BAC Information

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BAC

Clone NameB6Ng01-148C05
Chromosome13 (Build37)
Map Location 5,843,179 - 5,969,808
singlet/doubletdoublet
Overlap gene1700016G22Rik, Klf6
Upstream genenone
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148C05.bB6Ng01-148C05.g
ACCDH944828DH944829
length1,0611,127
definitionDH944828|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C05, 5' end.DH944829|Mus musculus domesticus DNA, BAC clone: B6Ng01-148C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,968,750 - 5,969,808)(5,843,179 - 5,844,319)
sequence
gaattccaaaaaatgttggctaagagatttatcagttgcattaaaataat
ttcaaaatattttagttatgaatatataatgagtttattatttaagtggg
tggtaagacatctagagttatttccataacaagtaagaattatggcagca
aaataattttttgttgttctagctcctagtattggctacttaattggcaa
gtaactaggatttttaacagatccacaaacatcaaacactatttttaaaa
caaatgaagctgtatagattaatatttccaacaatatatgactagatatt
gatattagaaaatatgctgttttataaaggagttttaggaaaattaaatg
tttccccttgatgtacaatattgtgatctcccctctttctgaataaatgc
aacattttcctcaataaatctttcttaattctcagagaacatcaactgcc
cttttaatgctgtctccctccactccttttacagcatcaggaccataatt
ccctctgcaccctgtgactgtattttgtttacatgtattcatcatcactt
agagagggatttaagagggcaaaggctgcatctgttaccttaggatgtct
agctcttaaatttacactcacagtttaaagccagtatttatgggagaaat
gcacactgagacactatgggcagtgaggaattccttgcaggcagtaactt
gaggaaagccaattggaattcaatttttttgacatctttctgttaatact
aagtggggaatggatggtgactgtattggaggacctgaagtggcttgttg
agcacctcattttgccatgtggttaggatagtactgagcaaacaggactc
tggtaaaaatttatatactgacaaaacaggattagtttcctggatgttct
aacatagttttgtcccctttatattacttttctaaattcattgttgcaca
aatcatttcaaatcttagttcactcctataaaacacatacacacatgcag
caacattcacactcaaagaacagacaaaaaatgctcatacttcttggatg
gcccccccccc

gaattccttatcagttaacaattgatgtatggtaaaggtcaattctctga
atgcaaaaccctgaccaccaaggagggagcctgaagggctaggacgaagt
ggagataagtacaggattgaaccggttctgttggaggcaaagcaggaaat
gagtagcctggttgaagctctgcctgtaaactcttggtaaatggaagtaa
tccatggtagtcttagcatttcttccattcttcatgggactgcttctgtc
tgctgatgagggaccacaccatttaaatggactgaaatcaaactatttct
ctatccccaaatagtagctttgagactgggaataatctgtgtctgtggcc
atggacagaagatgggccacctttttagaaagagttttttttccccaata
tgagcatcaccctcccctaggagaatgtgggactaatccaagggtgttgg
aagttacatagcaactaattcttcaacggtgtttatgaaacggaagccta
gcaactcatggaggagtcagatccacaggatctcagtccatgaggcttac
agttacagttgtaactgattcagaggtggtcacatgttgctcacccagaa
agtaaccccggggctgcaagtaacaggaaaacagccatgcccattttatt
catattttataacctacagtaaacatttacttagcaattccaccctgtct
atcaccgccttagacacttatgcagaacttagagtcatactgaatgccaa
tatgatgttaattattgcaaccaaaagaggcctgtatcgttagactctga
tgaatttttaagatacactggaggggaaattgagtcataatataattctc
tatgagggtttgaaagtgtgatccttagatccttctgctctgtgtgacaa
gcaatacgattttaagctcagacaaagtgggtgtcttttggttagggttc
tcttttcaccaggaaatcccctcttctaatagaattctttttgttttgct
ttaatctaatctagggaattgtcccatccctgtgagtcatcagaatggct
tcctcacagtagacctaaaaatctgaaatgcttccctgatactggagaaa
cgtatccagtcaatgagaaagacttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5968750_5969808
seq2: B6Ng01-148C05.b_44_1093 (reverse)

seq1  CATCCATGGAAGTATGAGCATGTTTTTGTCTGTGTCTTTGAGTGTGAATG  50
      ||||||  ||||||||||||| ||||||||||| ||||||||||||||||
seq2  CATCCA-AGAAGTATGAGCAT-TTTTTGTCTGT-TCTTTGAGTGTGAATG  47

seq1  TTTGCTTGCATGTGTGTATGTGTTTTATAGGAGTTGAACTAAGATTTGAA  100
       |||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  -TTGC-TGCATGTGTGTATGTGTTTTATAGGAG-TGAACTAAGATTTGAA  94

seq1  ATGATTTGTGCAACAAATGAATTTAGAAAAGTAATATAAAGGGGGACAAA  150
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  ATGATTTGTGCAAC-AATGAATTTAGAAAAGTAATATAAA-GGGGACAAA  142

seq1  ACTATGTTTAGAACATCCAGGAAACTAATCCTGTTTTGTCAGTATATAAA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATG-TTAGAACATCCAGGAAACTAATCCTGTTTTGTCAGTATATAAA  191

seq1  TTTTTACCAGAGTCCTGTTTGCTCAGTACTATCCTAACCACATGGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCAGAGTCCTGTTTGCTCAGTACTATCCTAACCACATGGCAAAA  241

seq1  TGAGGTGCTCAACAAGCCACTTCAGGTCCTCCAATACAGTCACCATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCTCAACAAGCCACTTCAGGTCCTCCAATACAGTCACCATCCAT  291

seq1  TCCCCACTTAGTATTAACAGAAAGATGTCAAAAAAATTGAATTCCAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTTAGTATTAACAGAAAGATGTCAAAAAAATTGAATTCCAATTG  341

seq1  GCTTTCCTCAAGTTACTGCCTGCAAGGAATTCCTCACTGCCCATAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCAAGTTACTGCCTGCAAGGAATTCCTCACTGCCCATAGTGTC  391

seq1  TCAGTGTGCATTTCTCCCATAAATACTGGCTTTAAACTGTGAGTGTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCATTTCTCCCATAAATACTGGCTTTAAACTGTGAGTGTAAAT  441

seq1  TTAAGAGCTAGACATCCTAAGGTAACAGATGCAGCCTTTGCCCTCTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCTAGACATCCTAAGGTAACAGATGCAGCCTTTGCCCTCTTAAA  491

seq1  TCCCTCTCTAAGTGATGATGAATACATGTAAACAAAATACAGTCACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTAAGTGATGATGAATACATGTAAACAAAATACAGTCACAGGG  541

seq1  TGCAGAGGGAATTATGGTCCTGATGCTGTAAAAGGAGTGGAGGGAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGGAATTATGGTCCTGATGCTGTAAAAGGAGTGGAGGGAGACAG  591

seq1  CATTAAAAGGGCAGTTGATGTTCTCTGAGAATTAAGAAAGATTTATTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGGGCAGTTGATGTTCTCTGAGAATTAAGAAAGATTTATTGAG  641

seq1  GAAAATGTTGCATTTATTCAGAAAGAGGGGAGATCACAATATTGTACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTGCATTTATTCAGAAAGAGGGGAGATCACAATATTGTACATC  691

seq1  AAGGGGAAACATTTAATTTTCCTAAAACTCCTTTATAAAACAGCATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAACATTTAATTTTCCTAAAACTCCTTTATAAAACAGCATATTT  741

seq1  TCTAATATCAATATCTAGTCATATATTGTTGGAAATATTAATCTATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATCAATATCTAGTCATATATTGTTGGAAATATTAATCTATACAG  791

seq1  CTTCATTTGTTTTAAAAATAGTGTTTGATGTTTGTGGATCTGTTAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTGTTTTAAAAATAGTGTTTGATGTTTGTGGATCTGTTAAAAAT  841

seq1  CCTAGTTACTTGCCAATTAAGTAGCCAATACTAGGAGCTAGAACAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTACTTGCCAATTAAGTAGCCAATACTAGGAGCTAGAACAACAAA  891

seq1  AAATTATTTTGCTGCCATAATTCTTACTTGTTATGGAAATAACTCTAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTGCTGCCATAATTCTTACTTGTTATGGAAATAACTCTAGAT  941

seq1  GTCTTACCACCCACTTAAATAATAAACTCATTATATATTCATAACTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCACCCACTTAAATAATAAACTCATTATATATTCATAACTAAAA  991

seq1  TATTTTGAAATTATTTTAATGCAACTGATAAATCTCTTAGCCAACATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAATTATTTTAATGCAACTGATAAATCTCTTAGCCAACATTTT  1041

seq1  TTGGAATTC  1059
      |||||||||
seq2  TTGGAATTC  1050


seq1: chr13_5843179_5844319
seq2: B6Ng01-148C05.g_67_1193

seq1  GAATTCCTTATCAGTTAACAATTGATGTATGGTAAAGGTCAATTCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCAGTTAACAATTGATGTATGGTAAAGGTCAATTCTCTGA  50

seq1  ATGCAAAACCCTGACCACCAAGGAGGGAGCCTGAAGGGCTAGGACGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAACCCTGACCACCAAGGAGGGAGCCTGAAGGGCTAGGACGAAGT  100

seq1  GGAGATAAGTACAGGATTGAACCGGTTCTGTTGGAGGCAAAGCAGGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAGTACAGGATTGAACCGGTTCTGTTGGAGGCAAAGCAGGAAAT  150

seq1  GAGTAGCCTGGTTGAAGCTCTGCCTGTAAACTCTTGGTAAATGGAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCCTGGTTGAAGCTCTGCCTGTAAACTCTTGGTAAATGGAAGTAA  200

seq1  TCCATGGTAGTCTTAGCATTTCTTCCATTCTTCATGGGACTGCTTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTAGTCTTAGCATTTCTTCCATTCTTCATGGGACTGCTTCTGTC  250

seq1  TGCTGATGAGGGACCACACCATTTAAATGGACTGAAATCAAACTATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGAGGGACCACACCATTTAAATGGACTGAAATCAAACTATTTCT  300

seq1  CTATCCCCAAATAGTAGCTTTGAGACTGGGAATAATCTGTGTCTGTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCAAATAGTAGCTTTGAGACTGGGAATAATCTGTGTCTGTGGCC  350

seq1  ATGGACAGAAGATGGGCCACCTTTTTAGAAAGAGTTTTTTTTCCCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGAAGATGGGCCACCTTTTTAGAAAGAGTTTTTTTTCCCCAATA  400

seq1  TGAGCATCACCCTCCCCTAGGAGAATGTGGGACTAATCCAAGGGTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCACCCTCCCCTAGGAGAATGTGGGACTAATCCAAGGGTGTTGG  450

seq1  AAGTTACATAGCAACTAATTCTTCAACGGTGTTTATGAAACGGAAGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATAGCAACTAATTCTTCAACGGTGTTTATGAAACGGAAGCCTA  500

seq1  GCAACTCATGGAGGAGTCAGATCCACAGGATCTCAGTCCATGAGGCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCATGGAGGAGTCAGATCCACAGGATCTCAGTCCATGAGGCTTAC  550

seq1  AGTTACAGTTGTAACTGATTCAGAGGTGGTCACATGTTGCTCACCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGTTGTAACTGATTCAGAGGTGGTCACATGTTGCTCACCCAGAA  600

seq1  AGTAACCCCGGGGCTGCAAGTAACAGGAAAACAGCCATGCCCATTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCCGGGGCTGCAAGTAACAGGAAAACAGCCATGCCCATTTTATT  650

seq1  CATATTTTATAACCTACAGTAAACATTTACTTAGCAATTCCACCCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATAACCTACAGTAAACATTTACTTAGCAATTCCACCCTGTCT  700

seq1  ATCACCGCCTTAGACACTTATGCAGAACTTAGAGTCATACTGAATGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCGCCTTAGACACTTATGCAGAACTTAGAGTCATACTGAATGCCAA  750

seq1  TATGATGTTAATTATTGCAACCAAAAGAGGCCTGTATCGTTAGACTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTTAATTATTGCAACCAAAAGAGGCCTGTATCGTTAGACTCTGA  800

seq1  TGAATTTTTAAGATACACTGGAGGGGAAATTGAGTCATAATATAATTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTAAGATACACTGGAGGGGAAATTGAGTCATAATATAATTCTC  850

seq1  TATGAGGGTTTGAAAGTGTGATCCTTAAGATCCTTCTGCTCTGTGTGACA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGAGGGTTTGAAAGTGTGATCCTT-AGATCCTTCTGCTCTGTGTGACA  899

seq1  AGCAATACGATTTTTAAGCTCAGACAAAAGTGGGTGTCTTTTGGTTTAGG  950
      |||||||||| |||||||||||||| |||||||||||||||||| |||||
seq2  AGCAATACGA-TTTTAAGCTCAGAC-AAAGTGGGTGTCTTTTGG-TTAGG  946

seq1  GTTCTCTTTTCACCAGGAAATCCCCTCTTCTAATAGGATTCTTTTTGTTT  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTCTCTTTTCACCAGGAAATCCCCTCTTCTAATAGAATTCTTTTTGTTT  996

seq1  TGCTTTAATCCTTAATCTAGGGGGAATGTCCCATCCCTGTGAGTCATCAG  1050
      ||||||||||  ||||||| ||| | ||||||||||||||||||||||||
seq2  TGCTTTAATC--TAATCTA-GGGAATTGTCCCATCCCTGTGAGTCATCAG  1043

seq1  AATGGCTT-CTCACAGGTAAGACCTAGAAAATTCCTGAAATGCTTCCCCT  1099
      |||||||| |||||||   ||||||| |||||  ||||||||||| ||||
seq2  AATGGCTTCCTCACAG--TAGACCTA-AAAAT--CTGAAATGCTT-CCCT  1087

seq1  GATACT-GAGAAACGTACTCAAGTCAATTGAGAAAGACATTAA  1141
      |||||| |||||||||| || |||||| |||||||||| ||||
seq2  GATACTGGAGAAACGTA-TCCAGTCAA-TGAGAAAGAC-TTAA  1127


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