BAC Information

Click to search

BAC

Clone NameB6Ng01-145H13
Chromosome13 (Build37)
Map Location 110,467,100 - 110,468,251
singlet/doubletsinglet
Overlap genePde4d
Upstream geneLOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H13.bB6Ng01-145H13.g
ACCDH942865DH942866
length1,1551,092
definitionDH942865|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H13, 5' end.DH942866|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccatcactgtggccacccaagtgtcttctcaggacagataactg
ttaacaataactagtgccttcgtttacgagtagctagggcagatgaagat
aaacttagtgattctggagtggataagcacactgaagggagtgttgtaca
gatatgtaggggaggagaatcctaagtaaattcctgaggaataatagagg
caaaagccagaaggctaaccctgtcagggaagggcaaacacacctctgaa
aagaatcgtggtggaggggacagcttgtgcatcagcctgacaaaaccttt
taacagagaggtgggtggctacttcccaggaacattcattcaaaactaat
cccaggcgtgaggctgaaatggtggccacacccacaaagggggccggaag
ttactctgtaagaaatagtgcacttttttttttatcagaaaatcgaatac
attattatagtttatgtctttgaaagataacccaattttggaaataaact
tttgatgaagaaaggaaagcaggacaactatacctgattggttctgtaaa
ggtagccaggacgtttggatacaaactaggatgaaaatgtaagaatgatt
tctaactcaactcttaatccagtgtttgtgcgaaatagcactgctttctt
taagttttcaatctgctttcctccaaatcacatcggttttccttttcaaa
cacatttttaatatcaaatattattcaactgagtgcttagtatatatcct
gcggcatgctaaagtttgtctgtgtttcctaatcctcatgaaagtctatt
ttatctccacttcatagctgaggcagcagagatgggagagaaagttaaac
agtttttgagataaccaaccagtgagcaggagagtttgacattaagaccc
agacagcctgactccgcgtcttcttttcttacctgatccttcagacattt
tctaaattgctaagcattatctcaaagaacagatgttttatgtcaaagaa
aactcattttgtaatgggtggcaaaggatcagtttggcatatttaatgtg
cattcttcttagcatgtgcaggggatggcttcccaaaaggaattactgct
cttaaggaagtttgggtttctagatttttttcatactttatttgaggggg
ggtat
gaattctcacctgaggaatactgaatggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccaatcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctgaaaatcagtctggcggttcctca
gaaaattggacatggtactaccggaggatcccacaatacctctcctgggc
atatatccagaagatgttcaaaccagtaagtaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagagaaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaatttctaggcaa
atggatggtcctggagggtatcatcctgagtgaggtaacccaatcagaaa
agaacttacacaatatatactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaacaaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaaggagttatagagacatagtttggagctgagatg
aaaggaaaccatctagagactgccatatctggggatccatcccataatca
gcctccgaatgctgacaccattgcatacactaggaagattttgctgaaag
gacccagatatagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcactatggatgaatcatagtgcccccaatg
gaggagctacagaaagtacccaaggagctaaaggtttctgcaacctatag
tggaacacaatatgaactccagtaccctctcagagcttgtgtctctagct
gccatatgtatcagaagaatggccttattggcactaaatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110467100_110468251
seq2: B6Ng01-145H13.b_45_1199

seq1  GAATTCCCATCACTGTGGCCACCCAAGTGTCTTCTCAGGACAGATAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCACTGTGGCCACCCAAGTGTCTTCTCAGGACAGATAACTG  50

seq1  TTAACAATAACTAGTGCCTTCGTTTACGAGTAGCTAGGGCAGATGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATAACTAGTGCCTTCGTTTACGAGTAGCTAGGGCAGATGAAGAT  100

seq1  AAACTTAGTGATTCTGGAGTGGATAAGCACACTGAAGGGAGTGTTGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGTGATTCTGGAGTGGATAAGCACACTGAAGGGAGTGTTGTACA  150

seq1  GATATGTAGGGGAGGAGAATCCTAAGTAAATTCCTGAGGAATAATAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTAGGGGAGGAGAATCCTAAGTAAATTCCTGAGGAATAATAGAGG  200

seq1  CAAAAGCCAGAAGGCTAACCCTGTCAGGGAAGGGCAAACACACCTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCAGAAGGCTAACCCTGTCAGGGAAGGGCAAACACACCTCTGAA  250

seq1  AAGAATCGTGGTGGAGGGGACAGCTTGTGCATCAGCCTGACAAAACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCGTGGTGGAGGGGACAGCTTGTGCATCAGCCTGACAAAACCTTT  300

seq1  TAACAGAGAGGTGGGTGGCTACTTCCCAGGAACATTCATTCAAAACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGAGGTGGGTGGCTACTTCCCAGGAACATTCATTCAAAACTAAT  350

seq1  CCCAGGCGTGAGGCTGAAATGGTGGCCACACCCACAAAGGGGGCCGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCGTGAGGCTGAAATGGTGGCCACACCCACAAAGGGGGCCGGAAG  400

seq1  TTACTCTGTAAGAAATAGTGCACTTTTTTTTTTATCAGAAAATCGAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGTAAGAAATAGTGCACTTTTTTTTTTATCAGAAAATCGAATAC  450

seq1  ATTATTATAGTTTATGTCTTTGAAAGATAACCCAATTTTGGAAATAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATAGTTTATGTCTTTGAAAGATAACCCAATTTTGGAAATAAACT  500

seq1  TTTGATGAAGAAAGGAAAGCAGGACAACTATACCTGATTGGTTCTGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAAGAAAGGAAAGCAGGACAACTATACCTGATTGGTTCTGTAAA  550

seq1  GGTAGCCAGGACGTTTGGATACAAACTAGGATGAAAATGTAAGAATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCAGGACGTTTGGATACAAACTAGGATGAAAATGTAAGAATGATT  600

seq1  TCTAACTCAACTCTTAATCCAGTGTTTGTGCGAAATAGCACTGCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAACTCTTAATCCAGTGTTTGTGCGAAATAGCACTGCTTTCTT  650

seq1  TAAGTTTTCAATCTGCTTTCCTCCAAATCACATCGGTTTTCCTTTTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTCAATCTGCTTTCCTCCAAATCACATCGGTTTTCCTTTTCAAA  700

seq1  CACATTTTTAATATCAAATATTATTCAACTGAGTGCTTAGTATATATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTTAATATCAAATATTATTCAACTGAGTGCTTAGTATATATCCT  750

seq1  GCGGCATGCTAAAG-TTGTCTGTGTTTCCTAATCCTCATGAAAGTCTATT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCGGCATGCTAAAGTTTGTCTGTGTTTCCTAATCCTCATGAAAGTCTATT  800

seq1  TTATCTCCACTTCATAGCTGAGGCAGCAGAGAT-GGAGAGAAAGTTAAAC  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTATCTCCACTTCATAGCTGAGGCAGCAGAGATGGGAGAGAAAGTTAAAC  850

seq1  AGTTTTTGAGATAACCAACCAGTGAGCAGGAGAGTTTGACATT-AGACCC  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTTTTGAGATAACCAACCAGTGAGCAGGAGAGTTTGACATTAAGACCC  900

seq1  AGACAGCCTGACTCCGCGTCTTC-TTTCTTACCTGATCCTTCAGACATTT  946
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACAGCCTGACTCCGCGTCTTCTTTTCTTACCTGATCCTTCAGACATTT  950

seq1  TCT-AATTGCTAAGCATTATCTCAAAGAACAGATGTTTTATGTCAAAGAA  995
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTGCTAAGCATTATCTCAAAGAACAGATGTTTTATGTCAAAGAA  1000

seq1  AACTCA-TTTGTAATGTGTGGCAAAGGATCAGTTGGCCATA-TTAATGTG  1043
      |||||| ||||||||| ||||||||||||||||| | |||| ||||||||
seq2  AACTCATTTTGTAATGGGTGGCAAAGGATCAGTTTGGCATATTTAATGTG  1050

seq1  CCATTCCTCTTAGCATGTGCAGGGGGATGTCATCCAAAAAAGGAAATACA  1093
       ||||| |||||||||||||| ||||||| | |||  |||||||| ||| 
seq2  -CATTCTTCTTAGCATGTGCA-GGGGATGGCTTCC-CAAAAGGAATTAC-  1096

seq1  GAGCTCTGAAGGAAGTTT-GGTTTCTGAGTTTTTTCCATTACTTATTTGA  1142
        ||||| |||||||||| |||||||   |||||| |||   ||||||||
seq2  -TGCTCTTAAGGAAGTTTGGGTTTCTAGATTTTTTTCATACTTTATTTGA  1145

seq1  GGGGTGGTAT  1152
      |||| |||||
seq2  GGGGGGGTAT  1155