BAC Information

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BAC

Clone NameB6Ng01-144N14
Chromosome13 (Build37)
Map Location 59,155,584 - 59,156,442
singlet/doubletsinglet
Overlap geneNtrk2
Upstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361
Downstream geneLOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N14.bB6Ng01-144N14.g
ACCDH942415DH942416
length755859
definitionDH942415|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N14, 5' end.DH942416|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcataggcaagtggatggaactagaaaatatcatcct
gagtgaggtaacccaatcacaaaagaacacacatggtatgcactcactga
taagtggatattagcccagaagctcggaatacccaagatacaattcacag
accacatgagactcgagaagaaggaagaccaaagtgtggatactttggtc
cttcctagaagggggaacaaaatacccatggaaggagttatagagacaaa
gtgtggaacagagactgaaggaatgaccatccagagactgccccacctgg
agatccatcccatatacagtcaccaaacccagacactactgtggatgcca
agtgcctgttgatagacacctgttatagctgtctcatgagaggttctacc
actgcctaataaatacaaaggtggatgctcacagccaaccattggactga
gcacagagttcccaatgggggagctagagaaaacccaaggagctgaaggg
gtttgcatccctataggaggaacaacaatatgaactaaccagtaccccac
atagctcccagggactaaaccaccaacctaagagttcacatggtggaatt
catgactccagctgcatatgtagcagaggataacctagtaggtcatcaat
gggaggagaggcccttggtcctggaaaggctctatgccccagtgtagggg
aatgccaggaccaggaagtgggagtgggtggattggcgagcagggggagg
gggtt
gaattcttaggactcactggtggaatcccttatccaaacaactttctctt
tgatgtctccattttgacagacgctgaaggacgccagcgacaatgcacgc
aaggactttcatcgggaagctgagctgctgaccaacctccagcacgagca
cattgtcaagttctacggtgtctgtgtggagggcgacccactcatcatgg
tctttgagtacatgaagcacggggacctcaacaagttccttaggtacagt
gcgcggggaggagccaacttgagcttagtgagggggaggagccaacctga
gcttagtgaggaggaggagccaacctgggcttagcgagggggaggaacca
acctgggtttagtgagggggaggagccaacctgggcttagagagggggag
gaaccaacctgggtttagtgaaggggaggagccaacctgggcttagagag
ggggaggaaccaacctgggtttagtgagggggaggagccaacctgggctt
agagaggggggaggagccaacctgggcttagtgagggggaggagccaacc
tgggcttagtgagtgggaggagccaatttgggcttgagaagagggcaaaa
gggttgctcagataaccagggcaaggatgggaagttcctgggaaaggtga
aggtaagctcaggcctttcattggagcattccttgatgatggttgcaccc
acacatgacacataaaagatagagggaaaagaagaacgcgtttctccttc
ctacaaactgtgtgtctgcaggtggtatcgctctagaagcacatgaagct
ggtgttcagctctggcatatgtgagtcgagtgttctgctggtgaccaact
cgtcattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59155584_59156442
seq2: B6Ng01-144N14.g_68_925

seq1  GAATTCTTAGGACTCACTGGTGGAATCCCTTATCCAAACAACTTTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGACTCACTGGTGGAATCCCTTATCCAAACAACTTTCTCTT  50

seq1  TGATGTCTCCATTTTGACAGACGCTGAAGGACGCCAGCGACAATGCACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTCCATTTTGACAGACGCTGAAGGACGCCAGCGACAATGCACGC  100

seq1  AAGGACTTTCATCGGGAAGCTGAGCTGCTGACCAACCTCCAGCACGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTTCATCGGGAAGCTGAGCTGCTGACCAACCTCCAGCACGAGCA  150

seq1  CATTGTCAAGTTCTACGGTGTCTGTGTGGAGGGCGACCCACTCATCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCAAGTTCTACGGTGTCTGTGTGGAGGGCGACCCACTCATCATGG  200

seq1  TCTTTGAGTACATGAAGCACGGGGACCTCAACAAGTTCCTTAGGTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTACATGAAGCACGGGGACCTCAACAAGTTCCTTAGGTACAGT  250

seq1  GCGCGGGGAGGAGCCAACTTGAGCTTAGTGAGGGGGAGGAGCCAACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGGGGAGGAGCCAACTTGAGCTTAGTGAGGGGGAGGAGCCAACCTGA  300

seq1  GCTTAGTGAGGAGGAGGAGCCAACCTGGGCTTAGCGAGGGGGAGGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGAGGAGGAGGAGCCAACCTGGGCTTAGCGAGGGGGAGGAACCA  350

seq1  ACCTGGGTTTAGTGAGGGGGAGGAGCCAACCTGGGCTTAGAGAGGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTTAGTGAGGGGGAGGAGCCAACCTGGGCTTAGAGAGGGGGAG  400

seq1  GAACCAACCTGGGTTTAGTGAAGGGGAGGAGCCAACCTGGGCTTAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAACCTGGGTTTAGTGAAGGGGAGGAGCCAACCTGGGCTTAGAGAG  450

seq1  GGGGAGGAACCAACCTGGGTTTAGTGAGGGGGAGGAGCCAACCTGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAACCAACCTGGGTTTAGTGAGGGGGAGGAGCCAACCTGGGCTT  500

seq1  AGAGAGGGGGGAGGAGCCAACCTGGGCTTAGTGAGGGGGAGGAGCCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGGGGAGGAGCCAACCTGGGCTTAGTGAGGGGGAGGAGCCAACC  550

seq1  TGGGCTTAGTGAGTGGGAGGAGCCAATTTGGGCTTGAGAAGAGGGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTAGTGAGTGGGAGGAGCCAATTTGGGCTTGAGAAGAGGGCAAAA  600

seq1  GGGTTGCTCAGATAACCAGGGCAAGGATGGGAAGTTCCTGGGAAAGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTCAGATAACCAGGGCAAGGATGGGAAGTTCCTGGGAAAGGTGA  650

seq1  AGGTAAGCTCAGGCCTTTCATTGGAGCATTCCTTGATGATGGTTGCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCTCAGGCCTTTCATTGGAGCATTCCTTGATGATGGTTGCACCC  700

seq1  ACACATGACACA-GAAAGATAGAGGGAAAAGAAGAACGCGTTTCTCCTTC  749
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  ACACATGACACATAAAAGATAGAGGGAAAAGAAGAACGCGTTTCTCCTTC  750

seq1  CTACAGACTGTGTGTCTGCAGGGTGGTATCGCTCTAGAAGCACATGAAGC  799
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  CTACAAACTGTGTGTCTGCA-GGTGGTATCGCTCTAGAAGCACATGAAGC  799

seq1  TGGTGTTCAGCTCTGGCATATGTGAGTCGAGTGTTCTGCTGGTGACCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCAGCTCTGGCATATGTGAGTCGAGTGTTCTGCTGGTGACCAAC  849

seq1  TCAGTCATTA  859
      || |||||||
seq2  TC-GTCATTA  858