BAC Information

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BAC

Clone NameB6Ng01-145H16
Chromosome13 (Build37)
Map Location 47,165,298 - 47,279,481
singlet/doubletdoublet
Overlap geneAof1, Dek, LOC100039761, Ibrdc2
Upstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt
Downstream gene4931429P17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145H16.bB6Ng01-145H16.g
ACCDH942871DH942872
length1,0761,013
definitionDH942871|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H16, 5' end.DH942872|Mus musculus domesticus DNA, BAC clone: B6Ng01-145H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,165,298 - 47,166,376)(47,278,467 - 47,279,481)
sequence
gaattctccaaattttactacttttttttttttttttttgagacagagac
tcgctatgtagtctaggctagccttgaacttggaatcctcctgcctcagc
ctccagagtgctgggatttgaggtgagtgtcatcacccccagctctcttc
tcagtgttttcactggctgggttctctttgtttttttttcttagctcctc
acttgctggtgcagcttttttttctcttggccttgcttctaaaaagttaa
aggaggcccaaggataatttataagtcatgtttaagcttaatttatttga
aaagttttgctgatatatgcatacatctgtgtgaagttacggctgtattc
tacctttgagcatgtcagctatggacaatgtcagtacatggggtgtgtgt
gtgtgtgactgtgtgaatgctttggggctaaagatcattccagaaggcgt
gcacacggaagtgttaaaatgttacccacacagacattaggttcaagctc
cccttagtctgcctgtgcttcctctcctgctgggctgtaacggtggtaac
gggctgtaacggctctcctgtccacacagtgccaggagtggagagccgct
gccagcaggaatgggctgctacagagagctcaaggctccagggcagaacc
cggtgcaaacccagggtccctgggagcgcagtgttagcgatcagtgtaac
agaacatctgagtgagaatttggagttggcaaagaaacaaaagttgagct
agtcttaaaggtgttgaggctgagtagggatgtggagttccagcccctcc
tcccccgctcttggccctccccccaagctgtgtagtattaataaatacat
accttgtctcggaaacccacggctcagctggagcttcgagatcacttgtc
taccctgcttcaaggcgctgagtctgtctgtcagttctgaaaactaacat
cagagcagatgcttcgtggtgtgtctagtcagacgatgcacagcattcca
gaagtaacttgggagctgtgacattgggtaggtgttgtgtaccaacagga
gtccacctgatctaagagtgcttgga
gaattctctggggttggccctctgtgagagtaaagaggcaggcaagtttc
ccacgtgagcggagagagtgtgagtcaaagactatttcagtacgggatcc
tatttcaaccttgttgtccatctgtttgctgggaacgtaaagttgcccgg
ttccaagttagaaagcgggatgaaatcatccgctaaagcggcaataagca
agagccttgaaaaaaatggcccacagaggttacataacacctgcttatct
ggagggacatccctaaggtcctaatcttcatcccaggcaagtgagttcag
ggatccaggtcagcaaaaaggccaaagaagaacatctttcaaggcaggga
attcatccccaccgtccactaaagtgtctggggagcacaaggcagagcca
cttggggaaatggatatgcaggaagctagtgtgttcagggctaatgacga
gagctcaggatccaattttaatacgaaagaaaattctaaggtcatgatta
taatttcatccgtgttttaggccaagtgatccctcatagtttggcgagag
acctgaactgcagggacagcgttatttgtgtgatgaaacgaagtccagtt
ttgaacaaatgacctgcaaacaaacttttagattatttacaagttatggc
caatatgaaaaaaaaaaagggtcacaacccctcccccttgaggttttgtt
ttgggttgtgttgttgttgttgctgctgctgctgttttctttacagctgc
tggagaaaataggaagtatacctgtgtgtgaccaacccattgagcttcaa
tgtcctttccttacgagtcacttctctggaccaactccaaaggggcccta
agtaaactgcacccagtgcaagcacaggtattcgtttgtgggaagcagaa
cttgttgggaaataacggtctacactagaaagaggcagtgagtggtagtc
tcagaggtgtgggggaggatctattcacttcctatggacacaaattgcta
ttattagtccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47165298_47166376
seq2: B6Ng01-145H16.b_48_1123

seq1  GAATTCTCCAAATTTTACTACTTTTTTTTTTTTTTTTTTGAGACAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAATTTTACTACTTTTTTTTTTTTTTTTTTGAGACAGAGAC  50

seq1  TCGCTATGTAGTCTAGGCTAGCCTTGAACTTGGAATCCTCCTGCCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTATGTAGTCTAGGCTAGCCTTGAACTTGGAATCCTCCTGCCTCAGC  100

seq1  CTCCAGAGTGCTGGGATTTGAGGTGAGTGTCATCACCCCCAGCTCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTGCTGGGATTTGAGGTGAGTGTCATCACCCCCAGCTCTCTTC  150

seq1  TCAGTGTTTTCACTGGCTGGGTTCTCTTTGTTTTTTTTTCTTAGCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTTCACTGGCTGGGTTCTCTTTGTTTTTTTTTCTTAGCTCCTC  200

seq1  ACTTGCTGGTGCAGCTTTTTTTTCTCTTGGCCTTGCTTCTAAAAAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGGTGCAGCTTTTTTTTCTCTTGGCCTTGCTTCTAAAAAGTTAA  250

seq1  AGGAGGCCCAAGGATAATTTATAAGTCATGTTTAAGCTTAATTTATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCCAAGGATAATTTATAAGTCATGTTTAAGCTTAATTTATTTGA  300

seq1  AAAGTTTTGCTGATATATGCATACATCTGTGTGAAGTTACGGCTGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGCTGATATATGCATACATCTGTGTGAAGTTACGGCTGTATTC  350

seq1  TACCTTTGAGCATGTCAGCTATGGACAATGTCAGTACATGGGGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGAGCATGTCAGCTATGGACAATGTCAGTACATGGGGTGTGTGT  400

seq1  GTGTGTGACTGTGTGAATGCTTTGGGGCTAAAGATCATTCCAGAAGGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGACTGTGTGAATGCTTTGGGGCTAAAGATCATTCCAGAAGGCGT  450

seq1  GCACACGGAAGTGTTAAAATGTTACCCACACAGACATTAGGTTCAAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGGAAGTGTTAAAATGTTACCCACACAGACATTAGGTTCAAGCTC  500

seq1  CCCTTAGTCTGCCTGTGCTTCCTCTCCTGCTGGGCTGTAACGGTGGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGTCTGCCTGTGCTTCCTCTCCTGCTGGGCTGTAACGGTGGTAAC  550

seq1  GGGCTGTAACGGCTCTCCTGTCCACACAGTGCCAGGAGTGGAGAGCCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAACGGCTCTCCTGTCCACACAGTGCCAGGAGTGGAGAGCCGCT  600

seq1  GCCAGCAGGAATGGGCTGCTACAGAGAGCTCAAGGCTCCAGGGCAGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGGAATGGGCTGCTACAGAGAGCTCAAGGCTCCAGGGCAGAACC  650

seq1  CGGTGCAAACCCAGGGTCCCTGGGAGCGCAGTGTTAGCGATCAGTGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCAAACCCAGGGTCCCTGGGAGCGCAGTGTTAGCGATCAGTGTAAC  700

seq1  AGAACATCTGAGTGAGAATTTGGAGTTGGCAAAGAAACAAAAGTTGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCTGAGTGAGAATTTGGAGTTGGCAAAGAAACAAAAGTTGAGCT  750

seq1  AGTCTTAAAGGTGTTGAGGCTGAGTAGGGATGTGGAGTTCCAGCCCC-CC  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTCTTAAAGGTGTTGAGGCTGAGTAGGGATGTGGAGTTCCAGCCCCTCC  800

seq1  TCCCCCGCTCTTGGCCCTCCCCCCAAGCTGTGTAGTATTAATAAATACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGCTCTTGGCCCTCCCCCCAAGCTGTGTAGTATTAATAAATACAT  850

seq1  ACCTTGTCTCGGAAACCCACGGCTCAGGCTGGAGCTTCGGAGATCACTTG  899
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  ACCTTGTCTCGGAAACCCACGGCTCA-GCTGGAGCTTC-GAGATCACTTG  898

seq1  TCTACCCTGCTTCAAGGCGCTGAGTCTGTCTGTCAGTTCTGAAAACTAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTACCCTGCTTCAAGGCGCTGAGTCTGTCTGTCAGTTCTGAAAACTAA-  947

seq1  CATCAGAGCAGATGCTCCGTGGTGTGTCTAGTCAGACAGATGCACAGCAT  999
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  CATCAGAGCAGATGCTTCGTGGTGTGTCTAGTCAGAC-GATGCACAGCAT  996

seq1  TCCAG-AGAAACCTGGGAGCTGTGACA-TGTGTAGGTGATGGTTGTCACC  1047
      ||||| || ||| |||||||||||||| || ||||||| ||  ||| |||
seq2  TCCAGAAGTAACTTGGGAGCTGTGACATTGGGTAGGTGTTG--TGT-ACC  1043

seq1  AAACAGGAG-CCACCTGTACTAAGA-TGCTTGGA  1079
       |||||||| |||||||  |||||| ||||||||
seq2  -AACAGGAGTCCACCTGATCTAAGAGTGCTTGGA  1076

seq1: chr13_47278467_47279481
seq2: B6Ng01-145H16.g_68_1080 (reverse)

seq1  CTTGGACT-ATAATAGCAATTCTGTTGTCCATAGGAAGTGAATAAGAATC  49
      | |||||| |||||||||||| || |||||||||||||||||||   |||
seq2  CCTGGACTAATAATAGCAATT-TG-TGTCCATAGGAAGTGAATA--GATC  46

seq1  CTCCCCACAC-CCTCTGAGACCTACCACTCACTGCCTCTTTCTAGTGTAG  98
      |||||| ||| ||||||||| |||||||||||||||||||||||||||||
seq2  CTCCCC-CACACCTCTGAGA-CTACCACTCACTGCCTCTTTCTAGTGTAG  94

seq1  ACCGTTATTTCCCAACAAGTTCTGCTTCCCCACAAACGAATACCTGTGCT  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCGTTATTTCCCAACAAGTTCTGCTT-CCCACAAACGAATACCTGTGCT  143

seq1  TGCACTGGGTGCAGTTTACTTAGGG-CCCTTTGGAGTTGGTCCAGAGAAG  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCACTGGGTGCAGTTTACTTAGGGCCCCTTTGGAGTTGGTCCAGAGAAG  193

seq1  TGACTCGTAAGG-AAGGACATTGAAGCTCAAT-GGTTGGTCACACACAGG  245
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TGACTCGTAAGGAAAGGACATTGAAGCTCAATGGGTTGGTCACACACAGG  243

seq1  TATACTTCCTATTTTCTCCAGCAGCTGTAAAGAAAACAGCAGCAGCAGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCCTATTTTCTCCAGCAGCTGTAAAGAAAACAGCAGCAGCAGCA  293

seq1  ACAACAACAACACAACCCAAAACAAAACCTCAAGGGGGAGGGGTTGTGAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACACAACCCAAAACAAAACCTCAAGGGGGAGGGGTTGTGAC  343

seq1  CCTTTTTTTTTTTCATATTGGCCATAACTTGTAAATAATCTAAAAGTTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTTTTCATATTGGCCATAACTTGTAAATAATCTAAAAGTTTG  393

seq1  TTTGCAGGTCATTTGTTCAAAACTGGACTTCGTTTCATCACACAAATAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGTCATTTGTTCAAAACTGGACTTCGTTTCATCACACAAATAAC  443

seq1  GCTGTCCCTGCAGTTCAGGTCTCTCGCCAAACTATGAGGGATCACTTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCTGCAGTTCAGGTCTCTCGCCAAACTATGAGGGATCACTTGGC  493

seq1  CTAAAACACGGATGAAATTATAATCATGACCTTAGAATTTTCTTTCGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACACGGATGAAATTATAATCATGACCTTAGAATTTTCTTTCGTAT  543

seq1  TAAAATTGGATCCTGAGCTCTCGTCATTAGCCCTGAACACACTAGCTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGGATCCTGAGCTCTCGTCATTAGCCCTGAACACACTAGCTTCC  593

seq1  TGCATATCCATTTCCCCAAGTGGCTCTGCCTTGTGCTCCCCAGACACTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATCCATTTCCCCAAGTGGCTCTGCCTTGTGCTCCCCAGACACTTT  643

seq1  AGTGGACGGTGGGGATGAATTCCCTGCCTTGAAAGATGTTCTTCTTTGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACGGTGGGGATGAATTCCCTGCCTTGAAAGATGTTCTTCTTTGGC  693

seq1  CTTTTTGCTGACCTGGATCCCTGAACTCACTTGCCTGGGATGAAGATTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTGACCTGGATCCCTGAACTCACTTGCCTGGGATGAAGATTAG  743

seq1  GACCTTAGGGATGTCCCTCCAGATAAGCAGGTGTTATGTAACCTCTGTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGGGATGTCCCTCCAGATAAGCAGGTGTTATGTAACCTCTGTGG  793

seq1  GCCATTTTTTTCAAGGCTCTTGCTTATTGCCGCTTTAGCGGATGATTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTTTCAAGGCTCTTGCTTATTGCCGCTTTAGCGGATGATTTCA  843

seq1  TCCCGCTTTCTAACTTGGAACCGGGCAACTTTACGTTCCCAGCAAACAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTTTCTAACTTGGAACCGGGCAACTTTACGTTCCCAGCAAACAGA  893

seq1  TGGACAACAAGGTTGAAATAGGATCCCGTACTGAAATAGTCTTTGACTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACAAGGTTGAAATAGGATCCCGTACTGAAATAGTCTTTGACTCA  943

seq1  CACTCTCTCCGCTCACGTGGGAAACTTGCCTGCCTCTTTACTCTCACAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCGCTCACGTGGGAAACTTGCCTGCCTCTTTACTCTCACAGA  993

seq1  GGGCCAACCCCAGAGAATTC  1015
      ||||||||||||||||||||
seq2  GGGCCAACCCCAGAGAATTC  1013