BAC Information

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BAC

Clone NameB6Ng01-156B24
Chromosome13 (Build37)18 (Build37)
Map Location 3,371,798 - 3,372,74840,467,676 - 40,467,925
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182
Downstream gene2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B24.bB6Ng01-156B24.g
ACCDH950713DH950714
length1,019283
definitionDH950713|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B24, 5' end.DH950714|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,371,798 - 3,372,748)(40,467,676 - 40,467,925)
sequence
gaattccttaggaacatgtccttgttgtatacttatcctgctcccattaa
ttggggtactctactgtggcaagggtacttgccatgtcttaacttgaaaa
ccagaaagtcagttgtgcatgtacaagtctctttcttccaagtaagatgt
cagttcccagggaggcctcaagaacttatactttactcactcacacccta
ctcaaaatagaagtctggttcgaagtagtctctgcactgaatcggtggtg
cgggtgtctctcttttgttggggtgcgggggtccgtccccagggcagctt
ctaagagcaaatgccagaaaagtgtatacatgggtttgtgcaggaaatgc
tgctgggtggtcagtttgggtccaagcctattgcagataactatagaaca
aaggaagcttctattctgattggtttccgaggacacatccaacaagaata
tgtagtcaattctggcaataatggcagaaacaagctatgagaaagtgtcc
ttataatagtagttaacagcacaaaatggcaggctagccaggtaagaggt
tacctaggccttatctaatctgaagtaggccttcacattccatctaggcc
ttaatattttacctataccttaacagccagcagttttgccctctgagcca
tcgcacatgcatgttcagatcaatgaatatctttctctgtattcatttat
ttatgagagacaaagtctctgtacatggtgcaaaaacatacaagacagac
caggccggcctctcaagtaagttctgcctctgcctcttcccagtgctgag
atcaagacagtgtttttctgtgttgccctcgctgtcctggaactttactc
tgtagaccaggctggcttggaacgcagaaatttgtctgcctctgcctaca
aagtagtaggtaggactaaaggcatgttacaccactgcccggcagtctat
tacttttcatgcagatgatccattcttgtacattttcggttggtttgtaa
gttgattttaagttgtttt
tctgaactcactgtcctttcaggtccacatttgctctggctctggcaact
gactgaaccaaacaattaggctcatacctagaactttggaaatggtaatg
gagttgataacacaccctaacagaaagaggaatgctccactaactagtac
actttcactagaagcctcaccctgtcagcagtttaggaatttgtaaagcc
aatctggacaatatttaaatggtttggaatttctaccttcatgttttttt
ttttttttttttttttttttttttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_3371798_3372748
seq2: B6Ng01-156B24.b_127_1063

seq1  CATGTCTTAACTTGTGAACCAGAAAGTCACTTGCCCACGTACAAGTCTCT  50
      ||||||||||||||  ||||||||||||| |||  || ||||||||||||
seq2  CATGTCTTAACTTGAAAACCAGAAAGTCAGTTGTGCATGTACAAGTCTCT  50

seq1  TCCTTCCAAGTAAGATGTCAGTTCCGTGGGAGGCCTTGGGAACTTATACT  100
      | |||||||||||||||||||||||  |||||||||   |||||||||||
seq2  TTCTTCCAAGTAAGATGTCAGTTCCCAGGGAGGCCTCAAGAACTTATACT  100

seq1  TTACTCACTCACACCCTACTCAAAATAGAAGTCGGATTCCAAGTAGTCTG  150
      ||||||||||||||||||||||||||||||||| | ||| ||||||||| 
seq2  TTACTCACTCACACCCTACTCAAAATAGAAGTCTGGTTCGAAGTAGTCTC  150

seq1  TACACTGAATCAGTGGTGTGGGTGTCTCTCTTTTGTTGGGGGGCGGGGGG  200
      | ||||||||| |||||| |||||||||||||||||||||| ||||||  
seq2  TGCACTGAATCGGTGGTGCGGGTGTCTCTCTTTTGTTGGGGTGCGGGG--  198

seq1  TGTCCATCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTATAC  250
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -GTCCGTCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTATAC  247

seq1  ATGGGTGGGTGCAGGAAATACTGCTGGGTGGTCAGTTTGGATCCAAGCAT  300
      ||||||  ||||||||||| |||||||||||||||||||| ||||||| |
seq2  ATGGGTTTGTGCAGGAAATGCTGCTGGGTGGTCAGTTTGGGTCCAAGCCT  297

seq1  ATTGCAGATAACTATAGAACAAAGGAAGCAGTTCGATTGGCCTCTCTCGT  350
      |||||||||||||||||||||||||||||  ||| |||           |
seq2  ATTGCAGATAACTATAGAACAAAGGAAGC--TTCTATT----------CT  335

seq1  GATTGGTTTCCGAGGACACATCCAACGAGAATATGTAATCAATTCTGGCA  400
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  GATTGGTTTCCGAGGACACATCCAACAAGAATATGTAGTCAATTCTGGCA  385

seq1  GTAATGGCAGAAACTAGATATGAGAAAGTGTCCTTATAATAGTAGTTAAC  450
       ||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  ATAATGGCAGAAACAAGCTATGAGAAAGTGTCCTTATAATAGTAGTTAAC  435

seq1  AGCACCAAATGGCAGGCTAGCCAGGTAAGAGGTTACCTAGCCCTTATCTA  500
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCACAAAATGGCAGGCTAGCCAGGTAAGAGGTTACCTAGGCCTTATCTA  485

seq1  ATCTGACGTAAGCCTTCACATTCCATCTAGGCCTTAATATTTTACCTATA  550
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTAGGCCTTCACATTCCATCTAGGCCTTAATATTTTACCTATA  535

seq1  CCTTAACAGCCAGCAGTTTTGCCCTCTGAGTCATCGCACATGCATGTATA  600
      |||||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  CCTTAACAGCCAGCAGTTTTGCCCTCTGAGCCATCGCACATGCATGTTCA  585

seq1  GATCAATGAATACCTTTCTCTGTATTCATTTATTTATGAGAGACCAAGTC  650
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  GATCAATGAATATCTTTCTCTGTATTCATTTATTTATGAGAGACAAAGTC  635

seq1  TCTGTACATGGTGCAAAAACATACAAGACAGACCAGGCTGGCCTCTCAAA  700
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  TCTGTACATGGTGCAAAAACATACAAGACAGACCAGGCCGGCCTCTCAAG  685

seq1  TAAGTTCTGCCTCTGCCTCTCCCCAGTGCTGAGATCAAGACAGTGTTTTT  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAAGTTCTGCCTCTGCCTCTTCCCAGTGCTGAGATCAAGACAGTGTTTTT  735

seq1  CTGTGTAGCCCTGGCTGTCCTGGAAC-TTACTCTGTAAACCAGGCTGGCC  799
      |||||| ||||| ||||||||||||| |||||||||| ||||||||||| 
seq2  CTGTGTTGCCCTCGCTGTCCTGGAACTTTACTCTGTAGACCAGGCTGGCT  785

seq1  TGGAATGCAGAAATCTGTCTGCCTCTGCCTACAAAGTA----GTAGGACT  845
      ||||| |||||||| |||||||||||||||||||||||    ||||||||
seq2  TGGAACGCAGAAATTTGTCTGCCTCTGCCTACAAAGTAGTAGGTAGGACT  835

seq1  AAAGGCGTGCGGCACCACTGCCCGACAGTCTATTACTTTTAAATGCCAGA  895
      |||||| ||   |||||||||||| |||||||||||||||  ||| ||||
seq2  AAAGGCATGTTACACCACTGCCCGGCAGTCTATTACTTTT-CATG-CAGA  883

seq1  TGAATCCATTCTTTTACATTTTCGGGTTGGTTTGTTAGTTGATTTTATGT  945
      || |||||||||| ||||||||| ||||||||||| ||||||||||| ||
seq2  TG-ATCCATTCTTGTACATTTTC-GGTTGGTTTGTAAGTTGATTTTAAGT  931

seq1  TGTTTT  951
      ||||||
seq2  TGTTTT  937

seq1: chr18_40467676_40467925
seq2: B6Ng01-156B24.g_68_319 (reverse)

seq1  AAACATGAA-GTAGAAATTCCAAATCATGTAAATATTGTCCAGATTGGCT  49
      ||||||||| |||||||||||||| ||| |||||||||||||||||||||
seq2  AAACATGAAGGTAGAAATTCCAAACCATTTAAATATTGTCCAGATTGGCT  50

seq1  TTACAAATTCCTAAACTGCTGGCAGGGCGAGGCTTCTAGTGAAAGTCTTC  99
      ||||||||||||||||||||| ||||| |||||||||||||||||| | |
seq2  TTACAAATTCCTAAACTGCTGACAGGGTGAGGCTTCTAGTGAAAGTGTAC  100

seq1  TAGTGAGTGGAGCCTTCCTCTTTCTGTTAGAGTGTGTTTTCAACTCCATT  149
      |||| |||||||| |||||||||||||||| ||||||| |||||||||||
seq2  TAGTTAGTGGAGCATTCCTCTTTCTGTTAGGGTGTGTTATCAACTCCATT  150

seq1  ACCATTTTCGAAGATCTAGGTATGAGCCT-ATTGTTTGGTTCAGTCAGTT  198
      ||||||| | ||| ||||||||||||||| ||||||||||||||||||||
seq2  ACCATTTCCAAAGTTCTAGGTATGAGCCTAATTGTTTGGTTCAGTCAGTT  200

seq1  GCCAGAGCCAGAGCAAAGGTGGACCTGAAAGGACAGTGAGTTCAGAGAAT  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCAGAGCCAGAGCAAATGTGGACCTGAAAGGACAGTGAGTTCAGAGAAT  250

seq1  TC  250
      ||
seq2  TC  252