BAC Information

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BAC

Clone NameB6Ng01-155O06
Chromosome13 (Build37)
Map Location 65,485,969 - 65,724,971
singlet/doubletdoublet
Overlap geneLOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
Upstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750
Downstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155O06.bB6Ng01-155O06.g
ACCDH950542DH950543
length1,096942
definitionDH950542|Mus musculus domesticus DNA, BAC clone: B6Ng01-155O06, 5' end.DH950543|Mus musculus domesticus DNA, BAC clone: B6Ng01-155O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,723,855 - 65,724,971)(65,485,969 - 65,486,856)
sequence
gaattctctaatgaatcataagatcatatttgtgagtgaagcatttgtca
catttactacatttgtaaggcttctttcttgtatgaattatctgatgact
actaggactgtgtttgttgttacagcatttgtcacactcactacatttat
aaggtttctctccagtatgaattctctgatgaatattaagactgtatttg
tgaaaaaagcatttgtcacattcactacatctgtaaggtttctctcctgt
atggattctctgatgttgtctaagcttgcatttcttggtgaaacatctgg
cacgttcactacatttgtaaggtttctttccactattggtttgtttcagc
ctgagtatttgtgtagagttaaaaactttatcaagcactataccattgtg
ctctttctttcctatgtggattccttgatgtagaccagtgatagaacaca
aatttaaacagtttatacagtttttatgtttgcaaggtcctctggtgttt
ccattttgatgactgtttatgtttgatgactcaacacgtgtattcctgaa
gttagcttggtaaagtacactttgggtgtattcaggaataatttttgcca
tgctttgacctttgtaagacttctcctgtatattcacacactgggatgtg
ttggaccttttaatcattatgcatttatttgtttttaatgaggctttact
ggataaaaatatcttttaaatcatcttcatgttcatgtccatatgaaaat
tcaaatatgtatttatcatatttaaaagaatagatatgttattcttatat
aagtgaggacaatgtccactatgaataacatctcctggtctagttgtggt
aaactctttaaaagtaatttcagccggtggtggtggcacactcctttaat
cccagcacttgggaggcagatgcaggcagatttctgagtcacggccagcc
agggctacacagagaaaccctgtctcaaaaaaaaaaaaaaagagattaac
tagaccttaggatagagacatgttgtatactagaatgggataggtcatga
catacattgtgacagattgtatgatcacatcctaatatagacgtta
gaattcactgacctcactgtggtgaaggtcttgtgggagacatttccatt
agtgatttttctcacttaatgaaacacagtcatttcataatgaaactgtc
ttttcacatacatttacaaagccttattttgcaggcacaatctgaatctc
aatgtcctttccatagaatattcccgtctttgtatgttatctggtattct
tagcatctccctagtacattggaaagctatcccaaagtgcagtgcttctg
tgctatcatatgcattactgtcacggtgcttctcactctgctaacatgca
ttcttctttctcttttcaaatcagtgccttttattgcatcaggaagctat
gagattccaaatcccaacagtggcaatttaccatttaggtgatgtcttag
attctgttgctgtaaaaaccaccatagccaaagaaacatgtgagaaaagt
gtttatttacttatgtaccttggtcacagtatattgtgtgaagccaaggc
cttatactctacacaaaggataaaccggatgagaaagaaattagggaaac
aacaaccttcactataggtacaaataatatgaaataccttggtgtgattc
tatctaagaaagtgaaagatttgtatgataagaacttgaattctctgaaa
aaagaaatcaaagaagatctcagaagatggaaagatctcccatgctcata
gaatggaaggatcaatacagtaaaaatggctatcttgccaaaagcaatct
acagattcaatgcaatccccatcaaaattccaactaaattcttcatcgaa
ttagaaagggcaatttgcaaattcatctggaataacaaaaagacctagga
tagcaaaagctattctcaatgataaaagaacctctggtggaatcaccatg
cctgacttcaactgtactacagagcaattgtgataaaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65723855_65724971
seq2: B6Ng01-155O06.b_47_1142 (reverse)

seq1  TAACGTCTATTATTAAGGATGTGATCATACAAATCTGGTCACAATGTTAT  50
      ||||||||| |||| ||||||||||||||| ||||| ||||||||| |||
seq2  TAACGTCTA-TATT-AGGATGTGATCATAC-AATCT-GTCACAATG-TAT  45

seq1  GTCATTGAACCCTATCCCAATTCTAGTATACAACATGGTCTCTATCCCTT  100
      |||| |||  |||||||| ||||||||||||||||| ||||||||||  |
seq2  GTCA-TGA--CCTATCCC-ATTCTAGTATACAACAT-GTCTCTATCC--T  88

seq1  AAGGTTCTGAGTTAATCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGT  150
      |||| ||| ||||||||      | |||||||||||||||||||||||||
seq2  AAGG-TCT-AGTTAATC------TCTTTTTTTTTTTTTTTGAGACAGGGT  130

seq1  TTCTCTGTGTAGCCCTGGCTGGCCGTGAACTCAGAAATCTGCCTGCATCT  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGGCCGTG-ACTCAGAAATCTGCCTGCATCT  179

seq1  GCCTCCCAAGTGCTGGGATTAAAGGAGTGTGCCACCACCACCGGCCTGAA  250
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  GCCTCCCAAGTGCTGGGATTAAAGGAGTGTGCCACCACCACCGGCTGAAA  229

seq1  TTACTTTTAAAGAGTTTACCACAACTAGACCAGGAGATGTTATTCATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTAAAGAGTTTACCACAACTAGACCAGGAGATGTTATTCATAGT  279

seq1  GGACATTGTCCTCACTTATATAAGAATAACATATCTATTCTTTTAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGTCCTCACTTATATAAGAATAACATATCTATTCTTTTAAATAT  329

seq1  GATAAATACATATTTGAATTTTCATATGGACATGAACATGAAGATGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACATATTTGAATTTTCATATGGACATGAACATGAAGATGATTT  379

seq1  AAAAGATATTTTTATCCAGTAAAGCCTCATTAAAAACAAATAAATGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATTTTTATCCAGTAAAGCCTCATTAAAAACAAATAAATGCATA  429

seq1  ATGATTAAAAGGTCCAACACATCCCAGTGTGTGAATATACAGGAGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAAAAGGTCCAACACATCCCAGTGTGTGAATATACAGGAGAAGTC  479

seq1  TTACAAAGGTCAAAGCATGGCAAAAATTATTCCTGAATACACCCAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGGTCAAAGCATGGCAAAAATTATTCCTGAATACACCCAAAGTG  529

seq1  TACTTTACCAAGCTAACTTCAGGAATACACGTGTTGAGTCATCAAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACCAAGCTAACTTCAGGAATACACGTGTTGAGTCATCAAACATA  579

seq1  AACAGTCATCAAAATGGAAACACCAGAGGACCTTGCAAACATAAAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCATCAAAATGGAAACACCAGAGGACCTTGCAAACATAAAAACTG  629

seq1  TATAAACTGTTTAAATTTGTGTTCTATCACTGGTCTACATCAAGGAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGTTTAAATTTGTGTTCTATCACTGGTCTACATCAAGGAATCC  679

seq1  ACATAGGAAAGAAAGAGCACAATGGTATAGTGCTTGATAAAGTTTTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAAAGAAAGAGCACAATGGTATAGTGCTTGATAAAGTTTTTAAC  729

seq1  TCTACACAAATACTCAGGCTGAAACAAACCAATAGTGGAAAGAAACCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAAATACTCAGGCTGAAACAAACCAATAGTGGAAAGAAACCTTA  779

seq1  CAAATGTAGTGAACGTGCCAGATGTTTCACCAAGAAATGCAAGCTTAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGTGAACGTGCCAGATGTTTCACCAAGAAATGCAAGCTTAGAC  829

seq1  AACATCAGAGAATCCATACAGGAGAGAAACCTTACAGATGTAGTGAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGAGAATCCATACAGGAGAGAAACCTTACAGATGTAGTGAATGT  879

seq1  GACAAATGCTTTTTTCACAAATACAGTCTTAATATTCATCAGAGAATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTTTTTTCACAAATACAGTCTTAATATTCATCAGAGAATTCA  929

seq1  TACTGGAGAGAAACCTTATAAATGTAGTGAGTGTGACAAATGCTGTAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGAGAAACCTTATAAATGTAGTGAGTGTGACAAATGCTGTAACA  979

seq1  ACAAACACAGTCCTAGTAGTCATCAGATAATTCATACAAGAAAGAAGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAGTCCTAGTAGTCATCAGATAATTCATACAAGAAAGAAGCCT  1029

seq1  TACAAATGTAGTAAATGTGACAAATGCTTCACTCACAAATATGATCTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTAGTAAATGTGACAAATGCTTCACTCACAAATATGATCTTAT  1079

seq1  GATTCATTAGAGAATTC  1117
      |||||||||||||||||
seq2  GATTCATTAGAGAATTC  1096

seq1: chr13_65485969_65486856
seq2: B6Ng01-155O06.g_69_956

seq1  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50

seq1  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAATGAAACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAATGAAACTGTC  100

seq1  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150

seq1  AATGTCCTTTCCATAGAATATTCCCGTCTTTGTATGTTATCTGGTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTTCCATAGAATATTCCCGTCTTTGTATGTTATCTGGTATTCT  200

seq1  TAGCATCTCCCTAGTACATTGGAAAGCTATCCCAAAGTGCAGTGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTCCCTAGTACATTGGAAAGCTATCCCAAAGTGCAGTGCTTCTG  250

seq1  TGCTATCATATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCATATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATGCA  300

seq1  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCATCAGGAAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCATCAGGAAGCTAT  350

seq1  GAGATTCCAAATCCCAACAGTGGCAATTTACCATTTAGGTGATGTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAAATCCCAACAGTGGCAATTTACCATTTAGGTGATGTCTTAG  400

seq1  ATTCTGTTGCTGTAAAAACCACCATAGCCAAAGAAACATGTGAGAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTGCTGTAAAAACCACCATAGCCAAAGAAACATGTGAGAAAAGT  450

seq1  GTTTATTTACTTATGTACCTTGGTCACAGTATATTGTGTGAAGCCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTACTTATGTACCTTGGTCACAGTATATTGTGTGAAGCCAAGGC  500

seq1  CTTATACTCTACACAAAGGATAAACCGGATGAGAAAGAAATTAGGGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTCTACACAAAGGATAAACCGGATGAGAAAGAAATTAGGGAAAC  550

seq1  AACAACCTTCACTATAGGTACAAATAATATGAAATACCTTGGTGTGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTTCACTATAGGTACAAATAATATGAAATACCTTGGTGTGATTC  600

seq1  TATCTAAGAAAGTGAAAGATTTGTATGATAAGAACTTGAATTCTCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGAAAGTGAAAGATTTGTATGATAAGAACTTGAATTCTCTGAAA  650

seq1  AAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATA  700

seq1  GAATGGAAGGATCAATACAGTAAAAATGGCTATCTTGCCAAAAGCAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGGATCAATACAGTAAAAATGGCTATCTTGCCAAAAGCAATCT  750

seq1  ACAGATTCAATGCAATCCCCATCAAAATTCCAACTAAATTCTTCATCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCAATGCAATCCCCATCAAAATTCCAACTAAATTCTTCATCGAA  800

seq1  TTAGAAAGGGCAATTTGCAAATTCATCTGGAATAACAAAAAGACCTAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGGGCAATTTGCAAATTCATCTGGAATAACAAAAAGACCTAGGA  850

seq1  TAGCAAAAGCTATTCTCAATGATAAAAGAACCTCTGGT  888
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAGCTATTCTCAATGATAAAAGAACCTCTGGT  888