BAC Information

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BAC

Clone NameB6Ng01-145O06
Chromosome13 (Build37)
Map Location 52,422,245 - 52,608,348
singlet/doubletdoublet
Overlap geneLOC100040321, Diras2
Upstream genePpia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040572, Syk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145O06.bB6Ng01-145O06.g
ACCDH943174DH943175
length1,1231,060
definitionDH943174|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O06, 5' end.DH943175|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,422,245 - 52,423,386)(52,607,263 - 52,608,348)
sequence
gaattctttcttcctctttccactgtggctactgtgagaaaacctctttg
tgccactgcttttcaatcttaatttttctttttaaaactggtggctgaac
cgggagtgttagggctgacagtgtccctaaggattctggtgacaggcaga
gatgacaagctatcactaaaggcaagtgatagtgagtgactggatctgcc
tccaggacacacaaaacggctcggttcccttcagccttatatgcagatgc
tgaggtgcttagtggttttatatcctcttgtgagtccacgtctagaaact
cagaccaaaacaaaaggttgttccttttccacttcccacacttccagtta
gctgtggtctctgtggtgtgaaacgttccagaaacaaacacatcccaagc
attaagcgtcgcactgttcagctgccatgtctctatgctgcctcggggtg
aacagaccttcgtcactatcaatgctaagtaggttcccagtcactcgcct
cttagttaccatcatgggtgtcaacttggtatctcaggactgcaaaacct
gtggtctagtaccctgttttcaaactccgtagcaaccccaaagcttaata
atgtcagtgccaccagctcagatcacctgaagagaaggtgtaattccttc
aggagaaagggggagagctctccaggattaaggagacagaagaagcttaa
agtggctacatcctagaaagaagtaaagcataccctttatcaagctgggt
acaccgaggctgcagacagctctgggagctgaggataggagtccagctga
cctaggtcacagactgtgtttctccctttcagaattcagcatttgttcct
gatctctgagacacatgattggcaagaagtcagccctcctgtgggtttac
agcccttctctttctctggtagctgggaataactcaggggcatacttatt
tcagccttccttgtgtgtgtagaccaggtcgcatggtgtagagcatccct
gacctgaacactgccagagccggaactctttttgtcctcagagctgatgg
cctccctgcagacgcatgcacttggcgctgtctttcgaacggctccttgg
gggcttgagcgtccttccgtcat
gaattccaggacagcaagggctacacagagaaaccctgtcttgaaaaacc
aaaaaaacaaaaaacaaaaaccaaccaaccaaacaaacaaaaaacacaaa
aacaacaacaacaacaacaaaaaaccccaaaaaacaaaaacccaaaaact
ttggatttcaattctatgctaattctaagtgtataaaaatgttattggga
atgatctagataaccaccttatgtaatggcacagccatagcgtcagttcc
accccgcctcccttccccctcccctgccccccatgtcaagatgttccact
ttcctagtccccagcaggcaactgtcagttttaatcaggctgtggtctgc
acattctctctagctcttctgcttaccctaggaatgcatttactctgcat
gtggcttctcacagcgggctcttctgttgtgagtggaaggccagtcccat
tatctattaggagcaccatctaacctgttgtatttcatgtgttattatca
caaagggttcatttccgttcctttgggtctaggagccagttttagagcca
gcagacaccgggttacacacaggtgattactgcttccatcagcagttttc
ttaactaacaactttacagagagataattcacccaattaaaataattaaa
acttatgatttgctgcttctggccccatcaccattatcaatggtagagga
tgtacccatacctgaccaaccacctctcagccctcagtttcttctcacct
catcccagggcaaccacagagaaactctctctccctgtcagcactgttac
aaacaccagaggctatcaacgtaggaagggaaaaatgttgttttgttcaa
agttttagaggccctccaatgaccggttgataaacccctgcttgagctgg
tgatgttcatggtaggagtgtgctcaaagcaaagagaaaggtggacagat
cacagacctcagcctccccgacttttactagaccctcttcttaaaggttc
acagccttagcactagctcttaaagatggcagaatttgacaagcttttgc
tttgtgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_52422245_52423386
seq2: B6Ng01-145O06.b_47_1169

seq1  GAATTCTTTCTTCCTCTTTCCACTGTGGCTACTGTGAGAAAACCTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCCTCTTTCCACTGTGGCTACTGTGAGAAAACCTCTTTG  50

seq1  TGCCACTGCTTTTCAATCTTAATTTTTCTTTTTAAAACTGGTGGCTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGCTTTTCAATCTTAATTTTTCTTTTTAAAACTGGTGGCTGAAC  100

seq1  CGGGAGTGTTAGGGCTGACAGTGTCCCTAAGGATTCTGGTGACAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGTGTTAGGGCTGACAGTGTCCCTAAGGATTCTGGTGACAGGCAGA  150

seq1  GATGACAAGCTATCACTAAAGGCAAGTGATAGTGAGTGACTGGATCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGCTATCACTAAAGGCAAGTGATAGTGAGTGACTGGATCTGCC  200

seq1  TCCAGGACACACAAAACGGCTCGGTTCCCTTCAGCCTTATATGCAGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACACACAAAACGGCTCGGTTCCCTTCAGCCTTATATGCAGATGC  250

seq1  TGAGGTGCTTAGTGGTTTTATATCCTCTTGTGAGTCCACGTCTAGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCTTAGTGGTTTTATATCCTCTTGTGAGTCCACGTCTAGAAACT  300

seq1  CAGACCAAAACAAAAGGTTGTTCCTTTTCCACTTCCCACACTTCCAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAAACAAAAGGTTGTTCCTTTTCCACTTCCCACACTTCCAGTTA  350

seq1  GCTGTGGTCTCTGTGGTGTGAAACGTTCCAGAAACAAACACATCCCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTCTCTGTGGTGTGAAACGTTCCAGAAACAAACACATCCCAAGC  400

seq1  ATTAAGCGTCGCACTGTTCAGCTGCCATGTCTCTATGCTGCCTCGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCGTCGCACTGTTCAGCTGCCATGTCTCTATGCTGCCTCGGGGTG  450

seq1  AACAGACCTTCGTCACTATCAATGCTAAGTAGGTTCCCAGTCACTCGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCTTCGTCACTATCAATGCTAAGTAGGTTCCCAGTCACTCGCCT  500

seq1  CTTAGTTACCATCATGGGTGTCAACTTGGTATCTCAGGACTGCAAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTACCATCATGGGTGTCAACTTGGTATCTCAGGACTGCAAAACCT  550

seq1  GTGGTCTAGTACCCTGTTTTCAAACTCCGTAGCAACCCCAAAGCTTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTAGTACCCTGTTTTCAAACTCCGTAGCAACCCCAAAGCTTAATA  600

seq1  ATGTCAGTGCCACCAGCTCAGATCACCTGAAGAGAAGGTGTAATTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGTGCCACCAGCTCAGATCACCTGAAGAGAAGGTGTAATTCCTTC  650

seq1  AGGAGAAAGGGGGAGAGCCCTCCAGGATTAAGGAGACAGAAGAAGCTTAA  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGAGAAAGGGGGAGAGCTCTCCAGGATTAAGGAGACAGAAGAAGCTTAA  700

seq1  AGTGGCTACATCCTAGAAAGAAGTAAAGCATACCCTTTATCAAGCTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTACATCCTAGAAAGAAGTAAAGCATACCCTTTATCAAGCTGGGT  750

seq1  ACACCGAGGCTGCAGACAGCTCTGGGAGCTGAGGATAGGAGTCCAGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGAGGCTGCAGACAGCTCTGGGAGCTGAGGATAGGAGTCCAGCTGA  800

seq1  CCTAGGTCACAGACTGTGTTTCTCCCTTTCAGAATTCAGCATTTG-TCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTAGGTCACAGACTGTGTTTCTCCCTTTCAGAATTCAGCATTTGTTCCT  850

seq1  GATCTCTGAGACACATGATTGGCAAGAAGTCAGCCCTCCTGTGGGTTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGACACATGATTGGCAAGAAGTCAGCCCTCCTGTGGGTTTAC  900

seq1  AGCCCTTCTCTTTCTCTGGTAGCTGGGGAATAAACTCAGGGGCATACCTA  949
      |||||||||||||||||||||||| |||||| |||||||||||||| || 
seq2  AGCCCTTCTCTTTCTCTGGTAGCT-GGGAAT-AACTCAGGGGCATA-CTT  947

seq1  ATTTCAGCCCTTCCTTGTGTGTGTAGACCAGGTCGCATGGTGTAGAGCAT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAG-CCTTCCTTGTGTGTGTAGACCAGGTCGCATGGTGTAGAGCAT  996

seq1  CCCTGACCTGAACACCTGCCAGAGCCGGAAACTCCTTTTGTCCTCAGGAG  1049
      |||||||||||||| ||||||||||||| ||||| ||||||||||| |||
seq2  CCCTGACCTGAACA-CTGCCAGAGCCGG-AACTCTTTTTGTCCTCA-GAG  1043

seq1  CTGATGGCTCTCCCTGCAGACGCATGCACGTGGCGGCTGTCCCTTCTGAC  1099
      |||||||| |||||||||||||||||||| |||| |||||  |||  || 
seq2  CTGATGGC-CTCCCTGCAGACGCATGCACTTGGC-GCTGT--CTTTCGA-  1088

seq1  ACGGCTCCTTTGGGGGCCTTGAAGCGTCCCCCTTTCCCGTCAT  1142
      ||||||||||  |||| |||| |||||||     | |||||||
seq2  ACGGCTCCTT--GGGGGCTTG-AGCGTCC-----TTCCGTCAT  1123

seq1: chr13_52607263_52608348
seq2: B6Ng01-145O06.g_69_1128 (reverse)

seq1  CAAACACAAAGCAAAAGCCTGTGTCAGATTCCTGCCCATCTTCTAAGGAG  50
      ||||||||||||||||||   ||||| ||| ||| ||||||| ||| |||
seq2  CAAACACAAAGCAAAAGC--TTGTCAAATT-CTG-CCATCTT-TAA-GAG  44

seq1  CTATGTGCTAAAGGCTGTGGAACCTTTAAGAAGTGGGGTCTAGTGAAAAG  100
      ||| ||||| |||||||| ||||||||||||||  ||||||||| |||||
seq2  CTA-GTGCT-AAGGCTGT-GAACCTTTAAGAAG-AGGGTCTAGT-AAAAG  89

seq1  CTCGGGGGAGGCTGAGGGTCTGTGATCTGTCCCACCTTTCTCTTTTGCTC  150
       || ||||||||||| |||||||||||||| ||||||||||| |||||| 
seq2  -TC-GGGGAGGCTGA-GGTCTGTGATCTGT-CCACCTTTCTC-TTTGCT-  133

seq1  TGGCGCACACTCCTACCATGAAACATCACCCAGGCTCAAAGCAGGGGTTT  200
      | | |||||||||||||||| |||||||||   |||| ||||||||||||
seq2  TTGAGCACACTCCTACCATG-AACATCACC--AGCTC-AAGCAGGGGTTT  179

seq1  ATCAACCGGTCATTGGAGGGACCTCCTAAAACTTGTGAACCAAAACAACA  250
      |||||||||||||||||||| ||| ||||||||| |||| ||||||||||
seq2  ATCAACCGGTCATTGGAGGG-CCT-CTAAAACTT-TGAA-CAAAACAACA  225

seq1  TTTTTTCCCTTCCTACGTTGATAGCCTCTGGTGTTTGTTACAGTGCTGAC  300
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -TTTTTCCCTTCCTACGTTGATAGCCTCTGGTGTTTGTAACAGTGCTGAC  274

seq1  AGGGGGAGAGAGTTTCTCTGTGGTTGCCCTGGGATGAGGTGAGAAGAAAC  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGAGTTTCTCTGTGGTTGCCCTGGGATGAGGTGAGAAGAAAC  324

seq1  TGAGGGCTGAGAGGTGGTTGGTCAGGTATGGGTACATCCTCTACCATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTGAGAGGTGGTTGGTCAGGTATGGGTACATCCTCTACCATTGA  374

seq1  TAATGGTGATGGGGCCAGAAGCAGCAAATCATAAGTTTTAATTATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGATGGGGCCAGAAGCAGCAAATCATAAGTTTTAATTATTTTAA  424

seq1  TTGGGTGAATTATCTCTCTGTAAAGTTGTTAGTTAAGAAAACTGCTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGAATTATCTCTCTGTAAAGTTGTTAGTTAAGAAAACTGCTGATG  474

seq1  GAAGCAGTAATCACCTGTGTGTAACCCGGTGTCTGCTGGCTCTAAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTAATCACCTGTGTGTAACCCGGTGTCTGCTGGCTCTAAAACTG  524

seq1  GCTCCTAGACCCAAAGGAACGGAAATGAACCCTTTGTGATAATAACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAGACCCAAAGGAACGGAAATGAACCCTTTGTGATAATAACACAT  574

seq1  GAAATACAACAGGTTAGATGGTGCTCCTAATAGATAATGGGACTGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAACAGGTTAGATGGTGCTCCTAATAGATAATGGGACTGGCCTT  624

seq1  CCACTCACAACAGAAGAGCCCGCTGTGAGAAGCCACATGCAGAGTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACAACAGAAGAGCCCGCTGTGAGAAGCCACATGCAGAGTAAATG  674

seq1  CATTCCTAGGGTAAGCAGAAGAGCTAGAGAGAATGTGCAGACCACAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTAGGGTAAGCAGAAGAGCTAGAGAGAATGTGCAGACCACAGCCT  724

seq1  GATTAAAACTGACAGTTGCCTGCTGGGGACTAGGAAAGTGGAACATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAACTGACAGTTGCCTGCTGGGGACTAGGAAAGTGGAACATCTTG  774

seq1  ACATGGGGGGCAGGGGAGGGGGAAGGGAGGCGGGGTGGAACTGACGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGGGCAGGGGAGGGGGAAGGGAGGCGGGGTGGAACTGACGCTAT  824

seq1  GGCTGTGCCATTACATAAGGTGGTTATCTAGATCATTCCCAATAACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCCATTACATAAGGTGGTTATCTAGATCATTCCCAATAACATTT  874

seq1  TTATACACTTAGAATTAGCATAGAATTGAAATCCAAAGTTTTTGGGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACTTAGAATTAGCATAGAATTGAAATCCAAAGTTTTTGGGTTTT  924

seq1  TGTTTTTTGGGGTTTTTTGTTGTTGTTGTTGTTGTTTTTGTGTTTTTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGGGGTTTTTTGTTGTTGTTGTTGTTGTTTTTGTGTTTTTTGT  974

seq1  TTGTTTGGTTGGTTGGTTTTTGTTTTTTGTTTTTTTGGTTTTTCAAGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGTTGGTTGGTTTTTGTTTTTTGTTTTTTTGGTTTTTCAAGACA  1024

seq1  GGGTTTCTCTGTGTAGCCCTTGCTGTCCTGGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTGTAGCCCTTGCTGTCCTGGAATTC  1060