BAC Information

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BAC

Clone NameB6Ng01-145P06
Chromosome13 (Build37)
Map Location 80,331,593 - 80,485,357
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145P06.bB6Ng01-145P06.g
ACCDH943222DH943223
length1,167978
definitionDH943222|Mus musculus domesticus DNA, BAC clone: B6Ng01-145P06, 5' end.DH943223|Mus musculus domesticus DNA, BAC clone: B6Ng01-145P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,484,171 - 80,485,357)(80,331,593 - 80,332,416)
sequence
gaattcagttaacttagcaaatataaactaaatcatgcaattttgttctt
ccacccaaagtatatcacatacttgagcttaatgaatacattctaagaat
aacaaattacattaaattgcaaatgtccattgagccaaataaaactactg
tatctttcatgttcagtaaatattatttcagcccatggattcaccatttc
acagagtgtaaagcagtttggcaatgcagagtcatctgaaaatattccag
agaatctgagaaagcaggctttacagcatctcttagctacctggctaaga
aggctcacttgtggtgtatccttgacatattagaaaactatgatggtgag
agttatgtagttatgtagttatagagtcccagagagtaaaacctagagat
gaatgaatcttggtccatctgatagtttagacaaccatacctattgtcac
aaaaattcaagagatgtggatgatatcacaaatatcaaaggcctactaaa
tctgtcgtgtttgcaccctcattgtggacaacccaacaaagaaatcacat
gaattctctgattttttttttaaaaagctaagtctacgactcaaaatggc
accataattttaacataaattggatgtggaagaccattcaaaaatttagt
tagtataaagagaagataatataattccaacatccaggttaaaaatctaa
accttcttcagagactcctttctctatcacattgattcagtaatggttca
gaatacttgctaatagtgaaaactgctaaagcagatattttctgtggtat
ggtaaagcatgagcaatattagttttctatgtatatgtgcaagtacatgt
atacatgtacactctgtttacatgttatttgtgttcctgcactctttgac
ttctgatagcttataaatatatatttttttcttttttatatacaggataa
gtctaaattttattgtattaaattatttaaaatttattaaaatataattt
aaagtgtaaaactgttattgatatttgcaaatatttgacatattgaacga
tccattacaaatatggaaaatttggttttatcctctagtttatcttacat
atctatttctttatgacaatgaacagaggtagttgtttccacacttaatc
agtgtttctcaaaaata
gaattccctgtatggaaatgccttcaagaaataatagctttgtataatct
ctttatatattagagataaaacttatccaataatatagagtacttataaa
actaaattaaactgaaacatttctattcacctacaaatgctatacaacag
ttctaataattgagtctttccacttcatcttgactcaatgcctttgtttc
atgaggcagcaaatctgctgacaattcccattgatccacagatcagtgga
aacaaagatttttttcatttgaggaattcattccagggcaataaaccaca
aattgctcctaacttgagattactggaatatttccatattcatatatacc
atgtgtatacaaatacacacacaaacatataaatgtgtatgtatgtatgt
atacattgtggatgggtctggtgctgtttgtatgttgatgctaattctgc
tctcctgggtggggttgcaggcatggagtgacttcttgtgagccaatccc
ctaatgaataaaggatccaatcactgggcaagaaggtgggatttccatct
tggagaggggaagagaggaagcaggagagattaaggtccttttggacagg
gatagtctaaagacaagatgtaattactagtgcctcctggtttcaatggc
acatccatcaggatttgccaccaaaggatttagattttcataaggcttac
aagattaggactttagtttttgcaacgatagattgagttaccactgtttc
tgaactaactctatgtggcatttttccttcctgcagtggttcaagagaga
aaggtacagcaaaaaaagtgtaggtttgccagatgtgcacacaaaggcct
tgggagatttgaagcttagagttggcatggtatatgcctcacagtgggaa
cttagtgagctgggtagagacatttcatgagcttcaggccagaaagtatt
cacaagatattaaaagttcggcattgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80484171_80485357
seq2: B6Ng01-145P06.b_48_1214 (reverse)

seq1  TATTTTTGAGAAAAAACTGCTGATTTAAAAGT-TGTGAACAACTTACCTT  49
      ||||||||||||| |    ||||||   |||| ||  |||||| ||||  
seq2  TATTTTTGAGAAACA----CTGATT---AAGTGTGGAAACAAC-TACC--  40

seq1  TCTGTTCCCTCTGTCCTTAAGAAAATAGTATATGTAAGATAAAACCTAGA  99
      ||||||  |  |||| | ||| |||||| ||||||||||||||  |||||
seq2  TCTGTT--CATTGTCATAAAG-AAATAG-ATATGTAAGATAAA--CTAGA  84

seq1  -GATAAAA-CAAATTTTCCATATTTTGGTAATTAGATCTGTTCAAATATG  147
       ||||||| ||||||||||||||||  |||| | |||| |||| ||||||
seq2  GGATAAAACCAAATTTTCCATATTT--GTAA-TGGATC-GTTC-AATATG  129

seq1  TCAAATTATTTGCAAATATCAATAACATTTTTACACTTTAAATTATATTT  197
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAAA-TATTTGCAAATATCAATAACAGTTTTACACTTTAAATTATATTT  178

seq1  TAATAAATTTTAAATAATTTAATACAATAAAATTTAGACTTATCCTGTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTTTAAATAATTTAATACAATAAAATTTAGACTTATCCTGTAT  228

seq1  ATAAAAAAGAAAAAAATATATATTTAATAGCTATCAGAAGTCAAAGAGTG  297
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  ATAAAAAAGAAAAAAATATATATTTATAAGCTATCAGAAGTCAAAGAGTG  278

seq1  CAGGAACAACAAATAACATGTAAACAGAGTGTACATGTATACATGTACTT  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAC-ACAAATAACATGTAAACAGAGTGTACATGTATACATGTACTT  327

seq1  GCACATATACATAGAAAACTAATATTGCTCATGCTTTACCATACCACAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATACATAGAAAACTAATATTGCTCATGCTTTACCATACCACAGA  377

seq1  AAATATCTGCTTTAGCAGTTTTCACTATTAGCAAGTATTCTGAACCATTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTGCTTTAGCAGTTTTCACTATTAGCAAGTATTCTGAACCATTA  427

seq1  CTGAATCAATGTGATAGAGAAAGGAGTCTCTGAAGAAGGTTTAGATTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAATGTGATAGAGAAAGGAGTCTCTGAAGAAGGTTTAGATTTTT  477

seq1  AACCTGGATGTTGGAATTATATTATCTTCTCTTTATACTAACTAAATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGATGTTGGAATTATATTATCTTCTCTTTATACTAACTAAATTTT  527

seq1  TGAATGGTCTTCCACATCCAATTTATGTTAAAATTATGGTGCCATTTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTCTTCCACATCCAATTTATGTTAAAATTATGGTGCCATTTTGA  577

seq1  GTCGTAGACTTAGCTTTTTAAAAAAAAAATCAGAGAATTCATGTGATTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAGACTTAGCTTTTTAAAAAAAAAATCAGAGAATTCATGTGATTTC  627

seq1  TTTGTTGGGTTGTCCACAATGAGGGTGCAAACACGACAGATTTAGTAGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGGTTGTCCACAATGAGGGTGCAAACACGACAGATTTAGTAGGC  677

seq1  CTTTGATATTTGTGATATCATCCACATCTCTTGAATTTTTGTGACAATAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATATTTGTGATATCATCCACATCTCTTGAATTTTTGTGACAATAG  727

seq1  GTATGGTTGTCTAAACTATCAGATGGACCAAGATTCATTCATCTCTAGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTTGTCTAAACTATCAGATGGACCAAGATTCATTCATCTCTAGGT  777

seq1  TTTACTCTCTGGGACTCTATAACTACATAACTACATAACTCTCACCATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTCTGGGACTCTATAACTACATAACTACATAACTCTCACCATCA  827

seq1  TAGTTTTCTAATATGTCAAGGATACACCACAAGTGAGCCTTCTTAGCCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTAATATGTCAAGGATACACCACAAGTGAGCCTTCTTAGCCAG  877

seq1  GTAGCTAAGAGATGCTGTAAAGCCTGCTTTCTCAGATTCTCTGGAATATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAAGAGATGCTGTAAAGCCTGCTTTCTCAGATTCTCTGGAATATT  927

seq1  TTCAGATGACTCTGCATTGCCAAACTGCTTTACACTCTGTGAAATGGTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGACTCTGCATTGCCAAACTGCTTTACACTCTGTGAAATGGTGA  977

seq1  ATCCATGGGCTGAAATAATATTTACTGAACATGAAAGATACAGTAGTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGGCTGAAATAATATTTACTGAACATGAAAGATACAGTAGTTTT  1027

seq1  ATTTGGCTCAATGGACATTTGCAATTTAATGTAATTTGTTATTCTTAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTCAATGGACATTTGCAATTTAATGTAATTTGTTATTCTTAGAA  1077

seq1  TGTATTCATTAAGCTCAAGTATGTGATATACTTTGGGTGGAAGAACAAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATTAAGCTCAAGTATGTGATATACTTTGGGTGGAAGAACAAAA  1127

seq1  TTGCATGATTTAGTTTATATTTGCTAAGTTAACTGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGATTTAGTTTATATTTGCTAAGTTAACTGAATTC  1167

seq1: chr13_80331593_80332416
seq2: B6Ng01-145P06.g_67_890

seq1  GAATTCCCTGTATGGAAATGCCTTCAAGAAATAATAGCTTTGTATAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTATGGAAATGCCTTCAAGAAATAATAGCTTTGTATAATCT  50

seq1  CTTTATATATTAGAGATAAAACTTATCCAATAATATAGAGTACTTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATATTAGAGATAAAACTTATCCAATAATATAGAGTACTTATAAA  100

seq1  ACTAAATTAAACTGAAACATTTCTATTCACCTACAAATGCTATACAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTAAACTGAAACATTTCTATTCACCTACAAATGCTATACAACAG  150

seq1  TTCTAATAATTGAGTCTTTCCACTTCATCTTGACTCAATGCCTTTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAATTGAGTCTTTCCACTTCATCTTGACTCAATGCCTTTGTTTC  200

seq1  ATGAGGCAGCAAATCTGCTGACAATTCCCATTGATCCACAGATCAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCAGCAAATCTGCTGACAATTCCCATTGATCCACAGATCAGTGGA  250

seq1  AACAAAGATTTTTTTCATTTGAGGAATTCATTCCAGGGCAATAAACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATTTTTTTCATTTGAGGAATTCATTCCAGGGCAATAAACCACA  300

seq1  AATTGCTCCTAACTTGAGATTACTGGAATATTTCCATATTCATATATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCCTAACTTGAGATTACTGGAATATTTCCATATTCATATATACC  350

seq1  ATGTGTATACAAATACACACACAAACATATAAATGTGTATGTATGTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATACAAATACACACACAAACATATAAATGTGTATGTATGTATGT  400

seq1  ATACATTGTGGATGGGTCTGGTGCTGTTTGTATGTTGATGCTAATTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGTGGATGGGTCTGGTGCTGTTTGTATGTTGATGCTAATTCTGC  450

seq1  TCTCCTGGGTGGGGTTGCAGGCATGGAGTGACTTCTTGTGAGCCAATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGGTGGGGTTGCAGGCATGGAGTGACTTCTTGTGAGCCAATCCC  500

seq1  CTAATGAATAAAGGATCCAATCACTGGGCAAGAAGGTGGGATTTCCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAATAAAGGATCCAATCACTGGGCAAGAAGGTGGGATTTCCATCT  550

seq1  TGGAGAGGGGAAGAGAGGAAGCAGGAGAGATTAAGGTCCTTTTGGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGGGAAGAGAGGAAGCAGGAGAGATTAAGGTCCTTTTGGACAGG  600

seq1  GATAGTCTAAAGACAAGATGTAATTACTAGTGCCTCCTGGTTTCAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTAAAGACAAGATGTAATTACTAGTGCCTCCTGGTTTCAATGGC  650

seq1  ACATCCATCAGGATTTGCCACCAAAGGATTTAGATTTTCATAAGGCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATCAGGATTTGCCACCAAAGGATTTAGATTTTCATAAGGCTTAC  700

seq1  AAGATTAGGACTTTAGTTTTTGCAACGATAGATTGAGTTACCACTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAGGACTTTAGTTTTTGCAACGATAGATTGAGTTACCACTGTTTC  750

seq1  TGAACTAACTCTATGTGGCATTTTTCCTTCCTGCAGTGGTTCAAGAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACTCTATGTGGCATTTTTCCTTCCTGCAGTGGTTCAAGAGAGA  800

seq1  AAGGTACAGCAAAAAAAGTGTAGG  824
      ||||||||||||||||||||||||
seq2  AAGGTACAGCAAAAAAAGTGTAGG  824