BAC Information

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BAC

Clone NameB6Ng01-145C20
Chromosome13 (Build37)
Map Location 103,709,979 - 103,856,145
singlet/doubletdoublet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145C20.bB6Ng01-145C20.g
ACCDH942655DH942656
length1,148655
definitionDH942655|Mus musculus domesticus DNA, BAC clone: B6Ng01-145C20, 5' end.DH942656|Mus musculus domesticus DNA, BAC clone: B6Ng01-145C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,854,979 - 103,856,145)(103,709,979 - 103,710,632)
sequence
gaattccagacctctcatcagcatggctggaggtgcagaaatgttgaatg
gccagggtagctctcggccattaggtggtggcatggaggggactcttctc
actctgctttagagaaggacggggctcccgatgccaccatatgagcgata
tgagcagattctatgcagacttgcttttccccctttcttaatgttgaata
actttaaaaggcaaattgcaatgcaccaggattgtgaagcaaatttgaat
tcaaagtaagggtttcatcacgaattcaatcccggggttttcttttggct
tgcaactgcagacgtaggagagtcacattattgtgaaaccttgacaaaag
agaaatcccgtgattagatgcgggctttatgcataatctctagtttgcat
cctcagcacttttggggaagtgaaagccatgggagaaaagcactaggtgg
cttttctaccccaattgtttcctctctccctggcagatccacagctcaca
gcccacagccctgtgactttttttgaagcagcagtacagtcttgaacttg
aagcgaggcctgagggctcagcagctatgactgggcagaggatagaagca
gccaacccgcagttgctccctccctagttgcagcagcctaggtttccttg
gacatttttttttcccctatctccctgtctctgtgcctgcttcccactcc
tcttttccccatgtctcattctcccttctcttcctgtctctcctctcttc
ctacctcagctactgtctgccaaggcatcttggcctctgggtgcctggtt
ggctttggcctggggtggagatcccagcaggagactggagggaagcgaga
agaacagaaagtaaaggcccagtcactgcccttctacctgcttgtggcac
tgacccaggtcagccgagggctgtcctggtacaaaagggctttctcagtg
tccacttcagattttggaagcaactatctccttcgagagcagccagcagt
cctgtgtaagcactctgtcaatgctttacagacctgcctcaatccgacag
tgcttctcatctgcagaatctgactggaagctaggttcattcatggatgt
aactgttctggaatataaatttgttccctcactggacttagaagtatt
gaattctgggcgccacctcaacagtgctcaaggttacaacctgctggccg
ccacctcacagcccagaccctctggctcacatgggtcggtttccatcata
aacctttccaccccatttgagagaaactgcaaaggcaagcaaccagttgc
ctgatctgagtgtgttctggccctcggccatagccgtgggcatcctctcc
tgtcacactgtctcctccagcaaacgaccattcctgtatcatctagatct
gattctaaaatgaaccatctctacttcaagttttaactatgacgtaatgt
tttagccgggcagcggtggcgcgcgcctttaatcccagcccttgggaggc
agaggcaggcggatttctgagttcgaggccagcctgctctacagagtgag
ttccaggacagccagggctacacagagaaaccctgtctcgaaaaataaaa
ataaagaagtgatgttttagttgatcactttgaagaggtgagccagaccc
tgggttacactttagaattggaagtttgggagccaaggatactctgatgg
tgatggggactgcagagccaggattcagtgagagatgctgcaaatctgca
ggcaagcctcccagggaggtcgtggtaacctgcaccccatctcccctgcc
ttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103854979_103856145
seq2: B6Ng01-145C20.b_50_1197 (reverse)

seq1  AATACTTCCTAAGT-CAGTGAGTGAAACAAAATTTTATATATCCAGGACA  49
      ||||||| |||||| ||||||| | ||||||  ||||||| ||||| |||
seq2  AATACTT-CTAAGTCCAGTGAG-GGAACAAA--TTTATAT-TCCAGAACA  45

seq1  GTTACATACAATGAAATGAACACCTAGGCTTCCAGTCAGAATTCTGCAGG  99
      ||||||| | ||| |||||  ||||| |||||||||||| |||||||| |
seq2  GTTACAT-CCATG-AATGA--ACCTA-GCTTCCAGTCAG-ATTCTGCA-G  88

seq1  ATGGAGAAGGCACTGTCGGGTTTGGAGGCAGGGTCTGTAAAGCATTTGAC  149
      || ||||| |||||||||| ||  |||||| ||||||||||||| |||||
seq2  AT-GAGAA-GCACTGTCGGATT--GAGGCA-GGTCTGTAAAGCA-TTGAC  132

seq1  AGAGTGCTTACACAGGACTGCTGGCTGCCTCTCGAAGGGAGATAGTTGCT  199
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  AGAGTGCTTACACAGGACTGCTGGCTG-CTCTCGAA-GGAGATAGTTGCT  180

seq1  TCCAAAATCTGAAGTGGAACACTGAG-AAGCCCTTTTGTACCAGGACAGC  248
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TCCAAAATCTGAAGTGG-ACACTGAGAAAGCCCTTTTGTACCAGGACAGC  229

seq1  CCTCGGCTGACCTGGGTCAGTGCCACAAGCAGGTAGAAGGGCAGTGACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCTGACCTGGGTCAGTGCCACAAGCAGGTAGAAGGGCAGTGACTG  279

seq1  TGGCCTTACTTTCTGTTCTTCTCGCTTCCCTCCAGTCTCCTGCTGGGATC  348
       | | |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTACTTTCTGTTCTTCTCGCTTCCCTCCAGTCTCCTGCTGGGATC  329

seq1  TCCACCCCAGGCCAAAGCCAACCAGGCACCCAGAGGCCAAGATGCCTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCAGGCCAAAGCCAACCAGGCACCCAGAGGCCAAGATGCCTTGG  379

seq1  CAGACAGTAGCTGAGGTAGGAAGAGAGGAGAGACAGGAAGAGAAGGGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTAGCTGAGGTAGGAAGAGAGGAGAGACAGGAAGAGAAGGGAGA  429

seq1  ATGAGACATGGGGAAAAGAGGAGTGGGAAGCAGGCACAGAGACAGGGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACATGGGGAAAAGAGGAGTGGGAAGCAGGCACAGAGACAGGGAGA  479

seq1  TAGGGGAAAAAAAAATGTCCAAGGAAACCTAGGCTGCTGCAACTAGGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAAAAAAAATGTCCAAGGAAACCTAGGCTGCTGCAACTAGGGAG  529

seq1  GGAGCAACTGCGGGTTGGCTGCTTCTATCCTCTGCCCAGTCATAGCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAACTGCGGGTTGGCTGCTTCTATCCTCTGCCCAGTCATAGCTGCT  579

seq1  GAGCCCTCAGGCCTCGCTTCAAGTTCAAGACTGTACTGCTGCTTCAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCAGGCCTCGCTTCAAGTTCAAGACTGTACTGCTGCTTCAAAAA  629

seq1  AAGTCACAGGGCTGTGGGCTGTGAGCTGTGGATCTGCCAGGGAGAGAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGGGCTGTGGGCTGTGAGCTGTGGATCTGCCAGGGAGAGAGGA  679

seq1  AACAATTGGGGTAGAAAAGCCACCTAGTGCTTTTCTCCCATGGCTTTCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGGGGTAGAAAAGCCACCTAGTGCTTTTCTCCCATGGCTTTCAC  729

seq1  TTCCCCAAAAGTGCTGAGGATGCAAACTAGAGATTATGCATAAAGCCCGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAAAGTGCTGAGGATGCAAACTAGAGATTATGCATAAAGCCCGC  779

seq1  ATCTAATCACGGGATTTCTCTTTTGTCAAGGTTTCACAATAATGTGACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCACGGGATTTCTCTTTTGTCAAGGTTTCACAATAATGTGACTC  829

seq1  TCCTACGTCTGCAGTTGCAAGCCAAAAGAAAACCCCGGGATTGAATTCGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACGTCTGCAGTTGCAAGCCAAAAGAAAACCCCGGGATTGAATTCGT  879

seq1  GATGAAACCCTTACTTTGAATTCAAATTTGCTTCACAATCCTGGTGCATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACCCTTACTTTGAATTCAAATTTGCTTCACAATCCTGGTGCATT  929

seq1  GCAATTTGCCTTTTAAAGTTATTCAACATTAAGAAAGGGGGAAAAGCAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGCCTTTTAAAGTTATTCAACATTAAGAAAGGGGGAAAAGCAAG  979

seq1  TCTGCATAGAATCTGCTCATATCGCTCATATGGTGGCATCGGGAGCCCCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAGAATCTGCTCATATCGCTCATATGGTGGCATCGGGAGCCCCG  1029

seq1  TCCTTCTCTAAAGCAGAGTGAGAAGAGTCCCCTCCATGCCACCACCTAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTAAAGCAGAGTGAGAAGAGTCCCCTCCATGCCACCACCTAAT  1079

seq1  GGCCGAGAGCTACCCTGGCCATTCAACATTTCTGCACCTCCAGCCATGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGAGCTACCCTGGCCATTCAACATTTCTGCACCTCCAGCCATGCT  1129

seq1  GATGAGAGGTCTGGAATTC  1167
      |||||||||||||||||||
seq2  GATGAGAGGTCTGGAATTC  1148

seq1: chr13_103709979_103710632
seq2: B6Ng01-145C20.g_67_721

seq1  GAATTCTGGGCGCCACCTCAACAGTGCTCAAGGTTACAACCTGCTGGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCGCCACCTCAACAGTGCTCAAGGTTACAACCTGCTGGCCG  50

seq1  CCACCTCACAGCCCAGACCCTCTGGCTCACATGGGTCGGTTTCCATCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACAGCCCAGACCCTCTGGCTCACATGGGTCGGTTTCCATCATA  100

seq1  AACCTTTCCACCCCATTTGAGAGAAACTGCAAAGGCAAGCAACCAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCCACCCCATTTGAGAGAAACTGCAAAGGCAAGCAACCAGTTGC  150

seq1  CTGATCTGAGTGTGTTCTGGCCCTCGGCCATAGCCGTGGGCATCCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGAGTGTGTTCTGGCCCTCGGCCATAGCCGTGGGCATCCTCTCC  200

seq1  TGTCACACTGTCTCCTCCAGCAAACGACCATTCCTGTATCATCTAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACTGTCTCCTCCAGCAAACGACCATTCCTGTATCATCTAGATCT  250

seq1  GATTCTAAAATGAACCATCTCTACTTCAAGTTTTAACTATGACGTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAAAATGAACCATCTCTACTTCAAGTTTTAACTATGACGTAATGT  300

seq1  TTTAGCCGGGCAGCGGTGGCGCGCGCCTTTAATCCCAGCCCTTGGGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCGGGCAGCGGTGGCGCGCGCCTTTAATCCCAGCCCTTGGGAGGC  350

seq1  AGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGCTCTACAGAGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGCTCTACAGAGTGAG  400

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAATAAAA  450

seq1  ATAAAGAAGTGATGTTTTAGTTGATCACTTTGAAGAGGTGAGCCAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAGTGATGTTTTAGTTGATCACTTTGAAGAGGTGAGCCAGACCC  500

seq1  TGGGTTACACTTTAGAATTGGAAGTTTGGGAGCCAAGGATACTCTGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTACACTTTAGAATTGGAAGTTTGGGAGCCAAGGATACTCTGATGG  550

seq1  TGATGGGGACTGCAGAGCCAGGATTCAGTGAGAGATGCTGCAGAATCTGC  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGATGGGGACTGCAGAGCCAGGATTCAGTGAGAGATGCTGCA-AATCTGC  599

seq1  AGGCAAGCCTCCCA-GGAGGTCGTGGTAACCTGCACCCCATCT-CCCTGC  648
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  AGGCAAGCCTCCCAGGGAGGTCGTGGTAACCTGCACCCCATCTCCCCTGC  649

seq1  CTTTTT  654
      ||||||
seq2  CTTTTT  655