BAC Information

Click to search

BAC

Clone NameB6Ng01-155J04
Chromosome13 (Build37)
Map Location 46,923,561 - 46,924,658
singlet/doubletsinglet
Overlap geneKif13a
Upstream geneAtxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153
Downstream geneLOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155J04.bB6Ng01-155J04.g
ACCDH950319DH950320
length3961,099
definitionDH950319|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J04, 5' end.DH950320|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
cagggactgttcactgctgaggagaggcgaacactgaggcgctcagctgc
ccccatacccaggggcccatggggggcggtgactaagtttaaagccatgc
agatctatagatatagtgttgctgtgcctcatgtaaagatcatgcttata
ttattcaaatgccgatttctctgccggcccccccccccccccccgtgtct
agttggaagcggacgtggcattgtggtgcgtattgtggagattctaagaa
tctcctgtttcaatgttgcgtaaacatcgctcttggagtatctctgattg
gtcaataaaagctgatcagccaatgactgggcagaagagagaacagggct
ggacttccgattatagtgagggggaagggtagaggagaggaagaga
gaattcttgcataccgtggacactctagttaatgaaacaggtgcctccat
atcctgtgactcacagtcctatccccagaagaatactctagaaactcctg
tacctactgcccaagaagcccgcgcatgtgcgcccagagcggcactatct
agagcagcactctatggaggagatgagacatgaagcctatgtgtgaaggg
aaagaatggtgtttgataattcgacgagatgttaaacaatagtgaacgct
atcacattattaacccctatataaaaatgcatgagatgagtatattgctg
gtgctgtttatacaaggttaaaaattgtacaaaatcgggctggtgagatg
gctcagtgggtaagagcacccgactgctcttccaaaggaccggagttcaa
atcccagcaaccacatggtggctcacaaccatctgtaacgagatctgacg
ccctcttctggagtgcctgaagacagctacagtgtacctacatataataa
taaaaaaaattgtacaaaatcatggatgaatgctacagaagaggaagagg
atggtaagtttaaaatttctagtagtatttgtctccaggaccaataggga
agggaataagagtccagggatcatagagaaagattaaaaattattggcta
gattccacctgctaagacaagtgggtgtgcaggcaggggttgattttgct
gctcttcatacctgacaagagtttcttctgcataaacagttaataattct
ttaaagtaaacacaaatgtttcaatgacttggggagaggcagtcttgagg
tctataaagttattgttaaaactcttgcttttcattggagaccacagtgc
tgggaagtggggcagaaatgttacacatcccacagctgctaaaactattg
gaaagtattttaatgaacaccaaagtgtacatcagggtacacagggtatt
ctggatattcgaacggttatttataaatagcttgaagatgtgaacacgtc
tcccctctgcatgactgaaaaccagcagggagactacctagtgtttaccc
agggactcttgaatggacagggtttaaagtcagcttcattttctatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46923561_46924658
seq2: B6Ng01-155J04.g_66_1164

seq1  GAATTCTTGCATACCGTGGACACTCTAGTTAATGAAACAGGTGCCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATACCGTGGACACTCTAGTTAATGAAACAGGTGCCTCCAT  50

seq1  ATCCTGTGACTCACAGTCCTATCCCCAGAAGAATACTCTAGAAACTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGACTCACAGTCCTATCCCCAGAAGAATACTCTAGAAACTCCTG  100

seq1  TACCTACTGCCCAAGAAGCCCGCGCATGTGCGCCCAGAGCGGCACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACTGCCCAAGAAGCCCGCGCATGTGCGCCCAGAGCGGCACTATCT  150

seq1  AGAGCAGCACTCTATGGAGGAGATGAGACATGAAGCCTATGTGTGAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCACTCTATGGAGGAGATGAGACATGAAGCCTATGTGTGAAGGG  200

seq1  AAAGAATGGTGTTTGATAATTCGACGAGATGTTAAACAATAGTGAACGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGTGTTTGATAATTCGACGAGATGTTAAACAATAGTGAACGCT  250

seq1  ATCACATTATTAACCCCTATATAAAAATGCATGAGATGAGTATATTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTATTAACCCCTATATAAAAATGCATGAGATGAGTATATTGCTG  300

seq1  GTGCTGTTTATACAAGGTTAAAAATTGTACAAAATCGGGCTGGTGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTTATACAAGGTTAAAAATTGTACAAAATCGGGCTGGTGAGATG  350

seq1  GCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGACCGGAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGACCGGAGTTCAA  400

seq1  ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACG  450

seq1  CCCTCTTCTGGAGTGCCTGAAGACAGCTACAGTGTACCTACATATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGAGTGCCTGAAGACAGCTACAGTGTACCTACATATAATAA  500

seq1  TAAAAAAAATTGTACAAAATCATGGATGAATGCTACAGAAGAGGAAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATTGTACAAAATCATGGATGAATGCTACAGAAGAGGAAGAGG  550

seq1  ATGGTAAGTTTAAAATTTCTAGTAGTATTTGTCTCCAGGACCAATAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGTTTAAAATTTCTAGTAGTATTTGTCTCCAGGACCAATAGGGA  600

seq1  AGGGAATAAGAGTCCAGGGATCATAGAGAAAGATTAAAAATTATTGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAGAGTCCAGGGATCATAGAGAAAGATTAAAAATTATTGGCTA  650

seq1  GATTCCACCTGCTAAGACAAGTGGGTGTGCAGGCAGGGGTTGATTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCACCTGCTAAGACAAGTGGGTGTGCAGGCAGGGGTTGATTTTGCT  700

seq1  GCTCTTCATACCTGACAAGAG-TTCTTCTGCATAAACAGTTAATAATTCT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTCTTCATACCTGACAAGAGTTTCTTCTGCATAAACAGTTAATAATTCT  750

seq1  TTAAAGTAAACACAAATGTTTCAATGACTTGGGGAGAGGCAGTCTTGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAAACACAAATGTTTCAATGACTTGGGGAGAGGCAGTCTTGAGG  800

seq1  TCTATAAAGTTATTGTTAAAACTCTTGC-TTTCATTGGAGACCACAGTGC  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTATAAAGTTATTGTTAAAACTCTTGCTTTTCATTGGAGACCACAGTGC  850

seq1  TGGGAAGT-GGGCAGAAATGTTACACATCCCACAGCTGCTAAAAACTATT  897
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TGGGAAGTGGGGCAGAAATGTTACACATCCCACAGCTGCT-AAAACTATT  899

seq1  GGAAAGTA-TTTAATGAACACCAAAGTGTACATCAGGGTACACAGGGAAT  946
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  GGAAAGTATTTTAATGAACACCAAAGTGTACATCAGGGTACACAGGGTAT  949

seq1  TCTGGATA-TCGAACGGTTATTTATTAAATAGCTTGAAGATGTGAACACG  995
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGGATATTCGAACGGTTATTTA-TAAATAGCTTGAAGATGTGAACACG  998

seq1  TCCACACACTGCATGACTGAAACACAGCAGGGAGACATACCCAAGTG-TT  1044
      ||  | | ||||||||||||||  |||||||||||| || || |||| ||
seq2  TCTCCCCTCTGCATGACTGAAAACCAGCAGGGAGAC-TA-CCTAGTGTTT  1046

seq1  ACCCAAGGGGACTCTTGAGT-GACAGGGTTAAAGGTCAGCTTCATTTCTT  1093
      |||||  ||||||||||| | ||||||||| || |||||||||||||  |
seq2  ACCCA--GGGACTCTTGAATGGACAGGGTTTAAAGTCAGCTTCATTTTCT  1094

seq1  ATACT  1098
      |||||
seq2  ATACT  1099