BAC Information

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BAC

Clone NameB6Ng01-148N07
Chromosome13 (Build37)
Map Location 23,619,112 - 23,620,230
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
Downstream geneHist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148N07.bB6Ng01-148N07.g
ACCDH945331DH945332
length1,1171,082
definitionDH945331|Mus musculus domesticus DNA, BAC clone: B6Ng01-148N07, 5' end.DH945332|Mus musculus domesticus DNA, BAC clone: B6Ng01-148N07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaatcatctaccaggtgagctttgttctcacagacacattct
ttagttctgcaactttggaatgtaacaggccctgagaccttagcacagct
gactccctaattgaatgccattcaggctgtatgtagtaggtggcactacc
tgccaaaactaaaacaaaaactcaattcatcaaagtccatagttctggga
gagtccctagaagtaccacccttgttttctggcttcggtgttctgcttct
ggctaactgttcttgataactgaagtatgtcaacctgggctatgattttt
gtgcttaaaggctcaaccctgagaaaggctcagtgctacaccgtgatctg
gaacacacagtgtagtcagtcattggtcagctaagaaagattttctattg
gctaaaacccatgtccgagaagtcttctctgatgagcaccccacaacaga
atgatgttctcattcttcctggaattggagatttcttgaaaagcagcttg
gatgctcagatgacctgtgtggcttccccaccatgggacatggtggcaca
gctggtgagaattgttgattgacttttatttctgctgttgcaaaaaaaca
aaaacaacaaaacaaaacaaaaccaactgttaactaaatggacttcgcag
gttgcatttatgtacatgcatatatttgtaattatttttattttatatat
ttgtattattatcaatagaggtcatggatttcatagggattgagaaaggt
gtgtacaggaagagttagagggcgaggagggaggaggaaaagatataatt
acatttaaaaaaaaaagaacagcaaaacgagcaaacagccatccccatag
ttcttgttgagtgggatggaggaacatttgggcggctgaagtgtgtgtgt
gtgtgtttaagatgtcagctaagtctgtgtatgaaatatttatgtagaga
tgacttttaagatggtcactctttgctaagtttatatagatagctccaac
atgcacattgaacattcccatagagcctacattaggtatcttgtgttcta
cgtttgggtgacatttcatccaaatgaagatatgtctgtcatgccacccc
tttctcttttcggacct
gaattcttggactttctatcaggagacagctgtggctagaccacagcctg
taaaccactctaataaaccccattttatattccattctgatcttctaaag
aaccttctaaatcaaagtccatggagtttaagcaagaagaatgacagggg
caaaatttcaaagggttgctgagtgcagcaggaaacacaggccagaacta
tgcccagcagcctggagtgcttctgaaatggaaacataagggttctttgg
aaagtcagttgggtggtgtaaacacatgaaggagtggtttttttgaagtg
gacatgggtgaaagactaaagtagtctcatgaaggaatgtttagctaaag
cagacaccggagaaaggatgttttgttaaaataagaatgtgaaaggacat
gtgatgaaggatgtttttgttaacaatatgtatgtattggtctgtcttat
actgtatagttgagttatatttgttgggactctatagagagaaacgtacc
aaaaaacttttggtggtgtgttatatatactgttttgttgtttttgtggg
cttgagctgattggcagagtgatgtcagttgagacagatgtatgtgttga
gggaagacccatggaggacatgtgatgtttgaagggtataaataggactc
attggacagtgacagaggctgacgtgggcctgtttatagagctagctgta
cagagcttgtgggtcttggatcttcactgatcttcactttgctgaatgag
acacagctcagaacttctcctgggattcctcctggtccctcctgcaggct
ggggcctggatcttcctattaggttgtgccgctgaagtgtttgggagtga
attgagctgccactgctaatctgtaaactgacctgtcatttccagacaac
acagacagaaattactccaaggaaactttctaacaggtccactatctgca
tctttcttttcactaccctggtgggtagtgagttaaaaggagtttaagca
tttagacatcgtctgcatctttatagcctcagtacagggacccagggcca
agaagtggggatgatggtgagtgtgagtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23619112_23620230
seq2: B6Ng01-148N07.b_47_1163

seq1  GAATTCCACAATCATCTACCAGGTGAGCTTTGTTCTCACAGACACATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATCATCTACCAGGTGAGCTTTGTTCTCACAGACACATTCT  50

seq1  TTAGTTCTGCAACTTTGGAATGTAACAGGCCCTGAGACCTTAGCACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTGCAACTTTGGAATGTAACAGGCCCTGAGACCTTAGCACAGCT  100

seq1  GACTCCCTAATTGAATGCCATTCAGGCTGTATGTAGTAGGTGGCACTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTAATTGAATGCCATTCAGGCTGTATGTAGTAGGTGGCACTACC  150

seq1  TGCCAAAACTAAAACAAAAACTCAATTCATCAAAGTCCATAGTTCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAACTAAAACAAAAACTCAATTCATCAAAGTCCATAGTTCTGGGA  200

seq1  GAGTCCCTAGAAGTACCACCCTTGTTTTCTGGCTTCGGTGTTCTGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTAGAAGTACCACCCTTGTTTTCTGGCTTCGGTGTTCTGCTTCT  250

seq1  GGCTAACTGTTCTTGATAACTGAAGTATGTCAACCTGGGCTATGATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTGTTCTTGATAACTGAAGTATGTCAACCTGGGCTATGATTTTT  300

seq1  GTGCTTAAAGGCTCAACCCTGAGAAAGGCTCAGTGCTACACCGTGATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAAGGCTCAACCCTGAGAAAGGCTCAGTGCTACACCGTGATCTG  350

seq1  GAACACACAGTGTAGTCAGTCATTGGTCAGCTAAGAAAGATTTTCTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACAGTGTAGTCAGTCATTGGTCAGCTAAGAAAGATTTTCTATTG  400

seq1  GCTAAAACCCATGTCCGAGAAGTCTTCTCTGATGAGCACCCCACAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACCCATGTCCGAGAAGTCTTCTCTGATGAGCACCCCACAACAGA  450

seq1  ATGATGTTCTCATTCTTCCTGGAATTGGAGATTTCTTGAAAAGCAGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTCTCATTCTTCCTGGAATTGGAGATTTCTTGAAAAGCAGCTTG  500

seq1  GATGCTCAGATGACCTGTGTGGCTTCCCCACCATGGGACATGGTGGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAGATGACCTGTGTGGCTTCCCCACCATGGGACATGGTGGCACA  550

seq1  GCTGGTGAGAATTGTTGATTGACTTTTATTTCTGCTGTTGCAAAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGAATTGTTGATTGACTTTTATTTCTGCTGTTGCAAAAAAACA  600

seq1  AAAACAACAAAACAAAACAAAACCAACTGTTAACTAAATGGACTTCGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAAAACAAAACAAAACCAACTGTTAACTAAATGGACTTCGCAG  650

seq1  GTTGCATTTATGTACATGCATATATTTGTAATTATTTTTATTTTATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTTATGTACATGCATATATTTGTAATTATTTTTATTTTATATAT  700

seq1  TTGTATTATTATCAATAGAGGTCATGGATTTCATAGGGATTGAG-AAGGT  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGTATTATTATCAATAGAGGTCATGGATTTCATAGGGATTGAGAAAGGT  750

seq1  GTGTACAGGAAGAGTTAGAGGGCGAGGAGGGAGGAGGAAAAGATATAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAGGAAGAGTTAGAGGGCGAGGAGGGAGGAGGAAAAGATATAATT  800

seq1  ACATTTAAAAAAAAAAGAACAGCAAAACGAGCAAACAGCCATCCCCATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAAAAAAAAGAACAGCAAAACGAGCAAACAGCCATCCCCATAG  850

seq1  TTCTTGTTGAGTGGGATGGAGGAACATTTGGGCGGCTGAAGTGTGTGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTGAGTGGGATGGAGGAACATTTGGGCGGCTGAAGTGTGTGTGT  900

seq1  GTGTGTTTAAGATGTTCAGCTAAGTCTGTGTATGAAATATTTATGTAGAG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTAAGATG-TCAGCTAAGTCTGTGTATGAAATATTTATGTAGAG  949

seq1  ATGACATTTTAAGATGGTCACTC-TTGCATAGTTTAATATAGATAGCTCC  998
      ||||| ||||||||||||||||| ||||  ||||| ||||||||||||||
seq2  ATGAC-TTTTAAGATGGTCACTCTTTGCTAAGTTT-ATATAGATAGCTCC  997

seq1  AAACATGCACATTGAAACAATCCCATAGAGCCTACATTAGGTATCTTGTG  1048
       ||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  -AACATGCACATTG-AACATTCCCATAGAGCCTACATTAGGTATCTTGTG  1045

seq1  TTCTACCGTTTGGTGACATTTCCATCAGATGAAGAGATGGTCTG-CATGC  1097
      ||||||  || |||||||||||   || ||||||| || ||||| |||||
seq2  TTCTACGTTTGGGTGACATTTCATCCAAATGAAGATAT-GTCTGTCATGC  1094

seq1  AACCCC-TTCTCTTTTCGGAGCT  1119
       ||||| ||||||||||||| ||
seq2  CACCCCTTTCTCTTTTCGGACCT  1117