BAC Information

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BAC

Clone NameB6Ng01-150J08
Chromosome13 (Build37)
Map Location 19,375,661 - 19,514,637
singlet/doubletdoublet
Overlap geneTcrg, Tcrg-C, Stard3nl
Upstream genePou6f2, Vps41, Amph, LOC624044, Tcrg-V4, LOC624071
Downstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J08.bB6Ng01-150J08.g
ACCDH946627DH946628
length1,228697
definitionDH946627|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J08, 5' end.DH946628|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,513,412 - 19,514,637)(19,375,661 - 19,376,356)
sequence
gaattctgtacaaaatacaaaggacttgctttatgaatgcagtttggtga
gctgaatgaggctattatgggaatgcagatggacagccaacaaattcctc
atgaaggaaagaagccaaggagccactttcccagataatcagaaaagttc
tcatttcaaggcaatacactttgaaaaagaccaataggacataatggaca
gtataaaacagatgtacatacatgaggaaactccatgaatggcaaaggta
tcactgctcatcaggagagcaagactggttggtcttctacaggaaaataa
gtctgttttctgtctgtctaattctgagttgatacaagtctgagttaaac
caaaacaaatgtaagagacagaaccttttagaaacagaatagcaaatata
actttaaaacaggagtgaggatgaactttattcaacaacaaacaaaagtt
cagacataaaaaaaaatctatttactgcattaaaatgagtcacagtgaga
aagtcaccatcataaagcaattaaagatgagcaataaactttaagaaaag
ttagaaaatacaaccacagaagtttgtccaataatatagctaccacaaat
gaacaaatgtggaaaactctgctcaagaaagatgaatacaaatttcatta
aagagggaggaaagcaagttctcatttgttaccattcataggcaactaga
aaaataagaaactactgttggggctctagacaactctctgagataagtag
tgttagcttctcttgcagaggacttgagttctaggccctcacactgggag
attcacaacctcctataagtccagctacactgtagctgctacagggaatc
tgatgccctcttcagtttcctcaggcacacacacacacacacacacacac
acacacacacacacacacacacacacatttaaaagaaaaaagcaaaactg
ctgtcatccacaggaaaacaaattatttaaaagtctctaacagaatgtga
gaaaaaactgagaaccttgtccacaaaatggctattgcaatataattgta
catatcacaataattatgggaaagtgagtttgactaaacatcttccttat
ttataagtgttttagaaagcatctacctaattttttaataaagaatattt
tccttattaacctttcttaattaaccttcccttagtttcccctctggaac
cctaatcccctccccctttcctgctcat
gaattctatcggtgctgcagaattgtataattcccaaggattagatgaaa
tgagggcagggcacagagccctttcctcactgaggaacacttggaaatca
atatgtgctgaaagagaagagtcattttcttcttccacatattccttgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgtgcgtgcgtg
cgtgtgtgttgcactacctttactcattcatccaaatacagaattatgag
cttttcacatcctctctctgggataaatgctcacaaaacatgagagagca
cacatcccttggcaaactcaaaagtcatttaattttctttggttttccac
ttgggaaattagcagcggtgtctcttggcaggtctactcctgactgcctg
aggtctctccactatgatttctataagggcttcaccaattcctattacca
ccaacagggcagaaagaaggcttcttttcacctcatccttatcagccact
attctctttgactgttagtaccttcctatccggagtggtgtgggcagctt
tctaggatgtgggaggcatgtcctacactgctttctcactgagagatccc
agagccaagacaatgaagatggaggcagaactcctgcttcagatatctca
ctctacttcactttgttttcaattcttctttctacaagattaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19513412_19514637
seq2: B6Ng01-150J08.b_42_1269 (reverse)

seq1  ATGAGCAGGGGAAGGGGGGAGGGGATAGGGGGTTTTCAGAGGGGAAACTA  50
      |||||||  |||| ||||||||||||  |||  || ||||||||||||||
seq2  ATGAGCA--GGAAAGGGGGAGGGGATTAGGG--TTCCAGAGGGGAAACTA  46

seq1  A-GAAAGGTAAATAAAGAAAGGTAAATAAAGAAAATA---TCTAATAAAA  96
      | | ||||| ||| ||||||||| ||||| |||||||   | || |||||
seq2  AGGGAAGGTTAATTAAGAAAGGTTAATAAGGAAAATATTCTTTATTAAAA  96

seq1  A--TAAGTAGATGCTTCTTAAAACACATAATAATAAAGGAAGATGTTTAG  144
      |  || ||||||||||  |||||||| | ||||  |||||||||||||||
seq2  AATTAGGTAGATGCTTTCTAAAACAC-TTATAAATAAGGAAGATGTTTAG  145

seq1  TCAAACTCACTTT-CCATAATTATTGTGATATGTACCAATATATTGCAAT  193
      ||||||||||||| |||||||||||||||||||||| | |||||||||||
seq2  TCAAACTCACTTTCCCATAATTATTGTGATATGTACAATTATATTGCAAT  195

seq1  AGCCATTTTGTGGACAAGG-TCTCAG-TTTTTCTCACATTCTGTTAGAGA  241
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AGCCATTTTGTGGACAAGGTTCTCAGTTTTTTCTCACATTCTGTTAGAGA  245

seq1  CTTTTTACATAATTTGTCTTCCTGTGGATGACAGCAGTTTTGCTTCTTTT  291
      | ||||| ||||||||| ||||||||||||||||||||||||||| ||||
seq2  C-TTTTAAATAATTTGTTTTCCTGTGGATGACAGCAGTTTTGCTT-TTTT  293

seq1  CTTTTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  343

seq1  TGTGTGTGTGCCTGAGGAAACTGAAGAGGGCATCAGATTCCCTGTAGCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCCTGAGGAAACTGAAGAGGGCATCAGATTCCCTGTAGCAG  393

seq1  CTACAGTGTAGCTGGACTTATAGGAGGTTGTGAATCTCCCAGTGTGAGGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTGTAGCTGGACTTATAGGAGGTTGTGAATCTCCCAGTGTGAGGG  443

seq1  CCTAGAACTCAAGTCCTCTGCAAGAGAAGCTAACACTACTTATCTCAGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTCAAGTCCTCTGCAAGAGAAGCTAACACTACTTATCTCAGAG  493

seq1  AGTTGTCTAGAGCCCCAACAGTAGTTTCTTATTTTTCTAGTTGCCTATGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTAGAGCCCCAACAGTAGTTTCTTATTTTTCTAGTTGCCTATGA  543

seq1  ATGGTAACAAATGAGAACTTGCTTTCCTCCCTCTTTAATGAAATTTGTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACAAATGAGAACTTGCTTTCCTCCCTCTTTAATGAAATTTGTAT  593

seq1  TCATCTTTCTTGAGCAGAGTTTTCCACATTTGTTCATTTGTGGTAGCTAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCTTGAGCAGAGTTTTCCACATTTGTTCATTTGTGGTAGCTAT  643

seq1  ATTATTGGACAAACTTCTGTGGTTGTATTTTCTAACTTTTCTTAAAGTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGACAAACTTCTGTGGTTGTATTTTCTAACTTTTCTTAAAGTTT  693

seq1  ATTGCTCATCTTTAATTGCTTTATGATGGTGACTTTCTCACTGTGACTCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCATCTTTAATTGCTTTATGATGGTGACTTTCTCACTGTGACTCA  743

seq1  TTTTAATGCAGTAAATAGATTTTTTTTTATGTCTGAACTTTTGTTTGTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGCAGTAAATAGATTTTTTTTTATGTCTGAACTTTTGTTTGTTG  793

seq1  TTGAATAAAGTTCATCCTCACTCCTGTTTTAAAGTTATATTTGCTATTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAAGTTCATCCTCACTCCTGTTTTAAAGTTATATTTGCTATTCT  843

seq1  GTTTCTAAAAGGTTCTGTCTCTTACATTTGTTTTGGTTTAACTCAGACTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAAAAGGTTCTGTCTCTTACATTTGTTTTGGTTTAACTCAGACTT  893

seq1  GTATCAACTCAGAATTAGACAGACAGAAAACAGACTTATTTTCCTGTAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAACTCAGAATTAGACAGACAGAAAACAGACTTATTTTCCTGTAGA  943

seq1  AGACCAACCAGTCTTGCTCTCCTGATGAGCAGTGATACCTTTGCCATTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACCAGTCTTGCTCTCCTGATGAGCAGTGATACCTTTGCCATTCA  993

seq1  TGGAGTTTCCTCATGTATGTACATCTGTTTTATACTGTCCATTATGTCCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTCCTCATGTATGTACATCTGTTTTATACTGTCCATTATGTCCT  1043

seq1  ATTGGTCTTTTTCAAAGTGTATTGCCTTGAAATGAGAACTTTTCTGATTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTTTTTCAAAGTGTATTGCCTTGAAATGAGAACTTTTCTGATTA  1093

seq1  TCTGGGAAAGTGGCTCCTTGGCTTCTTTCCTTCATGAGGAATTTGTTGGC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAAGTGGCTCCTTGGCTTCTTTCCTTCATGAGGAATTTGTTGGC  1143

seq1  TGTCCATCTGCATTCCCATAATAGCCTCATTCAGCTCACCAAACTGCATT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCTGCATTCCCATAATAGCCTCATTCAGCTCACCAAACTGCATT  1193

seq1  CATAAAGCAAGTCCTTTGTATTTTGTACAGAATTC  1226
      |||||||||||||||||||||||||||||||||||
seq2  CATAAAGCAAGTCCTTTGTATTTTGTACAGAATTC  1228

seq1: chr13_19375661_19376356
seq2: B6Ng01-150J08.g_66_762

seq1  GAATTCTATCGGTGCTGCAGAATTGTATAATTCCCAAGGATTAGATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCGGTGCTGCAGAATTGTATAATTCCCAAGGATTAGATGAAA  50

seq1  TGAGGGCAGGGCACAGAGCCCTTTCCTCACTGAGGAACACTTGGAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCAGGGCACAGAGCCCTTTCCTCACTGAGGAACACTTGGAAATCA  100

seq1  ATATGTGCTGAAAGAGAAGAGTCATTTTCTTCTTCCACATATTCCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCTGAAAGAGAAGAGTCATTTTCTTCTTCCACATATTCCTTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCGTGCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCGTGCGTG  200

seq1  CGTGTGTGTTGCACTACCTTTACTCATTCATCCAAATACAGAATTATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTTGCACTACCTTTACTCATTCATCCAAATACAGAATTATGAG  250

seq1  CTTTTCACATCCTCTCTCTGGGATAAATGCTCACAAAACATGAGAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACATCCTCTCTCTGGGATAAATGCTCACAAAACATGAGAGAGCA  300

seq1  CACATCCCTTGGCAAACTCAAAAGTCATTTAATTTTCTTTGGTTTTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCTTGGCAAACTCAAAAGTCATTTAATTTTCTTTGGTTTTCCAC  350

seq1  TTGGGAAATTAGCAGCGGTGTCTCTTGGCAGGTCTACTCCTGACTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATTAGCAGCGGTGTCTCTTGGCAGGTCTACTCCTGACTGCCTG  400

seq1  AGGTCTCTCCACTATGATTTCTATAAGGGCTTCACCAATTCCTATTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTCCACTATGATTTCTATAAGGGCTTCACCAATTCCTATTACCA  450

seq1  CCAACAGGGCAGAAAGAAGGCTTCTTTTCACCTCATCCTTATCAGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGGCAGAAAGAAGGCTTCTTTTCACCTCATCCTTATCAGCCACT  500

seq1  ATTCTCTTTGACTGTTAGTACCTTCCTATCCGGAGTGGTGTGGGCAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTGACTGTTAGTACCTTCCTATCCGGAGTGGTGTGGGCAGCTT  550

seq1  TCTAGGATGTGGGAGGCATGTCCTACACTGC-TTCTCACTGAGAGATCCC  599
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTAGGATGTGGGAGGCATGTCCTACACTGCTTTCTCACTGAGAGATCCC  600

seq1  AGAGCCAAGACAATGAAGATGGAGGCAGAACTCCTGCTTCAGATATCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAGACAATGAAGATGGAGGCAGAACTCCTGCTTCAGATATCTCA  650

seq1  CTCTACTTCACTTTGTTTTCAATTCTTCTTTCTACAAGATTAATTTT  696
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTCACTTTGTTTTCAATTCTTCTTTCTACAAGATTAATTTT  697