BAC Information

Click to search

BAC

Clone NameB6Ng01-156N01
Chromosome13 (Build37)
Map Location 98,649,916 - 98,787,925
singlet/doubletdoublet
Overlap geneRgnef
Upstream geneLOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
Downstream geneLOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N01.bB6Ng01-156N01.g
ACCDH951220DH951221
length1,081939
definitionDH951220|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N01, 5' end.DH951221|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,649,916 - 98,650,995)(98,786,990 - 98,787,925)
sequence
gaattcatttcctaaatccaagcagtaagagagaaaagacttcccaaaga
tgccctctgacctctacctgtgggccacacttgcacaagcctcctccaca
acacttttaaaaacacaaaacctctttagtgattctttgtgagttttccc
atcatgtaccccagtaccactcatctccccatcgcctcctatccaccgtt
tgcccttgcaacacacagacaacaaaataaaacagagaaagcacctcatc
atggacactgtatcccactacttcttttaagaaagattgacttgagttga
agatccgtgtgtgagatgtcagagatgtatggcctacattccaagaaaga
gcttcacttaaatgcctactgtttctcttaaacaggataagccccagttc
gatgtaaaattctcaaggagaattcagcttttggctaaaatcaggaacga
tgttactgcagctttacaaccaaaggtctgtgtataagttcaattcgtac
aaacacaagaaaataatcaatgttcagagaggtattcatccctttttaat
tatacttcatttcagacaaactgtaaacatggccatccttgaacacacgc
tgaaataaacatgtgcaagcacatttattgacccataccaactccttaag
ttcattccattccagtgcaaatcggttccaaagcacttgtaccctcaccc
tccccccttcctctcacatacaacataggctgggctggaccagacagaaa
acagagcaaccaaaatatatcactcattcaccacaagcatatggagctct
caaacatgttttaatcagtgtgggccaagcgagccgcagaatgctaactc
ttcacttccagtaaacacacattaagtatttcccattagagaggtatcga
gtaacagtcttgaaatcagtcttcccagatgagtttctttttttcagtag
ccctgatgcttaaaaggtatgcagtataggtgcttggtagccccgaacag
gatttgacaactgggttagttggcaaccaagtccttctccccatgccttt
gatagcagaatgctttctcctcagtgccagt
gaattctcttgcttgatgttctcaatgttcaaggctgagaataatttatt
cttgtttttgtttttttgggttttttgtttgtttgttttttagagacagg
gttttttttgtgtgtgtgtagccctggctgtcctggaactcactctgtag
accaggctggcctcgaacacagaaatccgcctgcctctgcctccgaagtg
ctgggattacaggcgtgcaccaccacacccggcctaaaaagttttgtttt
gttttttgtttttttgttaatttattcttataggtgtacccatccattta
agaaaaatatttaatttattctccaaatcaaaggctacaaaattgaaaag
tactcattttaactttagacataatccttccagctatatgccatttatgt
gttgctatagttttctaatcatatagaaaaccacatgaaatcacagaagc
agtttacattattctgattgtgacttgaattcataccccagcaggcccct
gccacactgtatctctctgcttctgcctctcactcacccctccctgatca
gagaggctcagctaccacagagcaggctgtgatgccgctaacagttggag
aaatagttgaagtaaagagatgaatgctaatgaagacatacactgccgtg
ttccaagcctacacggttgaatggcccctcaggttgtttccctttagctt
tctctaagcatccgaagacttcacaaaacacagcacaacataggacttct
cggccttcctcctcctgcaagaagtgctttcaagaggctcctgtgggaga
gtcctctgtagaccctggctgctcactgtaatcttacgtgggtcacacct
tttctgtgcgcctatcagagtagggaagaccggtgagtggcagccgttgt
tttttggttttatgggaaaggcagtgcgggtttccactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_98649916_98650995
seq2: B6Ng01-156N01.b_48_1128

seq1  GAATTCATTTCCTAAATCCAAGCAGTAAGAGAGAAAAGACTTCCCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTAAATCCAAGCAGTAAGAGAGAAAAGACTTCCCAAAGA  50

seq1  TGCCCTCTGACCTCTACCTGTGGGCCACACTTGCACAAGCCTCCTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTGACCTCTACCTGTGGGCCACACTTGCACAAGCCTCCTCCACA  100

seq1  ACACTTTTAAAAACACAAAACCTCTTTAGTGATTCTTTGTGAGTTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTAAAAACACAAAACCTCTTTAGTGATTCTTTGTGAGTTTTCCC  150

seq1  ATCATGTACCCCAGTACCACTCATCTCCCCATCGCCTCCTATCCACCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTACCCCAGTACCACTCATCTCCCCATCGCCTCCTATCCACCGTT  200

seq1  TGCCCTTGCAACACACAGACAACAAAATAAAACAGAGAAAGCACCTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGCAACACACAGACAACAAAATAAAACAGAGAAAGCACCTCATC  250

seq1  ATGGACACTGTATCCCACTACTTCTTTTAAGAAAGATTGACTTGAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACTGTATCCCACTACTTCTTTTAAGAAAGATTGACTTGAGTTGA  300

seq1  AGATCCGTGTGTGAGATGTCAGAGATGTATGGCCTACATTCCAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGTGTGTGAGATGTCAGAGATGTATGGCCTACATTCCAAGAAAGA  350

seq1  GCTTCACTTAAATGCCTACTGTTTCTCTTAAACAGGATAAGCCCCAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTTAAATGCCTACTGTTTCTCTTAAACAGGATAAGCCCCAGTTC  400

seq1  GATGTAAAATTCTCAAGGAGAATTCAGCTTTTGGCTAAAATCAGGAACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAAATTCTCAAGGAGAATTCAGCTTTTGGCTAAAATCAGGAACGA  450

seq1  TGTTACTGCAGCTTTACAACCAAAGGTCTGTGTATAAGTTCAATTCGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGCAGCTTTACAACCAAAGGTCTGTGTATAAGTTCAATTCGTAC  500

seq1  AAACACAAGAAAATAATCAATGTTCAGAGAGGTATTCATCCCTTTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGAAAATAATCAATGTTCAGAGAGGTATTCATCCCTTTTTAAT  550

seq1  TATACTTCATTTCAGACAAACTGTAAACATGGCCATCCTTGAACACACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCATTTCAGACAAACTGTAAACATGGCCATCCTTGAACACACGC  600

seq1  TGAAATAAACATGTGCAAGCACATTTATTGACCCATACCAACTCCTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAACATGTGCAAGCACATTTATTGACCCATACCAACTCCTTAAG  650

seq1  TTCATTCCATTCCAGTGCAAATCGGTTCCAAAGCACTTGTACCCTCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCATTCCAGTGCAAATCGGTTCCAAAGCACTTGTACCCTCACCC  700

seq1  TCCCCCCTTCCTCTCACATACAACATAGGCTGGGCTGGACCAGACAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTTCCTCTCACATACAACATAGGCTGGGCTGGACCAGACAGAAA  750

seq1  ACAGAGCAACCAAAATATATCACTCATTCACCACAAGCATATGGAGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAACCAAAATATATCACTCATTCACCACAAGCATATGGAGCTCT  800

seq1  CAAACATGTTTTAATCAGTGTGGGCCAAGCGAGCCGCAGAATGCTAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTTTTAATCAGTGTGGGCCAAGCGAGCCGCAGAATGCTAACTC  850

seq1  TTCACTTCCAGTAAACACACATTAAGTATTTCCCATTAGAGAGGTATCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCCAGTAAACACACATTAAGTATTTCCCATTAGAGAGGTATCGA  900

seq1  GTAACAGTCTTGAAATCAGGTCTTCCCAGATGAGTT--CTCTATTCAGTA  948
      |||||||||||||||||| |||||||||||||||||   | | |||||||
seq2  GTAACAGTCTTGAAATCA-GTCTTCCCAGATGAGTTTCTTTTTTTCAGTA  949

seq1  GCCCTGATGCTTAAAAAGGTATGCAGTATAGGGTGCTTGGTAGCCCCG-A  997
      |||||||||||| ||||||||||||||||| ||||||||||||||||| |
seq2  GCCCTGATGCTT-AAAAGGTATGCAGTATA-GGTGCTTGGTAGCCCCGAA  997

seq1  CAGGATTTGAC-ACTGGGTTAGTTGGCAACC-AGTCCTTCT-CACATGCC  1044
      ||||||||||| ||||||||||||||||||| ||||||||| | ||||||
seq2  CAGGATTTGACAACTGGGTTAGTTGGCAACCAAGTCCTTCTCCCCATGCC  1047

seq1  TTTGATAGCAAGAATGCTTTCTCCTCCAGTGCCAGT  1080
      ||||||||| ||||||||||||||| ||||||||||
seq2  TTTGATAGC-AGAATGCTTTCTCCT-CAGTGCCAGT  1081

seq1: chr13_98786990_98787925
seq2: B6Ng01-156N01.g_68_1006 (reverse)

seq1  CAGTGGAAACCCGCACTGCC-TTCCCAT-AAACCCATAAACCACGGCTGC  48
      |||||||||||||||||||| ||||||| ||||| | |||| ||||||||
seq2  CAGTGGAAACCCGCACTGCCTTTCCCATAAAACCAAAAAACAACGGCTGC  50

seq1  CACTCACCGGTCTTCCCTACTCTGATAGGCGCACAG-AAAGGTGTGACCC  97
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTCACCGGTCTTCCCTACTCTGATAGGCGCACAGAAAAGGTGTGACCC  100

seq1  ACGTAAGATTACAGTGAGCAGCCAGGGTCTACAGAGGACTCTCCCACAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAGATTACAGTGAGCAGCCAGGGTCTACAGAGGACTCTCCCACAGG  150

seq1  AGCCTCTTGAAAGCACTTCTTGCAGGAGGAGGAAGGCCGAGAAGTCCTAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTGAAAGCACTTCTTGCAGGAGGAGGAAGGCCGAGAAGTCCTAT  200

seq1  GTTGTGCTGTGTTTTGTGAAGTCTTCGGATGCTTAGAGAAAGCTAAAGGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGTGTTTTGTGAAGTCTTCGGATGCTTAGAGAAAGCTAAAGGG  250

seq1  AAACAACCTGAGGGGCCATTCAACCGTGTAGGCTTGGAACACGGCAGTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCTGAGGGGCCATTCAACCGTGTAGGCTTGGAACACGGCAGTGT  300

seq1  ATGTCTTCATTAGCATTCATCTCTTTACTTCAACTATTTCTCCAACTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCATTAGCATTCATCTCTTTACTTCAACTATTTCTCCAACTGTT  350

seq1  AGCGGCATCACAGCCTGCTCTGTGGTAGCTGAGCCTCTCTGATCAGGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCATCACAGCCTGCTCTGTGGTAGCTGAGCCTCTCTGATCAGGGAG  400

seq1  GGGTGAGTGAGAGGCAGAAGCAGAGAGATACAGTGTGGCAGGGGCCTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGTGAGAGGCAGAAGCAGAGAGATACAGTGTGGCAGGGGCCTGCT  450

seq1  GGGGTATGAATTCAAGTCACAATCAGAATAATGTAAACTGCTTCTGTGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATGAATTCAAGTCACAATCAGAATAATGTAAACTGCTTCTGTGAT  500

seq1  TTCATGTGGTTTTCTATATGATTAGAAAACTATAGCAACACATAAATGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGGTTTTCTATATGATTAGAAAACTATAGCAACACATAAATGGC  550

seq1  ATATAGCTGGAAGGATTATGTCTAAAGTTAAAATGAGTACTTTTCAATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGGAAGGATTATGTCTAAAGTTAAAATGAGTACTTTTCAATTT  600

seq1  TGTAGCCTTTGATTTGGAGAATAAATTAAATATTTTTCTTAAATGGATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTTGATTTGGAGAATAAATTAAATATTTTTCTTAAATGGATGG  650

seq1  GTACACCTATAAGAATAAATTAACAAAAAAACAAAAAACAAAACAAAACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTATAAGAATAAATTAACAAAAAAACAAAAAACAAAACAAAACT  700

seq1  TTTTAGGCCGGGTGTGGTGGTGCACGCCTGTAATCCCAGCACTTCGGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCCGGGTGTGGTGGTGCACGCCTGTAATCCCAGCACTTCGGAGG  750

seq1  CAGAGGCAGGCGGATTTCTGTGTTCGAGGCCAGCCTGGTCTACAGAGTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCGGATTTCTGTGTTCGAGGCCAGCCTGGTCTACAGAGTGA  800

seq1  GTTCCAGGACAGCCAGGGCTACACACACACAAAAAAAACCCTGTCTCTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAGGGCTACACACACACAAAAAAAACCCTGTCTCTAA  850

seq1  AAAACAAACAAACAAAAAACCCAAAAAAACAAAAACAAGAATAAATTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAAAAACCCAAAAAAACAAAAACAAGAATAAATTATT  900

seq1  CTCAGCCTTGAACATTGAGAACATCAAGCAAGAGAATTC  936
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTTGAACATTGAGAACATCAAGCAAGAGAATTC  939