaaacacgattacagtcattggtcaggggagttgagagactcact
ataaatttttatttttattctgctgttgccctcgatgcttcagacttgga
gtgagcctatgctgaagaagaaaccaatatttgatgagactggaggatca
cctagactggggtgg
gaattcaaagttttaatatgtagagcgggtataatgactatgttttcctt
actgtaagttcatagtgtctaacggtaattctgaagtaaataatctagca
ttgtctatttagacaatattttattttatataatattacataatactttg
tattatattttgtataatattgaataaaataactgtataattgaatttca
aatgttacaaatatggctgaaagccagaagaaagaattgctgtccccaga
ttattcttcaatcatctttaggctcgtcatttccacatgctcaagtgaat
gaacatgggggattctctttgagtatctttgaagaaaaagtgtcattcgt
atgattacatctcaacacttgactagacatgctttactgattttaaacac
tctgtgtatggaaagaagtttgcacaaagccccccactcatggtataatg
tttatctaaatgaacagccactgtgagcagtttaaccaatgtgctaagag
caccatttccctggaaccctgttgtcatttagaatgtgacagattatcga
agcctaaacctaggcaggaagctatagtttatccaaaaccgagtaatgtg
agatcctcaaagaaaacaactagccttttaaaacttcctacaattaccga
agagaaaatttgatatttgaagcaaaaagttagaatttgaggaaatattt
agctgtcagctatgaaaccctcatattctcaatagatttctactgagagc
agtggttgtaggaaggcattccggactccctggccagcccggatggaaat
ctgtgccaggcagtaaacaagcccatatttggtggatggctcgcccttaa
tccctgattggctgagcaagcctgcctggtgagtgatgtgacctgtgtga
ttggttgagtgtgttgtggcttgagtgcataaaacgcttgtacccaggtc
aggggagttgagagagagctgctgagtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118176472_118177614
seq2: B6Ng01-144A07.b_47_1161

seq1  GAATTCCTCAGTGCCTACCTTCATTTTCTGAGATCCAAATATATGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGTGCCTACCTTCATTTTCTGAGATCCAAATATATGTTTGT  50

seq1  GTGAGTCTGTGAGCACTTGTGCAAATGTGCATGTTTACAGCAGGTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTGTGAGCACTTGTGCAAATGTGCATGTTTACAGCAGGTCACTT  100

seq1  GGAATTGGACAACTTAAGTTATCAGGGGGTTTGTCCCAAGAGAAGTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGACAACTTAAGTTATCAGGGGGTTTGTCCCAAGAGAAGTCCAA  150

seq1  ACCTCTCTCTTTCAGCAGCCTGTAGGTCTTTATCTAGGGGGAAAAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTCTTTCAGCAGCCTGTAGGTCTTTATCTAGGGGGAAAAGGCCT  200

seq1  TGTGGGACTTTTTCCATCTCATTAGTATGTCAACCAATCTTGCCATTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGACTTTTTCCATCTCATTAGTATGTCAACCAATCTTGCCATTGTC  250

seq1  CAGGTTCAGTCTACTATATTGAGATTTTTTTTTTCATGCAGCTTCCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGTCTACTATATTGAGATTTTTTTTTTCATGCAGCTTCCCTGT  300

seq1  CACAGAAGACACTGTCTCCCAGCAGGCATCTTGGTCCTCTGGCACACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGACACTGTCTCCCAGCAGGCATCTTGGTCCTCTGGCACACAGA  350

seq1  ATCTGTTGTTTCTTCCATAATGCATCCTAAGCCTTACATAAGGGTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGTTTCTTCCATAATGCATCCTAAGCCTTACATAAGGGTTTGTT  400

seq1  TTGTAGATGTGTCAGTTAAGGCTGGTCATTCCATGTGATATGTAATCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATGTGTCAGTTAAGGCTGGTCATTCCATGTGATATGTAATCAGG  450

seq1  ATGCAGTTAGATATTATGTTGGTTTTGGAAATTGGCAGTAGTAGATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTAGATATTATGTTGGTTTTGGAAATTGGCAGTAGTAGATTATT  500

seq1  CTCTATGGTCTGTATGACCTCACCAGACACTGGTAATTGACCTGGTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGTCTGTATGACCTCACCAGACACTGGTAATTGACCTGGTTCCC  550

seq1  AGTACGAGGCATGAGTTCACTCCTATTGATTGGGCTTTAAATCCAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGAGGCATGAGTTCACTCCTATTGATTGGGCTTTAAATCCAGTTAG  600

seq1  ACAGCTGTTGGTTGCTCCCAAGATGCACGTGCCACTGATGCACCCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTTGGTTGCTCCCAAGATGCACGTGCCACTGATGCACCCTTTGG  650

seq1  GATGCCTTGCCAGGCTCATCATTGTTGTGGTTCATAGACTTTACAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTGCCAGGCTCATCATTGTTGTGGTTCATAGACTTTACAGCTGG  700

seq1  GTAGGGCTATGGCTTCCTTCTTCTCCCTTAGCATTTTGCTTAGCACCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTATGGCTTCCTTCTTCTCCCTTAGCATTTTGCTTAGCACCCTG  750

seq1  AGACACTGTCAAAGAGGGAGGAGGGATACATAACCCTAAAGATGCTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGTCAAAGAGGGAGGAGGGATACATAACCCTAAAGATGCTTGGA  800

seq1  AAAGTCATATGGAAACACTGTTTTATGCTTACTTAAAACTGTAATATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATATGGAAACACTGTTTTATGCTTACTTAAAACTGTAATATGTG  850

seq1  TTATATAACTATATCTACACACTCTGAAATAATTTTTGACACTTGGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAACTATATCTACACACTCTGAAATAATTTTTGACACTTGGGGTG  900

seq1  ACAATGTTGCACTCAAGAGTCATATATTACCTAACAAAACTCTAGTGCTG  950
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  ACAATGTTGCACTC-AGAGTCATATATTACCTAAC-AAACTCTAGTGCTG  948

seq1  AGCATGAGAAACACGATTACAAGTCATTGGTCAGGGGAGTTGAAGAGACT  1000
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  AGCATGAGAAACACGATTAC-AGTCATTGGTCAGGGGAGTTG-AGAGACT  996

seq1  CACTAAAAAAAAAAATATATATATATATTCCTGCTGTTGCCCTCGATTGC  1050
      ||||      | |||| | ||| | |||| |||||||||||||||| |||
seq2  CACT------ATAAATTTTTATTTTTATT-CTGCTGTTGCCCTCGA-TGC  1038

seq1  CTTCCAGAACTTGGAGTTGAGGCCCTATGGCTGAAGAAGACACCACATAA  1100
        | ||| |||||||| ||||  ||||| ||||||||||| |||| || |
seq2  --TTCAG-ACTTGGAG-TGAG--CCTAT-GCTGAAGAAGAAACCA-AT-A  1079

seq1  TTTGAAATTGAGACTTGGAGGAATCAACCTAGAACTGGTGTGG  1143
      |||||   |||||| |||||| ||| |||||| ||||| ||||
seq2  TTTGA---TGAGAC-TGGAGG-ATC-ACCTAG-ACTGGGGTGG  1115

seq1: chr13_118234446_118235057
seq2: B6Ng01-144A07.g_67_678 (reverse)

seq1  CTTTGAGGATCTCACATTACTCGGTTTTGGATAAACTATAGCTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGATCTCACATTACTCGGTTTTGGATAAACTATAGCTTCCTGCC  50

seq1  TAGGTTTAGGCTTCGATAATCTGTCACATTCTAAATGACAACAGGGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAGGCTTCGATAATCTGTCACATTCTAAATGACAACAGGGTTCC  100

seq1  AGGGAAATGGTGCTCTTAGCACATTGGTTAAACTGCTCACAGTGGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATGGTGCTCTTAGCACATTGGTTAAACTGCTCACAGTGGCTGTT  150

seq1  CATTTAGATAAACATTATACCATGAGTGGGGGGCTTTGTGCAAACTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGATAAACATTATACCATGAGTGGGGGGCTTTGTGCAAACTTCTT  200

seq1  TCCATACACAGAGTGTTTAAAATCAGTAAAGCATGTCTAGTCAAGTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACACAGAGTGTTTAAAATCAGTAAAGCATGTCTAGTCAAGTGTTG  250

seq1  AGATGTAATCATACGAATGACACTTTTTCTTCAAAGATACTCAAAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAATCATACGAATGACACTTTTTCTTCAAAGATACTCAAAGAGAA  300

seq1  TCCCCCATGTTCATTCACTTGAGCATGTGGAAATGACGAGCCTAAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATGTTCATTCACTTGAGCATGTGGAAATGACGAGCCTAAAGATG  350

seq1  ATTGAAGAATAATCTGGGGACAGCAATTCTTTCTTCTGGCTTTCAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAATAATCTGGGGACAGCAATTCTTTCTTCTGGCTTTCAGCCAT  400

seq1  ATTTGTAACATTTGAAATTCAATTATACAGTTATTTTATTCAATATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAACATTTGAAATTCAATTATACAGTTATTTTATTCAATATTATA  450

seq1  CAAAATATAATACAAAGTATTATGTAATATTATATAAAATAAAATATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATAATACAAAGTATTATGTAATATTATATAAAATAAAATATTGT  500

seq1  CTAAATAGACAATGCTAGATTATTTACTTCAGAATTACCGTTAGACACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGACAATGCTAGATTATTTACTTCAGAATTACCGTTAGACACTA  550

seq1  TGAACTTACAGTAAGGAAAACATAGTCATTATACCCGCTCTACATATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTACAGTAAGGAAAACATAGTCATTATACCCGCTCTACATATTAA  600

seq1  AACTTTGAATTC  612
      ||||||||||||
seq2  AACTTTGAATTC  612