BAC Information

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BAC

Clone NameB6Ng01-149A03
Chromosome13 (Build37)8 (Build37)
Map Location 7,941,581 - 7,942,0965,922,619 - 5,923,819
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A03.bB6Ng01-149A03.g
ACCDH945463DH945464
length9871,177
definitionDH945463|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A03, 5' end.DH945464|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,941,581 - 7,942,096)(5,922,619 - 5,923,819)
sequence
gaattctcaattgaggaatactgaagggctgagaagcacttgaaaaaatg
ttcaacatccttaattatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcacaccagtgaatggctaggatcaaaaattcaggtgacagcag
atgctggcgaggatgtggagaaagaggaacactcctccattgttggtggg
attgcaagcttgtaaaaccactctggaaatcagtctggcagttcctcaga
aagctggacatagtactaccagcagatccagcaatacctctccagggcat
atacccagaagatgttccaactattaatatcagccctatttataatagcc
agaagctggaaagaatccagatgcccctcaacagaggaatggatacagaa
aatgtggtacatttacacaatggaatacaactcagctattaaaaacaatg
aatttatgaaactcttgggcaaatggatgtatctggacaatatcatcctt
agtgaggtaaccaatcacaaatgaagtcatttgatatgcactcactgata
agtggacatttgttgcagactatccccgttttggggtctcctatgggcat
ggaatgggtctctggttgcaggtggccaaggagtaggtgggaattgacag
acagactcaacacaagggagtgtggatctgaatataatttgtcaaatcga
gcatcaaactttttatacagaagaaaataggaaagttgggtgacacctgc
aaggtacaaagaggttactggattcttacacaaaacagaggaatgtaaac
acggaaggactggcaggaccaactgagataaatttgatgttaacaactgg
gatcaaaaacagttccacctaaggtccacttaatattagaagccaggggc
aagggcttcgtgcccttgccatagttcctgttctagtctattgtatagtc
caccttccccctaggccattgtaaatactgtgtatgg

gaattccaacaaagacatgagaatagtataaaggtagtcaagaagcacaa
gtctggtaaataaagtatgaatacactgctttttgaaggacagatgtgta
ggtacaatcagaagggaattatggtaacatagctctcctgaagaaaaatt
tttgaagtgtctgaataggtgaagacttgaaatacacataaccctgaaca
caggaaggaaaaaaaactcacatgtgttcaaatatacacgcaaattaatt
gttttcttggagacactagaatgtagcatgtggaaaggagtaatctagcc
aattaaattatgttgcaagactgagtcagataatcttactgactgagtat
aaactatttatcacaggaatttgtttaccacttatacacttaatggtgct
attttgtggtgttcatgcagcattagaaagtggggcctgcctagtcctat
ctttagtctttactttctatcccttaagagatgatctttcttaccactga
ctcctgcagccatgatgttctgcccaagcacaggaggtcaagcaaccaga
cactaagtcctctgagaccataagctgaaataaatatttgttctttaact
tatcctgaagtattttagtcactgtcatataaaggtcattaatgtagata
atgagtgaggaaagctaactagtgccttttgtttatattgtaagaatgaa
cattgaatttgaaacaagaaacaagacttgcttagaaggagacaatacat
cctgcttatcttgtcagtaacaaatggctcagtattggcccagttaacta
ttactctaagctgatcatatatgaggaataaataaccaaagattttacaa
agaactgagagcaggagaaatagtgattcccaagaaagaacacaccaact
gggtatccaaaccaaatggttgtgatccatcctgaaactttcacaaacag
taacatatatgagcctagcatttgtttatgtatttaggaaagtagactat
agatccatgaatataaacgtgaccaaaggagttactgggagatgaataat
aataaccactagatgctttgtaaacaaaaaccttgccagatttagatgtt
gtggtacacccaaaggtaagtgattccaaggataatgctaaaatgtcatc
tgcagtacctgcccctctggtgctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_7941581_7942096
seq2: B6Ng01-149A03.b_112_598

seq1  AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAG  50
      |||||||||||||||||||||||||||||||||||| ||||||||||  |
seq2  AGGGAAATGCAAATCAAAACAACCCTGAGATTCCACTTCACACCAGT--G  48

seq1  AATGGCTAAAATCAAAAATTCAGATGACAGCAGATGCTGGTGAGGATGTG  100
      ||||||||  ||||||||||||| |||||||||||||||| |||||||||
seq2  AATGGCTAGGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTG  98

seq1  GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAAAA  148

seq1  CCACTGTAGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACT  200
      ||||| | |||||||||||||| ||||||||||||  |||||||||||||
seq2  CCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAGCTGGACATAGTACT  198

seq1  ACCAGAGGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTTC  250
      |||||  |||||  |||||||||||| ||||||||| |||||||||||||
seq2  ACCAGCAGATCCAGCAATACCTCTCCAGGGCATATACCCAGAAGATGTTC  248

seq1  CAACTGGTAAGAAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTT  300
      ||||                          | || ||| ||||| |||||
seq2  CAAC--------------------------TATTAATATCAGCCCTATTT  272

seq1  ATAATAGCTAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATG  350
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  ATAATAGCCAGAAGCTGGAAAGAATCCAGATGCCCCTCAACAGAGGAATG  322

seq1  GATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTA  400
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  GATACAGAAAATGTGGTACATTTACACAATGGAATACAACTCAGCTATTA  372

seq1  AAAAGAATGAAATTATGAAATTCCTAGGCAAATGAATGGACCTGGAGGGC  450
      |||| |||||| |||||||| || | |||||||| ||| | |||||    
seq2  AAAACAATGAATTTATGAAACTCTTGGGCAAATGGATGTATCTGGACAAT  422

seq1  ATCATCCTGAGTGAGGTAACCCAATCACAGAAAAACTCACATGATATGTA  500
      |||||||| |||||||||| ||||||||| |  || |||  ||||||| |
seq2  ATCATCCTTAGTGAGGTAA-CCAATCACAAATGAAGTCATTTGATATGCA  471

seq1  CTCACTGATAAGTGGA  516
      ||||||||||||||||
seq2  CTCACTGATAAGTGGA  487


seq1: chr8_5922619_5923819
seq2: B6Ng01-149A03.g_68_1244 (reverse)

seq1  AAGAGCAACAAGAAGGGCAGTTACCTGCAGATGACATTTTTAGCATTAAT  50
      |||||| || ||| |||||| || |||||||||||| |||||||||| ||
seq2  AAGAGC-ACCAGAGGGGCAGGTA-CTGCAGATGACA-TTTTAGCATT-AT  46

seq1  CCCTTGAATTCCAACTTACTATTTGGTTGTACAACAACATTCTTAAAACT  100
      || | ||||    ||||||  ||||| ||||| |||||||   |||| ||
seq2  CCTTGGAAT---CACTTAC-CTTTGGGTGTACCACAACAT--CTAAATCT  90

seq1  GGCAAGGTTTTTTTGTTTTACAAAGCATCTAGTTGTTATTATTATTAATC  150
      ||||||||||||    ||||||||||||||||| |||||||||||| || 
seq2  GGCAAGGTTTTT---GTTTACAAAGCATCTAGTGGTTATTATTATTCAT-  136

seq1  CTCCCATGTAACTCCTTTGGTCACGTTTATATTCATGGATTCTATAGTTC  200
      |||||| |||||||||||||||||||||||||||||||| ||||||||  
seq2  CTCCCA-GTAACTCCTTTGGTCACGTTTATATTCATGGA-TCTATAGT--  182

seq1  TTACTTTCCTAAATACATAAAACAAATGCTAGGCTCATATATTGTTACTG  250
       ||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  CTACTTTCCTAAATACAT-AAACAAATGCTAGGCTCATATA-TGTTACTG  230

seq1  TTTGTGAAAGTTTTCAAGGATGGATCAACAACCATTTGGTTTTGGATAAC  300
      |||||||||||||   |||||||||| |||||||||||| |||||||| |
seq2  TTTGTGAAAGTTT--CAGGATGGATC-ACAACCATTTGG-TTTGGATACC  276

seq1  CAGTTGGTGTGTTCTTTCTTGGGAATCACTATTTCTCCTGCTCTCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTGTGTTCTTTCTTGGGAATCACTATTTCTCCTGCTCTCAGTTC  326

seq1  TTTGTAAAATCTTTGGTTATTTATTCCTCATATATGATCAGCTTAGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAATCTTTGGTTATTTATTCCTCATATATGATCAGCTTAGAGTA  376

seq1  ATAGTTAACTGGGCCAATACTGAGCCATTTGTTACTGACAAGATAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAACTGGGCCAATACTGAGCCATTTGTTACTGACAAGATAAGCAG  426

seq1  GATGTATTGTCTCCTTCTAAGCAAGTCTTGTTTCTTGTTTCAAATTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTGTCTCCTTCTAAGCAAGTCTTGTTTCTTGTTTCAAATTCAAT  476

seq1  GTTCATTCTTACAATATAAACAAAAGGCACTAGTTAGCTTTCCTCACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTTACAATATAAACAAAAGGCACTAGTTAGCTTTCCTCACTCA  526

seq1  TTATCTACATTAATGACCTTTATATGACAGTGACTAAAATACTTCAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTACATTAATGACCTTTATATGACAGTGACTAAAATACTTCAGGAT  576

seq1  AAGTTAAAGAACAAATATTTATTTCAGCTTATGGTCTCAGAGGACTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAGAACAAATATTTATTTCAGCTTATGGTCTCAGAGGACTTAGT  626

seq1  GTCTGGTTGCTTGACCTCCTGTGCTTGGGCAGAACATCATGGCTGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTGCTTGACCTCCTGTGCTTGGGCAGAACATCATGGCTGCAGGA  676

seq1  GTCAGTGGTAAGAAAGATCATCTCTTAAGGGATAGAAAGTAAAGACTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGGTAAGAAAGATCATCTCTTAAGGGATAGAAAGTAAAGACTAAA  726

seq1  GATAGGACTAGGCAGGCCCCACTTTCTAATGCTGCATGAACACCACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGACTAGGCAGGCCCCACTTTCTAATGCTGCATGAACACCACAAAA  776

seq1  TAGCACCATTAAGTGTATAAGTGGTAAACAAATTCCTGTGATAAATAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCATTAAGTGTATAAGTGGTAAACAAATTCCTGTGATAAATAGTT  826

seq1  TATACTCAGTCAGTAAGATTATCTGACTCAGTCTTGCAACATAATTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAGTCAGTAAGATTATCTGACTCAGTCTTGCAACATAATTTAAT  876

seq1  TGGCTAGATTACTCCTTTCCACATGCTACATTCTAGTGTCTCCAAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGATTACTCCTTTCCACATGCTACATTCTAGTGTCTCCAAGAAAA  926

seq1  CAATTAATTTGCGTGTATATTTGAACACATGTGAGTTTTTTTTCCTTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATTTGCGTGTATATTTGAACACATGTGAGTTTTTTTTCCTTCCT  976

seq1  GTGTTCAGGGTTATGTGTATTTCAAGTCTTCACCTATTCAGACACTTCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGGGTTATGTGTATTTCAAGTCTTCACCTATTCAGACACTTCAA  1026

seq1  AAATTTTTCTTCAGGAGAGCTATGTTACCATAATTCCCTTCTGATTGTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCTTCAGGAGAGCTATGTTACCATAATTCCCTTCTGATTGTAC  1076

seq1  CTACACATCTGTCCTTCAAAAAGCAGTGTATTCATACTTTATTTACCAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATCTGTCCTTCAAAAAGCAGTGTATTCATACTTTATTTACCAGA  1126

seq1  CTTGTGCTTCTTGACTACCTTTATACTATTCTCATGTCTTTGTTGGAATT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTTCTTGACTACCTTTATACTATTCTCATGTCTTTGTTGGAATT  1176

seq1  C  1201
      |
seq2  C  1177


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