BAC Information

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BAC

Clone NameB6Ng01-150E11
Chromosome13 (Build37)
Map Location 85,434,111 - 85,435,260
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem161b, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150E11.bB6Ng01-150E11.g
ACCDH946397DH946398
length7091,130
definitionDH946397|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E11, 5' end.DH946398|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacgaaattcctaggcaaatgtttggacctggagggcatcatcct
gagtgaggtaacccaatcacaaaagaactcaaatgaaatgtactcactga
taagtggatattaacccagaaacttagtatagcgagatataaggtacaat
atgtaaaacatatgaaactgaagaagaacgaagaccaaagtgtggacact
ttgctcattcttagaattggaaacaatcacccatggaaggagttacagag
acaaagtttggagctgagacaaaagtatggtccatctagagactgccata
tccagggatccatcccataattagcctccaagcgatgacaccattacata
cactagcaagcctttgttgcaaggacggtgatatagctgtcccttgtgag
actaggccggggcctagcaaacacagaagtggatgctcacagtcaactat
tggatggatcacagggcccccaatggaggagctagagaaagtatccaagg
agctaaagacatctgcaaccctattggaggaacaacattatgaactaacc
agtaccccagagctcttgactctagctgcatatgtatcaaaagatgacct
agtcggccatcactggaaagagaggcccattggtcaggcaaacgttatat
gccccagtacaggggaatgccagggccaaaaaatgggaatgggtgggtag
gggagtggg

gaattctttaacacagttgtgagcactttattgcttctcgcctaatgatc
ccacaatcaattcttcctatatttgcttaagcacattcagcattcatact
ctgctatgctcaatgagttttttatcaatttgataacagaagatgcaaaa
ataggttggagtgagttacattaatatttgagatggcaatgaaatgagaa
taaataactttgacttattacaaatttgcaatatttccttatgaatacct
tttcctaggtttctaagatttatcattaaatatatttactaatactaaat
gactaaagttatttttgtaaaatcacaaatgtaatgaattattttattga
atttagaagctattctgccttccagcaccttgctgtttagtactatctgt
gaatttaattaagactgtttacttccctttgttaactgatgttacataag
atcatacagaacagcacttcctgcgaaatccttgtcacttccctctccaa
acaaataattccattttaaaaatttttttttactttttaaatatatttat
tttattatattcaacacaatatacatttttataccaatcatagaaatgat
ggacattttattaaatgaacataaatagatgtctttttgtttacttgttt
gttttatttttagtagagcttaaaatcttggcttgtactgtggtacaaac
ccaaaataagaacaacttttagacattggagttcatagtaataaggctgt
acttcagtgtccctcacatcaccaagggattttacctccatagtagctaa
gctgagagttgacagttcggctacgccaaggaatgaattgtagtcacgat
tatttagatacagatttcctgctatggtcaaagctgtttgacttgagtga
ttgttgtcattctcagccttcagaaacaggttacattcatttaagagtgg
tgtgtgtattaagatggtctatccatgaagtcattcatcagctgttcatg
acatggttctgcttgaggtggcacagacgttaggtgaggtagattctggt
cattgctacgatgattttgaaagcaattcatatcacaaaagatacttata
gtctccttattcaaattgatcatattataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_85434111_85435260
seq2: B6Ng01-150E11.g_67_1196 (reverse)

seq1  TTATAATTATTGTATCAATTTTGAATAAGAGGACCTTATAAGTTACTCTT  50
      |||||| |||   ||||| ||||||||||  |||  |||||||  |   |
seq2  TTATAA-TAT--GATCAA-TTTGAATAAGGAGAC--TATAAGTATC---T  41

seq1  TTTGTGATATGAATGCTTTTCAAAATCATCGTAGCCAATGAACCAGAATC  100
      ||||||||||||||   ||||||||||||||||| ||||| |||||||||
seq2  TTTGTGATATGAATTGCTTTCAAAATCATCGTAG-CAATG-ACCAGAATC  89

seq1  TTACCCTCACCTAACGTCTGTGCCACCCTCCAAGCAGAACCATTGTTCAT  150
      |   |||||||||||||||||||||||   |||||||||||||   ||||
seq2  T--ACCTCACCTAACGTCTGTGCCACC--TCAAGCAGAACCAT--GTCAT  133

seq1  TGAAACAGCTGATGAATGACTTCATGGATAGACCATCTTAATACACACAC  200
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GAACAGCTGATGAATGACTTCATGGATAGACCATCTTAATACACACAC  181

seq1  CACTTCTTAAATGAATGTAACCTGTTTCTGAAGGCTGAGAATGACAACAA  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-TCTTAAATGAATGTAACCTGTTTCTGAAGGCTGAGAATGACAACAA  230

seq1  TCACTCAAGTCAAACAGCTTTGACCATAGCAGGAAATCTGTATCTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAAGTCAAACAGCTTTGACCATAGCAGGAAATCTGTATCTAAATA  280

seq1  ATCGTGACTACAATTCATTCCTTGGCGTAGCCGAACTGTCAACTCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGACTACAATTCATTCCTTGGCGTAGCCGAACTGTCAACTCTCAGC  330

seq1  TTAGCTACTATGGAGGTAAAATCCCTTGGTGATGTGAGGGACACTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACTATGGAGGTAAAATCCCTTGGTGATGTGAGGGACACTGAAGT  380

seq1  ACAGCCTTATTACTATGAACTCCAATGTCTAAAAGTTGTTCTTATTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTATTACTATGAACTCCAATGTCTAAAAGTTGTTCTTATTTTGG  430

seq1  GTTTGTACCACAGTACAAGCCAAGATTTTAAGCTCTACTAAAAATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACCACAGTACAAGCCAAGATTTTAAGCTCTACTAAAAATAAAAC  480

seq1  AAACAAGTAAACAAAAAGACATCTATTTATGTTCATTTAATAAAATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTAAACAAAAAGACATCTATTTATGTTCATTTAATAAAATGTCC  530

seq1  ATCATTTCTATGATTGGTATAAAAATGTATATTGTGTTGAATATAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTATGATTGGTATAAAAATGTATATTGTGTTGAATATAATAAA  580

seq1  ATAAATATATTTAAAAAGTAAAAAAAAATTTTTAAAATGGAATTATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATTTAAAAAGTAAAAAAAAATTTTTAAAATGGAATTATTTGT  630

seq1  TTGGAGAGGGAAGTGACAAGGATTTCGCAGGAAGTGCTGTTCTGTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGGAAGTGACAAGGATTTCGCAGGAAGTGCTGTTCTGTATGAT  680

seq1  CTTATGTAACATCAGTTAACAAAGGGAAGTAAACAGTCTTAATTAAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAACATCAGTTAACAAAGGGAAGTAAACAGTCTTAATTAAATTC  730

seq1  ACAGATAGTACTAAACAGCAAGGTGCTGGAAGGCAGAATAGCTTCTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGTACTAAACAGCAAGGTGCTGGAAGGCAGAATAGCTTCTAAAT  780

seq1  TCAATAAAATAATTCATTACATTTGTGATTTTACAAAAATAACTTTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAATAATTCATTACATTTGTGATTTTACAAAAATAACTTTAGTC  830

seq1  ATTTAGTATTAGTAAATATATTTAATGATAAATCTTAGAAACCTAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTATTAGTAAATATATTTAATGATAAATCTTAGAAACCTAGGAAA  880

seq1  AGGTATTCATAAGGAAATATTGCAAATTTGTAATAAGTCAAAGTTATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCATAAGGAAATATTGCAAATTTGTAATAAGTCAAAGTTATTTA  930

seq1  TTCTCATTTCATTGCCATCTCAAATATTAATGTAACTCACTCCAACCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTCATTGCCATCTCAAATATTAATGTAACTCACTCCAACCTAT  980

seq1  TTTTGCATCTTCTGTTATCAAATTGATAAAAAACTCATTGAGCATAGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATCTTCTGTTATCAAATTGATAAAAAACTCATTGAGCATAGCAG  1030

seq1  AGTATGAATGCTGAATGTGCTTAAGCAAATATAGGAAGAATTGATTGTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAATGCTGAATGTGCTTAAGCAAATATAGGAAGAATTGATTGTGG  1080

seq1  GATCATTAGGCGAGAAGCAATAAAGTGCTCACAACTGTGTTAAAGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTAGGCGAGAAGCAATAAAGTGCTCACAACTGTGTTAAAGAATTC  1130


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