BAC Information

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BAC

Clone NameB6Ng01-152K06
Chromosome13 (Build37)
Map Location 35,149,544 - 35,300,151
singlet/doubletdoublet
Overlap genenone
Upstream geneBphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K06.bB6Ng01-152K06.g
ACCDH948166DH948167
length9681,026
definitionDH948166|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K06, 5' end.DH948167|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,149,544 - 35,150,441)(35,299,618 - 35,300,151)
sequence
gaattctttatattaaagtctgagtgctcatgactttagaatgtgagttt
atttagaaacagggtcaatgtaaatgtaattagttctgttcaaatgggac
tgcattggagtggggtaagttctagtctggtttgactgatgttcctatta
ggggagaaatgtggacaaagaagacacacacacagggagagggagcactg
tgtgaaggtttgggatgcattctcaaagccaaggagctactggctaccag
gatgttcatttgcagcctgctggagggagcatggccctctccacaccagg
cacttggacttctagcctccagaattataagacaatacgtttctttgatt
tgatcatcaatttttataactaaaaaattacatttgtaacatattatctc
tctcttatttactgttcattttttatagtttccatcagttgcctacagtt
aactagagtctgaaaacattaaatagtagcctctggaaataactcacaag
ttttaatctgaacccttgagaaggtcagctcaggaaccttgggaaggtca
tggaacacttgcccctctgaaagggagaggctgattaacattcctcagac
cacagggcaggaactgacctgtgggtggggacacattccgcaggacagac
tttgcccacgttcagacaagggaagtccttgccacctcaaagaccaatca
gtttaaaaagtcacattgttctgccaatcacattgtgcctagtggctgct
gccctgaaagctctataaaaagctcactgactgagctgtgtgggggtcat
tgcctctccttcgggcctgagacgaccccagtgccctggaataataaatt
cctcttgctttttgcaccgattctgtctcacgtggctcattcaagggtcc
tgggtaagctaatgctccccggagtcttacaccctctgtcgggcatattc
tctctctatgatccaccc
gaattcacactccctggttactgtggaaaaattcaagaatcactgcttta
agagtaagctattacatcaccagcaatttcatgtctgggtatttacccta
aagaaaggaaagcagactttggaggaggtatttgcatagctagcttcagg
gcagtgttatttacagtagccagaaagcagaagatgcctaagtgtccatc
aacagatgactgggcatcagttactgtacgtgatgctcttagcaggcaag
gataagggaggaagacttagtctagctcatggtttgaggttacacgctgg
ggaaggtatgactggagcctgatgtagctggtcacactgtgtcaactgtc
agtgacacaggaagcaggcagtgagaaacgctgctgctcagctcttgctt
ctcatagccaatctggatctcatccaatggatgcttccacctatactcag
ggtgagtcttccttccagggttacacctctttagacacaccctcatagac
acacccagaggcgtgtttctgtgctgagtctaagtccagtcaagatgaca
atggagattaaccatcaaaacaaataaatacaacaacacacaggcacaca
caaacacatgcacaatggaactttactcaaattaaaatggaagacatcct
gactcgtattacaacacgagtgaaccttgaagccattatgtgaattagca
taaactaaacaccaaaggacacataacgtatcattccactcacatgaggt
atttagcagagttaaattaatggagttagaaaatagttaggattgccagg
gccagggggaaggggatgggaagttagaattgtaatgggcatgtagcatg
ggcttaacataacaaagaattgtggaagatgagcagcagtgatggttaac
tagcatgtaatgtgctgaagttgccctagacagaacatcttaaaaataaa
tttcacatgacaaattttattttaataatactatactaaacggaggtgca
tgcaaaaaaattagggtgaaatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_35149544_35150441
seq2: B6Ng01-152K06.b_44_940

seq1  GAATTCTTTATATTAAAGTCTGAGTGCTCATGACTTTAGAATGTGAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATTAAAGTCTGAGTGCTCATGACTTTAGAATGTGAGTTT  50

seq1  ATTTAGAAACAGGGTCAATGTAAATGTAATTAGTTCTGTTCAAATGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAACAGGGTCAATGTAAATGTAATTAGTTCTGTTCAAATGGGAC  100

seq1  TGCATTGGAGTGGGGTAAGTTCTAGTCTGGTTTGACTGATGTTCCTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGGAGTGGGGTAAGTTCTAGTCTGGTTTGACTGATGTTCCTATTA  150

seq1  GGGGAGAAATGTGGACAAAGAAGACACACACACAGGGAGAGGGAGCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAATGTGGACAAAGAAGACACACACACAGGGAGAGGGAGCACTG  200

seq1  TGTGAAGGTTTGGGATGCATTCTCAAAGCCAAGGAGCTACTGGCTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGTTTGGGATGCATTCTCAAAGCCAAGGAGCTACTGGCTACCAG  250

seq1  GATGTTCATTTGCAGCCTGCTGGAGGGAGCATGGCCCTCTCCACACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCATTTGCAGCCTGCTGGAGGGAGCATGGCCCTCTCCACACCAGG  300

seq1  CACTTGGACTTCTAGCCTCCAGAATTATAAGACAATACGTTTCTTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGACTTCTAGCCTCCAGAATTATAAGACAATACGTTTCTTTGATT  350

seq1  TGATCATCAATTTTTATAACTAAAAAATTACATTTGTAACATATTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATCAATTTTTATAACTAAAAAATTACATTTGTAACATATTATCTC  400

seq1  TCTCTTATTTACTGTTCATTTTTTATAGTTTCCATCAGTTGCCTACAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTTACTGTTCATTTTTTATAGTTTCCATCAGTTGCCTACAGTT  450

seq1  AACTAGAGTCTGAAAACATTAAATAGTAGCCTCTGGAAATAACTCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGTCTGAAAACATTAAATAGTAGCCTCTGGAAATAACTCACAAG  500

seq1  TTTTAATCTGAACCCTTGAGAAGGTCAGCTCAGGAACCTTGGGAAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTGAACCCTTGAGAAGGTCAGCTCAGGAACCTTGGGAAGGTCA  550

seq1  TGGAACACTTGCCCCTCTGAAAGGGAGAGGCTGATTAACATTCCTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTTGCCCCTCTGAAAGGGAGAGGCTGATTAACATTCCTCAGAC  600

seq1  CACAGGGCAGGAACTGACCTGTGGGTGGGGACACATTCCGCAGGACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGCAGGAACTGACCTGTGGGTGGGGACACATTCCGCAGGACAGAC  650

seq1  TTTGCCCACGTTCAGACAAGGGAAGTCCTTGCCACCTCAAAGACCAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCACGTTCAGACAAGGGAAGTCCTTGCCACCTCAAAGACCAATCA  700

seq1  GTTTAAAAAGTCACATTGTTCTGCCAATCACATTGTGCCTAGTGGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAGTCACATTGTTCTGCCAATCACATTGTGCCTAGTGGCTGCT  750

seq1  GCCCTGAAAGCTCTATAAAAAGCTCACTGACTGAGCTGTGTGGGGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAAGCTCTATAAAAAGCTCACTGACTGAGCTGTGTGGGGGTCAT  800

seq1  TGCCTCTCCTTCGGGCCTGAGACGACCCCAGTGCCCTGGAATAATAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCTTCGGGCCTGAGACGACCCCAGTGCCCTGGAATAATAAATT  850

seq1  CCTCTTGCTTTTTGCACCGATTCTGTCTCCACGTGGCTCATTCAAGGG  898
      |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCTTGCTTTTTGCACCGATTCTGTCT-CACGTGGCTCATTCAAGGG  897

seq1: chr13_35299618_35300151
seq2: B6Ng01-152K06.g_563_1093 (reverse)

seq1  TGAAATTCAACCCTATTTTTTTTGCATGCACCTCTGTTTTAGTATAGTAT  50
      |||||||  |||||| |||||||||||||||||| | |||||||||||||
seq2  TGAAATTTCACCCTAATTTTTTTGCATGCACCTCCG-TTTAGTATAGTAT  49

seq1  ATATAAAATAAAATTTGTCATGTGAAAATTTTATTTTTAAGATGTTTCTG  100
         ||||||||||||||||||||||||  ||||||||||||||| |||||
seq2  TATTAAAATAAAATTTGTCATGTGAAA--TTTATTTTTAAGATG-TTCTG  96

seq1  TCTAGGGCAAC-TCAGCACATTTACATGCTAGTTAACCATCACTGCTGCT  149
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TCTAGGGCAACTTCAGCACA-TTACATGCTAGTTAACCATCACTGCTGCT  145

seq1  CATCTT-CACAATTCTTTGTTTTGTTAAGCCCATGCTACATGCCCATTAC  198
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CATCTTCCACAATTCTTTGTTATGTTAAGCCCATGCTACATGCCCATTAC  195

seq1  -ATTCTAACTTCCCATCCCCTTCCCCCTGGCCCTGGCAATCCTAACCTAT  247
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTCTAACTTCCCATCCCCTTCCCCCTGGCCCTGGCAATCCTAA-CTAT  244

seq1  TTTCTAACTCCATTAATTTAACTCTGCTAAATACCTCATGTGAGTGGAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTCCATTAATTTAACTCTGCTAAATACCTCATGTGAGTGGAAT  294

seq1  GATACGTTATGTGTCCTTTGGTGTTTAGTTTATGCTAATTCACATAATGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGTTATGTGTCCTTTGGTGTTTAGTTTATGCTAATTCACATAATGG  344

seq1  CTTCAAGGTTCACTCGTGTTGTAATACGAGTCAGGATGTCTTCCATTTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGTTCACTCGTGTTGTAATACGAGTCAGGATGTCTTCCATTTTA  394

seq1  ATTTGAGTAAAGTTCCATTGTGCATGTGTTTGTGTGTGCCTGTGTGTTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTAAAGTTCCATTGTGCATGTGTTTGTGTGTGCCTGTGTGTTGT  444

seq1  TGTATTTATTTGTTTTGATGGTTAATCTCCATTGTCATCTTGACTGGACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTTGTTTTGATGGTTAATCTCCATTGTCATCTTGACTGGACT  494

seq1  TAGACTCAGCACAGAAACACGCCTCTGGGTGTGTCTA  534
      |||||||||||||||||||||||||||||||||||||
seq2  TAGACTCAGCACAGAAACACGCCTCTGGGTGTGTCTA  531