BAC Information

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BAC

Clone NameB6Ng01-151C24
Chromosome13 (Build37)
Map Location 49,536,261 - 49,537,367
singlet/doubletsinglet
Overlap geneIppk
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2
Downstream geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151C24.bB6Ng01-151C24.g
ACCDH947076DH947077
length1,1051,175
definitionDH947076|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C24, 5' end.DH947077|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtaagaacagctagtgctcctaaccaacaaactttcttcta
atttacctggttttttttttcttaaagtgtgtgttccctggattcttaaa
gaacttgagacactttctgaggtgattctggcaagttttgctacttttta
catataaaaaccatggccaacttatatggtatgattaagaagtatatatt
ccttaaaattatgaaataatacccattcataactggtagttagatctcct
tctagtgtgattcatgctatcagtttggttatctttccagacacgttcct
atggtaacagcatgtacataacacaggtgctgctgctggcgtctcttttg
gattgtttgtacttgttctacccagtgctcccccccccgcaaccccccgt
acagtgatctttgagcgttttgtgttgtatgtttttctcaaaatgtattt
gatacacaagtatccctttaaagcaagcatgacatcatattacatgtgct
gctttgtcagctgagtaagcgctgataggtgctagtccgtcttttggagt
ggctgtattcacactcattcaccccttcatggcgtgtggcctgccgagta
agtgagcatcctttcctcctgcagtaaatatcttagtatctgcagcaaaa
gccatgcccccatccctgttgcctctttcgctctgtgtagtgcttttaga
ttcctttaggttttctcagttgggtcgtgtatacattttaaacttcggtg
gctacaacaaaagattgtgtcgggttatcattctgctggcagcacaagac
tgcatgtcctatccctggctgttagcagcttagagacttgccatcctcat
ggccaaacctttaagtacctgcttttttcttctgctcacacgagggctgc
actggcactgactgaagcttagagtaactggagtttcctagggtgagggg
tcaagttggctccttgctattaagggttgtatacctaggtccttttcagt
caggctgcaatcgcatggtggtctcatgtattcatacaacctattggtgt
tttaccaggtagcaactggaaagtgtaagaaaatctagtaatactggtcc
cctcg
gaattctcacctgaggaataccgaatggctgagaagcacctgagaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaattgctaagatcaaaaattcagttgacagc
agatgctgggaggatgtagagaaagaggaacactcctccatttttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacataatactgctggaggatcccacactacctctcctgggca
tatatccagaagatgtttcaactagtaagaaagacacttgctccactatg
tccatagcagccttaattataatagccagaagctggaaagtacccagatg
cccctcaacagaggaatagatacaaaaaaaatgtgctacatatacacagt
ggagtattactcagctattaaaaagaatgaatttatgaaattcctaggca
aatgggtggacctggagggcatcatcctgagtgaggtaacccaatcacaa
aagaactcaaatgatttgtactcactgataagtggatattagcccagaaa
cttagaatacccaagatataagataccatttgctaaacacatgaaactca
agaagaatgaagactgaagtgtggacactttgcaccttcttagaattgag
aacaaaacaccgatggaagaagttacagagacacagtttggagctgagag
aaaaggatggaccatctagagactgccatatccggggatccatcccataa
gcagcttccaaacgctgacaccattgtatacatacactggcaagtttttg
ctgaaaggaccctgatatagctgtctcttgtgagactatgccagggcctc
gcaaacacaaaatggatgctcacagtcagctattggatggatcacagggc
cccaatggagagctagagaaagtacccaaggagctaaagggatctgcaac
ctataagtggacacattatgacacagtaccccggagctcttgactctagc
tgaatatgtatcaaagatggcctagtgggcatcactgaaagaaaagccat
tggacatgccaaagttatatggccggtagaagggaaatgccaaggcaaaa
aattggaattaatgggggggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49536261_49537367
seq2: B6Ng01-151C24.b_45_1149

seq1  GAATTCTCTGTAAGAACAGCTAGTGCTCCTAACCAACAAACTTTCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAAGAACAGCTAGTGCTCCTAACCAACAAACTTTCTTCTA  50

seq1  ATTTACCTGGTTTTTTTTTTCTTAAAGTGTGTGTTCCCTGGATTCTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTGGTTTTTTTTTTCTTAAAGTGTGTGTTCCCTGGATTCTTAAA  100

seq1  GAACTTGAGACACTTTCTGAGGTGATTCTGGCAAGTTTTGCTACTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAGACACTTTCTGAGGTGATTCTGGCAAGTTTTGCTACTTTTTA  150

seq1  CATATAAAAACCATGGCCAACTTATATGGTATGATTAAGAAGTATATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAAACCATGGCCAACTTATATGGTATGATTAAGAAGTATATATT  200

seq1  CCTTAAAATTATGAAATAATACCCATTCATAACTGGTAGTTAGATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAATTATGAAATAATACCCATTCATAACTGGTAGTTAGATCTCCT  250

seq1  TCTAGTGTGATTCATGCTATCAGTTTGGTTATCTTTCCAGACACGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTGATTCATGCTATCAGTTTGGTTATCTTTCCAGACACGTTCCT  300

seq1  ATGGTAACAGCATGTACATAACACAGGTGCTGCTGCTGGCGTCTCTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACAGCATGTACATAACACAGGTGCTGCTGCTGGCGTCTCTTTTG  350

seq1  GATTGTTTGTACTTGTTCTACCCAGTGCTCCCCCCCCCGCCCCCCCCCGT  400
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GATTGTTTGTACTTGTTCTACCCAGTGCTCCCCCCCCCGCAACCCCCCGT  400

seq1  ACAGTGATCTTTGAGCGTTTTGTGTTGTATGTTTTTCTCAAAATGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATCTTTGAGCGTTTTGTGTTGTATGTTTTTCTCAAAATGTATTT  450

seq1  GATACACAAGTATCCCTTTAAAGCAAGCATGACATCATATTACATGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAAGTATCCCTTTAAAGCAAGCATGACATCATATTACATGTGCT  500

seq1  GCTTTGTCAGCTGAGTAAGCGCTGATAGGTGCTAGTCCGTCTTTTGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCAGCTGAGTAAGCGCTGATAGGTGCTAGTCCGTCTTTTGGAGT  550

seq1  GGCTGTATTCACACTCATTCACCCCTTCATGGCGTGTGGCCTGCCGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATTCACACTCATTCACCCCTTCATGGCGTGTGGCCTGCCGAGTA  600

seq1  AGTGAGCATCCTTTCCTCCTGCAGTAAATATCTTAGTATCTGCAGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCATCCTTTCCTCCTGCAGTAAATATCTTAGTATCTGCAGCAAAA  650

seq1  GCCATGCCCCCATCCCTGTTGCCTC-TTCGCTCTGTGTAGTGCTTTTAGA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCATGCCCCCATCCCTGTTGCCTCTTTCGCTCTGTGTAGTGCTTTTAGA  700

seq1  TTCCTTTAGGTTTTCTCAGTTGGGTCGTGTATACATTTTAAACTTCGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGGTTTTCTCAGTTGGGTCGTGTATACATTTTAAACTTCGGTG  750

seq1  GCTACAACAAAAGATTGTGTCGGGTTATCATTCTGCTGGCAGCACAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACAAAAGATTGTGTCGGGTTATCATTCTGCTGGCAGCACAAGAC  800

seq1  TGCATGTCCTATCCCTGGCTGTTAGCAGCTTAGAGACTTGCCATCCTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCCTATCCCTGGCTGTTAGCAGCTTAGAGACTTGCCATCCTCAT  850

seq1  GGCCAAACCTTTAAGTACCTGCTTTTTTCTTCTGCTCACACGAGGGCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACCTTTAAGTACCTGCTTTTTTCTTCTGCTCACACGAGGGCTGC  900

seq1  ACTGGCACTGACTGAAGCTAAGAGTAACTGGAGTTTCCTAGGGTGAGGGG  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTGGCACTGACTGAAGCTTAGAGTAACTGGAGTTTCCTAGGGTGAGGGG  950

seq1  TCAAGTTGGCTCCTTGCTATTTAGGGTTGTATACCTAGGTCCTTTTCCAG  999
      ||||||||||||||||||||| |||||||||||||||||||||||||   
seq2  TCAAGTTGGCTCCTTGCTATTAAGGGTTGTATACCTAGGTCCTTTTC--A  998

seq1  GTCAAGGCTGC-AGCGCATTGTGGTCTCATGTATTTCATACCATCCTATT  1048
      ||| ||||||| | ||||| ||||||||||||| |||||| || ||||||
seq2  GTC-AGGCTGCAATCGCATGGTGGTCTCATGTA-TTCATA-CAACCTATT  1045

seq1  GGTGTTTTACCAGGTAGCAACTGGAAAGTGGAAGAAAATC-AGTAAATAC  1097
      |||||||||||||||||||||||||||||| ||||||||| ||| |||||
seq2  GGTGTTTTACCAGGTAGCAACTGGAAAGTGTAAGAAAATCTAGT-AATAC  1094

seq1  T-GTCCCCTCG  1107
      | |||||||||
seq2  TGGTCCCCTCG  1105