BAC Information

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BAC

Clone NameB6Ng01-146O14
Chromosome5 (Build37)13 (Build37)
Map Location 123,186,205 - 123,187,37694,485,763 - 94,486,337
singlet/doubletsingletsinglet
Overlap geneCamkk2
Upstream geneAtxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4
Downstream geneAnapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O14.bB6Ng01-146O14.g
ACCDH943933DH943934
length1,153436
definitionDH943933|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O14, 5' end.DH943934|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,186,205 - 123,187,376)(94,485,763 - 94,486,337)
sequence
gaattctaggaacctgcctgccaccacctacctgggacctcacgctccct
cacctggcattttacataggttctggggcattgagctcaagtcctcaatc
atttaacaaatgatctccctggtccccattaagctagttttaacaatgga
agtggctgagaggagttcccgatacagtctggcaatattatcaaggagga
cactgggatatctaccctaatccaggctctcaggggagtggggttaccac
ccaacattacagaggcaaaaacattcatctgctccagaagttgtaggtta
catgggcctagacatgcaggcaggcaggagatggcccagatcctgctaag
ataacttctagcttttaacccactagagtttcagaagaaccctcgtgagg
agccccagagtacagcaggcctgacctatgctctgtgtgtgcgtacttag
gtcacggcccccagagcaacaccagactcccatcgccattgacatgcatg
ggcaatgcagctatccatccagtgggcctgaagaacctgggtaagttcgc
aggcattccgggtggagcgccatgcaccgcagcccagcccgcatgcacga
cacgccgtgggacccaagcccctggatgcccctcgctggaaacccagagg
ccctcagtgagccaggcacagcagccccggctgaaggcacgtcttgcctg
ctggagatgcccacgtgcttgctctgcagctgaccgcccccaggccccag
cggaggggaggcaatggcacaggcaggcagacaggcgtttaccttgggct
cagacaagggctcccactccctggttggttttttgctggaattgccagag
ggagggaaaggggacatgagaagggaccctggggatgtcccccagaaggc
tagacagcagaccctttgcatctccagacagcctgtactgagtggtcgtt
tgaggtgacggacataaaacggtgtgtttacatagaagggcccagagtga
aaccatcccgtgtttctgtggcactgagtgctacaccagagacgccccag
tgaagagtaggtcctcagaggaggtgactcaggtggtacactgtcctgat
gaatgctggctgaggtgaggtagccaaagccaagcccaggtggtctctcc
tgg
cataacgttattaattcatctaaaactgttatttttatgaaagttcattg
tcatgttgatctgtaggaaaattgcccaatagagcaggctctcacccagg
aagtaatcacaccaggctatgggcagtgagctctccccatgatcatcaca
ccaggccagatatatgaggactgtagctgtgacaaacatgagaagagaag
gcacagcagcagcaagaagtcctggggcaaagcgcctggggctgtgtctc
tccaacgtacacccatcacagctgagcaaaacgcaggccatctccaggaa
gctcacttgcccactgcagctgctcctgcatggtctctgccaatgtggtg
tgtgtgtgtgtgtgtgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtgtg
tgtgcgagtgtgtgtgcgcgtgtgtgtgaatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123186205_123187376
seq2: B6Ng01-146O14.b_47_1199

seq1  GAATTCTAGGAACCTGCCTGCCACCACCTACCTGGGACCTCACGCTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAACCTGCCTGCCACCACCTACCTGGGACCTCACGCTCCCT  50

seq1  CACCTGGCATTTTACATAGGTTCTGGGGCATTGAGCTCAAGTCCTCAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCATTTTACATAGGTTCTGGGGCATTGAGCTCAAGTCCTCAATC  100

seq1  ATTTAACAAATGATCTCCCTGGTCCCCATTAAGCTAGTTTTAACAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAAATGATCTCCCTGGTCCCCATTAAGCTAGTTTTAACAATGGA  150

seq1  AGTGGCTGAGAGGAGTTCCCGATACAGTCTGGCAATATTATCAAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGAGAGGAGTTCCCGATACAGTCTGGCAATATTATCAAGGAGGA  200

seq1  CACTGGGATATCTACCCTAATCCAGGCTCTCAGGGGAGTGGGGTTACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATATCTACCCTAATCCAGGCTCTCAGGGGAGTGGGGTTACCAC  250

seq1  CCAACATTACAGAGGCAAAAACATTCATCTGCTCCAGAAGTTGTAGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTACAGAGGCAAAAACATTCATCTGCTCCAGAAGTTGTAGGTTA  300

seq1  CATGGGCCTAGACATGCAGGCAGGCAGGAGATGGCCCAGATCCTGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCTAGACATGCAGGCAGGCAGGAGATGGCCCAGATCCTGCTAAG  350

seq1  ATAACTTCTAGCTTTTAACCCACTAGAGTTTCAGAAGAACCCTCGTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCTAGCTTTTAACCCACTAGAGTTTCAGAAGAACCCTCGTGAGG  400

seq1  AGCCCCAGAGTACAGCAGGCCTGACCTATGCTCTGTGTGTGCGTACTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGAGTACAGCAGGCCTGACCTATGCTCTGTGTGTGCGTACTTAG  450

seq1  GTCACGGCCCCCAGAGCAACACCAGACTCCCATCGCCATTGACATGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGCCCCCAGAGCAACACCAGACTCCCATCGCCATTGACATGCATG  500

seq1  GGCAATGCAGCTATCCATCCAGTGGGCCTGAAGAACCTGGGTAAGTTCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCAGCTATCCATCCAGTGGGCCTGAAGAACCTGGGTAAGTTCGC  550

seq1  AGGCATTCCGGGTGGAGCGCCATGCACCGCAGCCCAGCCCGCATGCACGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCCGGGTGGAGCGCCATGCACCGCAGCCCAGCCCGCATGCACGA  600

seq1  CACGCCGTGGGACCCAAGCCCCTGGATGCCCCTCGCTGGAAACCCAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCGTGGGACCCAAGCCCCTGGATGCCCCTCGCTGGAAACCCAGAGG  650

seq1  CCCTCAGTGAGCCAGGCACAGCAGCCCCGGCTGAAGGCACGTCTTGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTGAGCCAGGCACAGCAGCCCCGGCTGAAGGCACGTCTTGCCTG  700

seq1  CTGGAGATGCCCACGTGCTTGCTCTGCAGCTGACCGCCCCCAGGCCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATGCCCACGTGCTTGCTCTGCAGCTGACCGCCCCCAGGCCCCAG  750

seq1  CGGAGGGGAGGCAATGGCACAGGCAGGCAGACAGGCGTTTACCTTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGGAGGCAATGGCACAGGCAGGCAGACAGGCGTTTACCTTGGGCT  800

seq1  CAGACAAGGGCTCCCACTCCCTGGTTGGTTTTTTGCTGGAATTGCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGGCTCCCACTCCCTGGTTGGTTTTTTGCTGGAATTGCCAGAG  850

seq1  GGAGGGAAAGGGGACATGAGAAGGGACCCTGGGGATGTCCCCCAGAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAAGGGGACATGAGAAGGGACCCTGGGGATGTCCCCCAGAAGGC  900

seq1  TAGACAGCAGACCC-TTGCATCTTCCAGACAGCCTGTACTGAGGTGGTCG  949
      |||||||||||||| ||||||| ||||||||||||||||||| |||||||
seq2  TAGACAGCAGACCCTTTGCATC-TCCAGACAGCCTGTACTGA-GTGGTCG  948

seq1  TTTTGAGGTGAACGGACATAAAACGGTGTGTTTACATAGAAAGGGCCCAG  999
       ||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  -TTTGAGGTG-ACGGACATAAAACGGTGTGTTTACATAG-AAGGGCCCAG  995

seq1  AGTGAAACCATCCCGTGTTTCTGTGGCCACTGAGTGCTACAACCCAGAGA  1049
      |||||||||||||||||||||||||| ||||||||||||||  |||||||
seq2  AGTGAAACCATCCCGTGTTTCTGTGG-CACTGAGTGCTACA--CCAGAGA  1042

seq1  CGCCCCAGTGAAAGAGTAAGTCCTCAGAGGAAGGTGGAACTTCAGGGTGG  1099
      |||||||||| ||||||| ||||||||||| |||||  || ||| |||||
seq2  CGCCCCAGTG-AAGAGTAGGTCCTCAGAGG-AGGTG--AC-TCA-GGTGG  1086

seq1  GTAACACTGTCCATAGATGGATGCTGGCTGAGGTGAGGAAGGCACAATAG  1149
         |||||||||   |||| |||||||||||||||||| ||   | | ||
seq2  --TACACTGTCC--TGATGAATGCTGGCTGAGGTGAGGTAG---CCAAAG  1129

seq1  CAAAG-CCAGTGTGTCTCTCCTGG  1172
      | ||| ||||   |||||||||||
seq2  CCAAGCCCAGGTGGTCTCTCCTGG  1153

seq1: chr13_94485763_94486337
seq2: B6Ng01-146O14.g_418_511 (reverse)

seq1  CACACACTCACACATACACACACTCACACATAACCACACACACACACACA  50
      |||||| ||||||| || | ||| |||||     ||||||||||||||||
seq2  CACACATTCACACACACGCGCACACACACTCGCACACACACACACACACA  50

seq1  CACACACACACACACTCACATATAACCACACATACACACTCACACATAAC  100
      ||||||||||| |||||||| | |  |||||| ||||||   |||||   
seq2  CACACACACACTCACTCACACACACACACACACACACAC---CACAT---  94

seq1  CACACACACACACTCACACACACTATAGACTATCACACACTGTCACAACC  150
                                                        
seq2  --------------------------------------------------  94

seq1  TCACAGTGCACACACACACACACTCATACATTGTCACACCCACAGTGTGT  200
                                                        
seq2  --------------------------------------------------  94

seq1  CTCATACACACTCATACATATACACTCACACATACACACAGTGTCACACA  250
                                                        
seq2  --------------------------------------------------  94

seq1  TACCAGATACACTGTCACACCCTCACAGTATATCTCACACACAATCACAC  300
                                                        
seq2  --------------------------------------------------  94

seq1  ACATATACATACACACACATTTACACATACTGCATACTGTCATACACTGT  350
                                                        
seq2  --------------------------------------------------  94

seq1  CACACCCTCACAGTGCATTTTATACACATTCGTACATAACCACACTCACA  400
                                                        
seq2  --------------------------------------------------  94

seq1  CACACGCACAACTACACAGTCACACCCTCACTGTACATGCTCACACATAC  450
                                                        
seq2  --------------------------------------------------  94

seq1  TCACACACACACACATACACATACACACACACACACACACTCACACATAA  500
                                                        
seq2  --------------------------------------------------  94

seq1  CCCCACATAGTCATACCCTCATAGTGCATCCTCTCTCTCTCTCTTTCACA  550
                                                        
seq2  --------------------------------------------------  94

seq1  CACACACACACACACACACACACAT  575
                               
seq2  -------------------------  94